BLASTX nr result
ID: Cocculus22_contig00022981
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00022981
(711 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 335 7e-90
ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Th... 333 4e-89
ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 332 1e-88
ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Popu... 332 1e-88
gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis] 331 1e-88
ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prun... 331 1e-88
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis... 330 4e-88
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V... 327 2e-87
gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nico... 326 4e-87
ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 325 1e-86
ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 325 1e-86
ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 324 2e-86
ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici... 322 6e-86
ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 321 2e-85
ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha... 319 5e-85
ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 318 1e-84
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ... 318 1e-84
ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-li... 318 1e-84
gb|AHL27587.1| RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza] 317 2e-84
ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phas... 317 3e-84
>ref|XP_004298927.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Fragaria vesca subsp.
vesca]
Length = 1136
Score = 335 bits (860), Expect = 7e-90
Identities = 162/237 (68%), Positives = 199/237 (83%), Gaps = 1/237 (0%)
Frame = +3
Query: 3 NYILQRLYKLKSTCYEPLSFVQHQLESL-RGDQKHLPSSSATRLMEQNLMRCYRVVVTPS 179
N +L++L KLK+TCY+PLSFV+ QL+ L R +K L S RLME N+M C+RV++TPS
Sbjct: 327 NVLLEKLQKLKTTCYDPLSFVKVQLQLLERNSKKRL--SPHQRLMEHNVMSCHRVLITPS 384
Query: 180 KVYCLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTS 359
K+YCLGPE+E SNY+V+N+A++ SDF+R++F +EDWGKL +A+STSIE G F+ P++T
Sbjct: 385 KIYCLGPELEKSNYVVKNFAQYASDFMRVTFVEEDWGKLPVNALSTSIEQGFFAKPFRTG 444
Query: 360 IYHRVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIR 539
IY R+LSILRDGIVIG KRFEFLAFSASQLRS SVWMFASN +V A DIR+WMGCF IR
Sbjct: 445 IYQRILSILRDGIVIGDKRFEFLAFSASQLRSNSVWMFASNDSVKAEDIRDWMGCFNKIR 504
Query: 540 SVSKCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
SVSKCAARMGQLFSSS QT VP +D+E IPDIE TTDG++YCFSDGIG+ISLSFA+
Sbjct: 505 SVSKCAARMGQLFSSSTQTLTVPQKDVELIPDIETTTDGVSYCFSDGIGKISLSFAR 561
>ref|XP_007036161.1| RNA-dependent RNA polymerase 2 isoform 1 [Theobroma cacao]
gi|590663258|ref|XP_007036162.1| RNA-dependent RNA
polymerase 2 isoform 1 [Theobroma cacao]
gi|508773406|gb|EOY20662.1| RNA-dependent RNA polymerase
2 isoform 1 [Theobroma cacao] gi|508773407|gb|EOY20663.1|
RNA-dependent RNA polymerase 2 isoform 1 [Theobroma
cacao]
Length = 1149
Score = 333 bits (853), Expect = 4e-89
Identities = 156/234 (66%), Positives = 195/234 (83%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
ILQ+ +KL STCY P+SFV+ L + + P SS RL++ N+M C+R +VTPSK+Y
Sbjct: 333 ILQKFHKLLSTCYNPVSFVKENLPVSERNFQSRPLSSFKRLIDHNVMSCHRALVTPSKIY 392
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSNY+V+N+AE+ SDF+R+SF +EDWGKL ++AISTS++ G+FS P++T IYH
Sbjct: 393 CLGPELETSNYVVKNFAEYASDFMRVSFVEEDWGKLSANAISTSVQLGIFSKPFRTKIYH 452
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LS+L+ GIVIG KRFEFLAFSASQLRS SVWMFASN V A D+REWMGCFK IRSVS
Sbjct: 453 RILSVLQHGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVTAEDVREWMGCFKKIRSVS 512
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS T +VP +D++ IPDIEVT+DG+NYCFSDGIG+ISL FA+
Sbjct: 513 KCAARMGQLFSSSLPTLVVPVQDVKIIPDIEVTSDGINYCFSDGIGKISLPFAR 566
>ref|XP_006476748.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Citrus sinensis]
Length = 1131
Score = 332 bits (850), Expect = 1e-88
Identities = 152/234 (64%), Positives = 197/234 (84%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
+LQ+L+KLKS CY+P+SFV+ QL L + K +P SS RL++ N+M CYR +VTP K+Y
Sbjct: 341 VLQKLHKLKSICYDPVSFVKTQLHVLGRNCKSIPLSSHKRLIDHNVMSCYRALVTPMKIY 400
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSNY+V+N+A++ SDF+R++F +EDW KL ++A+STSI+ G+F+ PY+T IY
Sbjct: 401 CLGPELETSNYVVKNFAKYASDFMRVTFVEEDWSKLPANALSTSIQRGIFAKPYRTKIYS 460
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+L+IL+DGIVIG K +EFLAFSASQLR+ SVWMFASN V+A D+REWMGCF I SVS
Sbjct: 461 RILTILQDGIVIGDKHYEFLAFSASQLRNNSVWMFASNDEVSAEDVREWMGCFNKIHSVS 520
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS+QT +VP +D+E IPD+EVT+DG YCFSDGIG+ISLSFA+
Sbjct: 521 KCAARMGQLFSSSKQTLVVPVQDVEMIPDVEVTSDGNTYCFSDGIGKISLSFAR 574
>ref|XP_002321582.1| hypothetical protein POPTR_0015s08500g [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| hypothetical protein
POPTR_0015s08500g [Populus trichocarpa]
Length = 1110
Score = 332 bits (850), Expect = 1e-88
Identities = 161/235 (68%), Positives = 195/235 (82%), Gaps = 1/235 (0%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQL-ESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKV 185
ILQ+L+KLK TCY+PLSFV+ L ESL SS L E N+M C+R ++TPSK+
Sbjct: 327 ILQKLHKLKMTCYDPLSFVKQSLRESL--------SSPPKSLTENNIMSCHRALITPSKI 378
Query: 186 YCLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIY 365
+CLGPE ETSNY+V+++A++ SDFIR++F +EDW KL ++AISTSI+ G+F+ P++T IY
Sbjct: 379 FCLGPEYETSNYVVKHFAQYASDFIRVTFVEEDWSKLPANAISTSIQRGIFAKPFRTGIY 438
Query: 366 HRVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSV 545
HR+LSILRDG VIG KRFEFLAFSASQLRS SVWMFASN V A DIR+WMGCF IRSV
Sbjct: 439 HRILSILRDGFVIGAKRFEFLAFSASQLRSNSVWMFASNNGVKAEDIRKWMGCFDKIRSV 498
Query: 546 SKCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
SKCAARMGQLFSSS QTF+VP +D+E IPDIEVTTDG++YCFSDGIG+ISLSFAK
Sbjct: 499 SKCAARMGQLFSSSLQTFVVPVQDVEIIPDIEVTTDGIDYCFSDGIGKISLSFAK 553
>gb|EXC16034.1| RNA-dependent RNA polymerase 2 [Morus notabilis]
Length = 1115
Score = 331 bits (849), Expect = 1e-88
Identities = 155/236 (65%), Positives = 195/236 (82%)
Frame = +3
Query: 3 NYILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSK 182
N ++Q+L+KLKSTCY+PLS + L + K+ PSS+ RL E +LM C+R ++TPSK
Sbjct: 322 NAVIQKLHKLKSTCYDPLSLAKTYAHILEKNTKN-PSSAIKRLTENSLMSCHRALITPSK 380
Query: 183 VYCLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSI 362
+YC+GPE+ETSNY+V+N+A + SDF+R++F +EDWGKL +STSIE G+F+ PY+T I
Sbjct: 381 IYCMGPELETSNYVVKNFAAYASDFLRVTFVEEDWGKLHPHVVSTSIEQGIFAKPYRTGI 440
Query: 363 YHRVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRS 542
Y R+LSILR+GI+IG KR+EFLAFSASQLRS +VWMFASN V A DIREWMGCF IRS
Sbjct: 441 YDRILSILRNGILIGAKRYEFLAFSASQLRSSAVWMFASNDNVKAEDIREWMGCFNKIRS 500
Query: 543 VSKCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
VSKCAARMGQLFSSSRQT IVP +D+E IPD+EVTTDG++YCFSDGIG+IS SFA+
Sbjct: 501 VSKCAARMGQLFSSSRQTLIVPTQDLEIIPDVEVTTDGIDYCFSDGIGKISSSFAR 556
>ref|XP_007211312.1| hypothetical protein PRUPE_ppa000513mg [Prunus persica]
gi|462407047|gb|EMJ12511.1| hypothetical protein
PRUPE_ppa000513mg [Prunus persica]
Length = 1118
Score = 331 bits (849), Expect = 1e-88
Identities = 156/236 (66%), Positives = 197/236 (83%)
Frame = +3
Query: 3 NYILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSK 182
N +L++L+K K+TCY+PLSF++ QL L + K PS RLME N+M C+RV++TPSK
Sbjct: 325 NVLLEKLHKRKTTCYDPLSFLKMQLHVLERNHKSRPSPYK-RLMEHNVMSCHRVLITPSK 383
Query: 183 VYCLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSI 362
+ CLGPE+E SNY+V+N+A + SDF+R++F DEDW KL ++AISTSI+ G+F+ P++T I
Sbjct: 384 ICCLGPELEKSNYVVKNFAAYASDFMRVTFVDEDWSKLPANAISTSIQQGIFAKPHRTGI 443
Query: 363 YHRVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRS 542
YHR+LSILRDGIVIG KRFEFLAFSASQLRS SVWMF+SN V A DIREWMGCF IRS
Sbjct: 444 YHRMLSILRDGIVIGEKRFEFLAFSASQLRSSSVWMFSSNDNVKAEDIREWMGCFSKIRS 503
Query: 543 VSKCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
+SKCAARMGQLFSSS QT +VPA+D+E IPD+E ++DG+ YCFSDGIG+ISLSFA+
Sbjct: 504 ISKCAARMGQLFSSSTQTLVVPAQDVEIIPDVETSSDGVTYCFSDGIGKISLSFAR 559
>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
2 [Cucumis sativus]
Length = 1117
Score = 330 bits (845), Expect = 4e-88
Identities = 152/234 (64%), Positives = 196/234 (83%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
+LQRL++LK CY+PLSF++ QL + + K LP SS RL N+M CYRV+VTPS++Y
Sbjct: 326 VLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRL-SNNVMNCYRVLVTPSRIY 384
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSNY+V+N++ + SDF+R++F +EDW KL + A++TSI+ G+ S PY+T IYH
Sbjct: 385 CLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKLPAGAVTTSIQRGILSKPYRTEIYH 444
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R++++LRDGIVIG KRFEFLAFSASQLRS SVWMFAS+ + A +IR+WMGCF+ IRS+S
Sbjct: 445 RIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSIS 504
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QT +VP RD+E IPDIEV TDG++YCFSDGIG+ISLSFA+
Sbjct: 505 KCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCFSDGIGKISLSFAR 558
>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product
[Vitis vinifera]
Length = 1127
Score = 327 bits (838), Expect = 2e-87
Identities = 157/234 (67%), Positives = 192/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
ILQ+L+K KST Y+P+SF++ Q + + K+LP SS +RL N+M C+RV+VTPSK+Y
Sbjct: 325 ILQKLHKRKSTRYDPISFIKAQAHIINMNIKNLPPSSHSRLTNNNVMSCHRVLVTPSKIY 384
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+E+SNY+V++YA + SDF+R+SF +EDW KL S+A+S SI F+ P++T IYH
Sbjct: 385 CLGPELESSNYVVKHYAAYASDFVRVSFVEEDWSKLPSNALSMSIRKAFFADPFRTEIYH 444
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LSILR+GIVIG KRF+FLAFSASQLRS SVWMFASN V DIREWMGCFK IRSVS
Sbjct: 445 RILSILREGIVIGAKRFQFLAFSASQLRSNSVWMFASNDKVRVDDIREWMGCFKKIRSVS 504
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QT VP +D+E IPDIEVT+DG YCFSDGIG+ISLSFAK
Sbjct: 505 KCAARMGQLFSSSVQTLPVPVQDVEVIPDIEVTSDGFGYCFSDGIGKISLSFAK 558
>gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 326 bits (836), Expect = 4e-87
Identities = 156/233 (66%), Positives = 195/233 (83%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
ILQ+++KL+STC+EP+ F++ +L L + K+ PSSS +RL+ QN+M +RV+VTPSKVY
Sbjct: 328 ILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQNMMSVHRVLVTPSKVY 387
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSNYIV+N+A H SDF+R++F +EDWGKL +AIS S+E G+F+ PY+T IYH
Sbjct: 388 CLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMSVEQGIFAKPYRTKIYH 447
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LSILRDG+VIG KRF FLAFSASQLRS SVWMFASN V A DIREWMGCF IRSVS
Sbjct: 448 RILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAEDIREWMGCFNKIRSVS 507
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFA 707
KCAARMGQLFS+S QT V + +E +PDIEVT+DG++YCFSDGIG+IS +FA
Sbjct: 508 KCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFA 560
>ref|XP_006579561.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X2 [Glycine
max]
Length = 941
Score = 325 bits (832), Expect = 1e-86
Identities = 151/234 (64%), Positives = 192/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
I +L+K+ TCYEPL FV+ QL L +K LP SS RL + N+M C+R ++TP+K+Y
Sbjct: 148 IFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIY 207
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSN++V+++A H SDF+R++F +E+W KL ++A+ST ++ GLFS P KT IY
Sbjct: 208 CLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYK 267
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+L+ILRDGIVIG KRFEFLAFSASQLRS SVW+FASN + AADIREWMGCF NIRSVS
Sbjct: 268 RILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVS 327
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QTF V ++D+E IPD+EV +DG++YCFSDGIG+IS SFA+
Sbjct: 328 KCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFAR 381
>ref|XP_006579560.1| PREDICTED: RNA-dependent RNA polymerase 2-like isoform X1 [Glycine
max]
Length = 1121
Score = 325 bits (832), Expect = 1e-86
Identities = 151/234 (64%), Positives = 192/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
I +L+K+ TCYEPL FV+ QL L +K LP SS RL + N+M C+R ++TP+K+Y
Sbjct: 328 IFLKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLPQSSQKRLTDSNIMSCHRALITPTKIY 387
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSN++V+++A H SDF+R++F +E+W KL ++A+ST ++ GLFS P KT IY
Sbjct: 388 CLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNAVSTGVQKGLFSKPLKTEIYK 447
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+L+ILRDGIVIG KRFEFLAFSASQLRS SVW+FASN + AADIREWMGCF NIRSVS
Sbjct: 448 RILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVS 507
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QTF V ++D+E IPD+EV +DG++YCFSDGIG+IS SFA+
Sbjct: 508 KCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYCFSDGIGKISQSFAR 561
>ref|XP_004508850.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cicer arietinum]
Length = 1122
Score = 324 bits (830), Expect = 2e-86
Identities = 153/234 (65%), Positives = 194/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
I Q+L+K+ STCYEPL FV+ QL L +K L SS RL + N+M C+R ++TPSK+Y
Sbjct: 328 IFQKLHKMSSTCYEPLRFVKTQLHVLSIKKKSLRPSSQKRLADNNIMSCHRALITPSKIY 387
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSN++V+++A + SDF+R++F +EDW KL +A+STS++ G+F+ P++T IY
Sbjct: 388 CLGPELETSNHVVKHFASYASDFMRITFVEEDWSKLPINAVSTSLQKGIFAKPFRTDIYK 447
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
RVL+ILRDGIVIG KRFEFLAFSASQLRS SVW+FASN V A DIREWMG F NIRSVS
Sbjct: 448 RVLTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDKVKAEDIREWMGSFTNIRSVS 507
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS+QTF + +D++ IPDIE+T+DG+NYCFSDGIG+ISLSFAK
Sbjct: 508 KCAARMGQLFSSSKQTFEMAPQDVDIIPDIELTSDGINYCFSDGIGKISLSFAK 561
>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA
polymerase, putative [Ricinus communis]
Length = 983
Score = 322 bits (826), Expect = 6e-86
Identities = 151/234 (64%), Positives = 193/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
ILQ+L+KL TCY+PL+F++ QL + K SS+ L+ N+M C+R ++TPSK+Y
Sbjct: 175 ILQKLHKLAVTCYDPLAFIKKQLHVPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIY 234
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+E+SNY+V+N+A + SDF+R++F +EDW KL ++AIS SI+ G+F+ P++T IYH
Sbjct: 235 CLGPELESSNYVVKNFASYASDFMRVTFVEEDWSKLPANAISMSIQRGIFAKPFRTGIYH 294
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LSILRDGIVIG K+FEFLAFSASQLRS SVWMFASN A +IREWMGCF I S+S
Sbjct: 295 RILSILRDGIVIGAKKFEFLAFSASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSIS 354
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS+QTFIV +D+E IPDIEVT+DG+NYCFSDGIG+ISLSFA+
Sbjct: 355 KCAARMGQLFSSSKQTFIVSPQDMEIIPDIEVTSDGINYCFSDGIGKISLSFAR 408
>ref|XP_006345040.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Length = 1119
Score = 321 bits (822), Expect = 2e-85
Identities = 152/234 (64%), Positives = 196/234 (83%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
ILQ+++KL+STC+EPL+F++ +L L + K+ SSS +RL+ ++M +RV+VTPSK+Y
Sbjct: 327 ILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLVNHSMMSVHRVLVTPSKIY 386
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSNYIV+N+AEH SDF+R++F +EDWGKL +A+S S+E G+F+ PY+T IYH
Sbjct: 387 CLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAVSMSVEQGIFAKPYRTKIYH 446
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LSILR+GIVIG KRF FLAFSASQLRS SVWMFASN V A DIREWMGCF IRS+S
Sbjct: 447 RILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWMGCFNKIRSIS 506
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFS+S QT V + +E +PDIEVT+DG++YCFSDGIG+IS +FA+
Sbjct: 507 KCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFAR 560
>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical
proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
2 [Arabidopsis thaliana]
Length = 1133
Score = 319 bits (818), Expect = 5e-85
Identities = 151/234 (64%), Positives = 192/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
IL++L++ S CY+P+ FV+ Q++S+ KH P+S+ RL EQN+M C R VTPSK+Y
Sbjct: 333 ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIY 392
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
LGPE+ET+NY+V+N+AEHVSDF+R++F +EDW KL ++A+S + + G F P +T+IY+
Sbjct: 393 LLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYN 452
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
RVLSIL +GI +G KRFEFLAFSASQLR SVWMFASN V A DIREWMGCF+ IRS+S
Sbjct: 453 RVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSIS 512
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFS+SRQT IV A+D+E IPDIEVTTDG +YCFSDGIG+ISL+FAK
Sbjct: 513 KCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAK 566
>ref|XP_004236120.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum lycopersicum]
Length = 1119
Score = 318 bits (815), Expect = 1e-84
Identities = 150/234 (64%), Positives = 194/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
ILQ+++KL+S C++PL F++ +L L + K+ PSSS +RL+ ++M +RV+VTPSK+Y
Sbjct: 327 ILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRLVNHSMMSVHRVLVTPSKIY 386
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSNYIV+N+A H SDF+R++F +EDWGKL +A+S S+E G+F+ PY+T IYH
Sbjct: 387 CLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNAVSMSVEQGIFAKPYRTKIYH 446
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LSILR+GIVIG KRF FLAFSASQLRS SVWMFASN V A DIREWMGCF IRS+S
Sbjct: 447 RILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVKAEDIREWMGCFNKIRSIS 506
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFS+S QT V + +E +PDIEVT+DG++YCFSDGIG+IS +FA+
Sbjct: 507 KCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTSDGVSYCFSDGIGKISQAFAR 560
>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 318 bits (815), Expect = 1e-84
Identities = 149/234 (63%), Positives = 192/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
IL++L++ S CY+PL FV+ Q++S+ KH P+S+ RL EQN+M C R VTPSK+Y
Sbjct: 334 ILKKLHQQSSICYDPLFFVKTQMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIY 393
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
LGPE+ET+NY+V+N+AEHVSDF+R++F +EDW KL ++A++ + + G F P++T+IY+
Sbjct: 394 LLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALTVNSKEGYFVKPFRTNIYN 453
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
RVLSIL +GI +G KRFEFLAFSASQLR SVWMFASN + A DIREWMGCF+ IRS+S
Sbjct: 454 RVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIRSIS 513
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFS+SRQT V A+D+E IPDIEVTTDG +YCFSDGIG+ISL+FAK
Sbjct: 514 KCAARMGQLFSASRQTLNVRAQDVEQIPDIEVTTDGADYCFSDGIGKISLAFAK 567
>ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 318 bits (814), Expect = 1e-84
Identities = 148/234 (63%), Positives = 189/234 (80%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
+ Q+L+K+ TCYEPL FV+ QL L +K L S RL + N+M C+R ++TP+K+Y
Sbjct: 327 VFQKLHKMSFTCYEPLKFVKTQLHVLSNKKKGLLQSPQNRLTDSNIMSCHRALITPTKIY 386
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSN++V+++A SDF+R++F +E+W KL ++A+ST ++ G+FS P KT IY
Sbjct: 387 CLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGVQKGIFSKPLKTEIYK 446
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+L+ILRDGIVIG KRFEFLAFSASQLRS SVW+FASN + AADIREWMGCF NIRSVS
Sbjct: 447 RILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAADIREWMGCFNNIRSVS 506
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QTF V + D+E IPDIEVT+DG++YCFSDGIG+IS FA+
Sbjct: 507 KCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCFSDGIGKISQCFAR 560
>gb|AHL27587.1| RNA-dependent RNA polymerase 4 [Salvia miltiorrhiza]
Length = 972
Score = 317 bits (812), Expect = 2e-84
Identities = 150/234 (64%), Positives = 193/234 (82%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
IL+ ++KL STCYEP SFV++Q ++K+LPS A RL+E N+M C+RV+VTP+K++
Sbjct: 336 ILKEMHKLHSTCYEPKSFVENQPSITTHNRKNLPS--AERLIEHNIMSCHRVLVTPTKIF 393
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+E+SNYIV+N+A++ SDF+R++F DEDWG+L A+STSI G+F+ PY+T IY
Sbjct: 394 CLGPELESSNYIVKNFADYASDFMRVTFVDEDWGRLSPGAVSTSIMKGIFAKPYRTDIYR 453
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+LS+L+DG+VIG K+FEFLAFSASQLRS SVWMFASN V A DIREWMGCF IRS+S
Sbjct: 454 RILSVLQDGLVIGDKKFEFLAFSASQLRSNSVWMFASNDHVKAEDIREWMGCFNKIRSIS 513
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QT V RD+E IP+IEV +DG+ +CFSDGIG+IS+ FA+
Sbjct: 514 KCAARMGQLFSSSMQTLKVIPRDVELIPEIEVVSDGVKHCFSDGIGKISIPFAR 567
>ref|XP_007155403.1| hypothetical protein PHAVU_003G198500g [Phaseolus vulgaris]
gi|561028757|gb|ESW27397.1| hypothetical protein
PHAVU_003G198500g [Phaseolus vulgaris]
Length = 1119
Score = 317 bits (811), Expect = 3e-84
Identities = 148/234 (63%), Positives = 190/234 (81%)
Frame = +3
Query: 9 ILQRLYKLKSTCYEPLSFVQHQLESLRGDQKHLPSSSATRLMEQNLMRCYRVVVTPSKVY 188
I Q+L+++ TCY+PL FV+ QL L ++ P SS RL++ N+M C+R +VTP+K+Y
Sbjct: 327 IFQKLHQMGFTCYDPLKFVKTQLHVLSNKKRSQPLSSQKRLIDNNIMSCHRALVTPTKIY 386
Query: 189 CLGPEVETSNYIVRNYAEHVSDFIRLSFADEDWGKLQSDAISTSIEHGLFSMPYKTSIYH 368
CLGPE+ETSN++V+++A SDF+R++F +E+W KL + A+ST ++ G+FS P+KT IY
Sbjct: 387 CLGPELETSNHVVKHFASCASDFMRITFVEENWNKLPNYAVSTGVQKGIFSKPFKTEIYK 446
Query: 369 RVLSILRDGIVIGGKRFEFLAFSASQLRSGSVWMFASNGTVNAADIREWMGCFKNIRSVS 548
R+L+ILRDGIVIG KRFEFLAFSASQLRS SVW+FASN V A DIREWMGCF NIRSVS
Sbjct: 447 RILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNVKATDIREWMGCFNNIRSVS 506
Query: 549 KCAARMGQLFSSSRQTFIVPARDIENIPDIEVTTDGMNYCFSDGIGRISLSFAK 710
KCAARMGQLFSSS QTF V +D+E IPDIEVT+DG++YCFSDGIG+IS SF +
Sbjct: 507 KCAARMGQLFSSSMQTFEVAPQDVEVIPDIEVTSDGVSYCFSDGIGKISQSFGR 560