BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00023163
         (414 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II su...    77   2e-12
ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213...    77   2e-12
ref|XP_007211941.1| hypothetical protein PRUPE_ppa010773mg [Prun...    73   4e-11
ref|XP_007211940.1| hypothetical protein PRUPE_ppa010773mg [Prun...    73   4e-11
ref|XP_007026413.1| DNA-directed RNA polymerase II subunit rpb4,...    70   2e-10
ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerases IV a...    70   2e-10
gb|AFK45778.1| unknown [Medicago truncatula]                           69   5e-10
ref|XP_006373571.1| hypothetical protein POPTR_0016s00490g [Popu...    69   5e-10
ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 ...    69   5e-10
ref|XP_006597625.1| PREDICTED: DNA-directed RNA polymerases IV a...    69   9e-10
ref|XP_007147572.1| hypothetical protein PHAVU_006G135800g, part...    68   1e-09
gb|EPS73262.1| hypothetical protein M569_01493, partial [Genlise...    68   1e-09
ref|XP_006495326.1| PREDICTED: DNA-directed RNA polymerases IV a...    67   2e-09
ref|XP_006467223.1| PREDICTED: DNA-directed RNA polymerases IV a...    67   2e-09
ref|XP_006449991.1| hypothetical protein CICLE_v10016499mg [Citr...    67   2e-09
ref|XP_006398486.1| hypothetical protein EUTSA_v10001026mg [Eutr...    67   2e-09
ref|XP_002525033.1| conserved hypothetical protein [Ricinus comm...    67   3e-09
ref|XP_006282722.1| hypothetical protein CARUB_v10005755mg [Caps...    66   4e-09
ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246...    66   6e-09
gb|ACL54830.1| unknown [Zea mays]                                      64   2e-08

>ref|XP_004158834.1| PREDICTED: DNA-directed RNA polymerase II subunit rpb4-like
           [Cucumis sativus]
          Length = 220

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 36/63 (57%), Positives = 49/63 (77%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR VLETL+ + V+D EIC+I N+CP+T DE+FAL+ SLK  R ++   I +VLSELAK
Sbjct: 157 SVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAK 216

Query: 234 LKS 226
           +KS
Sbjct: 217 VKS 219


>ref|XP_004134991.1| PREDICTED: uncharacterized protein LOC101213971 [Cucumis sativus]
          Length = 242

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 36/63 (57%), Positives = 49/63 (77%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR VLETL+ + V+D EIC+I N+CP+T DE+FAL+ SLK  R ++   I +VLSELAK
Sbjct: 157 SVRPVLETLKKYGVTDSEICVIANVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAK 216

Query: 234 LKS 226
           +KS
Sbjct: 217 VKS 219


>ref|XP_007211941.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
           gi|462407806|gb|EMJ13140.1| hypothetical protein
           PRUPE_ppa010773mg [Prunus persica]
          Length = 237

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR+VLETL  + VSD EI +I N+CPET DE+FAL+ SLK  R  + + +K+VLSEL K
Sbjct: 173 SVRKVLETLTKYGVSDGEISVIANVCPETTDEVFALVPSLKTTRSVLSQPLKEVLSELTK 232

Query: 234 LK 229
           LK
Sbjct: 233 LK 234


>ref|XP_007211940.1| hypothetical protein PRUPE_ppa010773mg [Prunus persica]
           gi|462407805|gb|EMJ13139.1| hypothetical protein
           PRUPE_ppa010773mg [Prunus persica]
          Length = 225

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 36/62 (58%), Positives = 47/62 (75%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR+VLETL  + VSD EI +I N+CPET DE+FAL+ SLK  R  + + +K+VLSEL K
Sbjct: 161 SVRKVLETLTKYGVSDGEISVIANVCPETTDEVFALVPSLKTTRSVLSQPLKEVLSELTK 220

Query: 234 LK 229
           LK
Sbjct: 221 LK 222


>ref|XP_007026413.1| DNA-directed RNA polymerase II subunit rpb4, putative isoform 1
           [Theobroma cacao] gi|590627315|ref|XP_007026414.1|
           DNA-directed RNA polymerase II subunit rpb4, putative
           isoform 1 [Theobroma cacao] gi|508781779|gb|EOY29035.1|
           DNA-directed RNA polymerase II subunit rpb4, putative
           isoform 1 [Theobroma cacao] gi|508781780|gb|EOY29036.1|
           DNA-directed RNA polymerase II subunit rpb4, putative
           isoform 1 [Theobroma cacao]
          Length = 231

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 34/62 (54%), Positives = 44/62 (70%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR+VLE L  + VS  EIC+I N CPET DE+FAL+ SL+  + R+   +KDVL EL K
Sbjct: 167 SVRRVLEALSKYGVSYSEICVIANTCPETVDEVFALVRSLEAKKSRLSEPLKDVLDELGK 226

Query: 234 LK 229
           LK
Sbjct: 227 LK 228


>ref|XP_003534990.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           [Glycine max]
          Length = 211

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 33/62 (53%), Positives = 45/62 (72%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           ++R +L+ L    V+D EIC+IGN+CPET DE+FAL+ SLKD R    + +KD LSELAK
Sbjct: 147 SIRHILDRLAKCGVTDSEICVIGNVCPETIDEVFALLPSLKDRRNIDSQVLKDSLSELAK 206

Query: 234 LK 229
            +
Sbjct: 207 FR 208


>gb|AFK45778.1| unknown [Medicago truncatula]
          Length = 201

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/62 (51%), Positives = 45/62 (72%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR  LE L +H +++ EIC+I N+CPETADE+FAL+ SLK  R    + +++ LSELAK
Sbjct: 137 SVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSKRGINSQPVEEALSELAK 196

Query: 234 LK 229
            K
Sbjct: 197 FK 198


>ref|XP_006373571.1| hypothetical protein POPTR_0016s00490g [Populus trichocarpa]
           gi|550320481|gb|ERP51368.1| hypothetical protein
           POPTR_0016s00490g [Populus trichocarpa]
          Length = 197

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 35/62 (56%), Positives = 43/62 (69%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR+VLE LR + VSD EI LI N+ PETADE FAL+ SLK     +   +KD+L ELAK
Sbjct: 133 SVRRVLEALRKYGVSDGEISLIANVFPETADEAFALVPSLKSKASTLREPLKDILGELAK 192

Query: 234 LK 229
            K
Sbjct: 193 FK 194


>ref|XP_003594343.1| DNA-directed RNA polymerase II subunit rpb4 [Medicago truncatula]
           gi|124360902|gb|ABN08874.1| RNA polymerase Rpb4
           [Medicago truncatula] gi|355483391|gb|AES64594.1|
           DNA-directed RNA polymerase II subunit rpb4 [Medicago
           truncatula]
          Length = 223

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/62 (51%), Positives = 45/62 (72%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR  LE L +H +++ EIC+I N+CPETADE+FAL+ SLK  R    + +++ LSELAK
Sbjct: 159 SVRHTLEPLMNHDLTESEICVIANVCPETADEVFALLPSLKSKRGINSQPVEEALSELAK 218

Query: 234 LK 229
            K
Sbjct: 219 FK 220


>ref|XP_006597625.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X1 [Glycine max]
           gi|571518018|ref|XP_006597626.1| PREDICTED: DNA-directed
           RNA polymerases IV and V subunit 4-like isoform X2
           [Glycine max]
          Length = 211

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 31/62 (50%), Positives = 46/62 (74%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           ++R++L+ L    ++D EIC+IGN+CPET DE+FAL+ SLKD R    + +KD LS+LAK
Sbjct: 147 SIRRILDPLAKCGLTDSEICVIGNVCPETIDEVFALLPSLKDKRNIDRQVLKDSLSQLAK 206

Query: 234 LK 229
            +
Sbjct: 207 FR 208


>ref|XP_007147572.1| hypothetical protein PHAVU_006G135800g, partial [Phaseolus
           vulgaris] gi|561020795|gb|ESW19566.1| hypothetical
           protein PHAVU_006G135800g, partial [Phaseolus vulgaris]
          Length = 242

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 33/62 (53%), Positives = 45/62 (72%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR VLE L ++ ++D EIC+IGN+CPET DE+FAL+  LK  R      ++D LSELAK
Sbjct: 178 SVRHVLEPLANNGLTDSEICVIGNVCPETIDEVFALLPPLKGKRNVQREVLEDSLSELAK 237

Query: 234 LK 229
           L+
Sbjct: 238 LR 239


>gb|EPS73262.1| hypothetical protein M569_01493, partial [Genlisea aurea]
          Length = 124

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 33/63 (52%), Positives = 45/63 (71%)
 Frame = -1

Query: 411 VRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAKL 232
           VR++LE L+ H VSD EICLI N+ PE+ DE+F+LI +LK N  +++  +K  L ELA L
Sbjct: 61  VRKILEPLKKHGVSDAEICLISNVSPESTDEVFSLIPTLKPNVGKLKGPLKIALDELADL 120

Query: 231 KSG 223
           K G
Sbjct: 121 KEG 123


>ref|XP_006495326.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X2 [Citrus sinensis]
          Length = 112

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 31/63 (49%), Positives = 45/63 (71%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           AV+ + ++L  H V+D EIC+I NICPET +E +A++ SLK  R R+   +K+VL +LAK
Sbjct: 49  AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 108

Query: 234 LKS 226
            KS
Sbjct: 109 FKS 111


>ref|XP_006467223.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 4-like
           isoform X2 [Citrus sinensis]
          Length = 225

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 31/63 (49%), Positives = 45/63 (71%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           AV+ + ++L  H V+D EIC+I NICPET +E +A++ SLK  R R+   +K+VL +LAK
Sbjct: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 221

Query: 234 LKS 226
            KS
Sbjct: 222 FKS 224


>ref|XP_006449991.1| hypothetical protein CICLE_v10016499mg [Citrus clementina]
           gi|557552602|gb|ESR63231.1| hypothetical protein
           CICLE_v10016499mg [Citrus clementina]
          Length = 225

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 31/63 (49%), Positives = 45/63 (71%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           AV+ + ++L  H V+D EIC+I NICPET +E +A++ SLK  R R+   +K+VL +LAK
Sbjct: 162 AVKGLFQSLSEHGVTDGEICVIANICPETVEEAYAIVPSLKAKRSRLNDLLKEVLIQLAK 221

Query: 234 LKS 226
            KS
Sbjct: 222 FKS 224


>ref|XP_006398486.1| hypothetical protein EUTSA_v10001026mg [Eutrema salsugineum]
           gi|557099575|gb|ESQ39939.1| hypothetical protein
           EUTSA_v10001026mg [Eutrema salsugineum]
          Length = 208

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 27/62 (43%), Positives = 47/62 (75%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           + RQ+LE L+ H VS+ E+C+I N+CPE+ DE+FA + S+K  + +I + +++ L++L+K
Sbjct: 147 SARQILEPLKKHGVSEGELCMIANVCPESIDEVFAFVPSMKGKKDKISQPLEEALTKLSK 206

Query: 234 LK 229
           LK
Sbjct: 207 LK 208


>ref|XP_002525033.1| conserved hypothetical protein [Ricinus communis]
           gi|223535695|gb|EEF37360.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 203

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 29/62 (46%), Positives = 45/62 (72%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR++LE L+ H VS+ EIC I N+CP+  DE+FAL+ SLK  +  +   +KD+L +L++
Sbjct: 139 SVRRILEGLKKHGVSEGEICTIANVCPDGVDEVFALVPSLKSKKNVLREPLKDILGQLSE 198

Query: 234 LK 229
           LK
Sbjct: 199 LK 200


>ref|XP_006282722.1| hypothetical protein CARUB_v10005755mg [Capsella rubella]
           gi|482551427|gb|EOA15620.1| hypothetical protein
           CARUB_v10005755mg [Capsella rubella]
          Length = 203

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 32/65 (49%), Positives = 45/65 (69%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VRQVLE L++H +SD E+C+I N  PET DE+ A I SLK  +  I + ++D L EL+K
Sbjct: 139 SVRQVLEPLKTHGISDGEMCVIANASPETVDEVLAFIPSLKTKKDVISQPLEDALVELSK 198

Query: 234 LKSGD 220
           LK  +
Sbjct: 199 LKKSE 203


>ref|XP_002274855.1| PREDICTED: uncharacterized protein LOC100246461 isoform 1 [Vitis
           vinifera] gi|359495604|ref|XP_003635035.1| PREDICTED:
           uncharacterized protein LOC100246461 isoform 2 [Vitis
           vinifera] gi|297736694|emb|CBI25730.3| unnamed protein
           product [Vitis vinifera]
          Length = 239

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 34/62 (54%), Positives = 42/62 (67%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +VR VLE L  + VSD EIC+I N CPET DE+FAL+ SLK     +   +KDVL  LA+
Sbjct: 163 SVRLVLEPLSKYGVSDGEICVIANTCPETIDEVFALVPSLKPKWSTLREPLKDVLRGLAE 222

Query: 234 LK 229
           LK
Sbjct: 223 LK 224


>gb|ACL54830.1| unknown [Zea mays]
          Length = 115

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 31/63 (49%), Positives = 46/63 (73%)
 Frame = -1

Query: 414 AVRQVLETLRSHKVSDEEICLIGNICPETADELFALISSLKDNRFRIERAIKDVLSELAK 235
           +V+Q +E L+   VSD EIC+I NI PET +E++AL+ SLK NR  IE ++ +VL+ LA 
Sbjct: 51  SVKQAIEPLKKCGVSDGEICMIANIGPETVEEVYALVPSLKANRSAIEGSVTEVLTALAN 110

Query: 234 LKS 226
           +K+
Sbjct: 111 IKA 113