BLASTX nr result
ID: Cocculus22_contig00022647
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00022647
(597 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 178 1e-51
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 168 5e-51
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 160 5e-49
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 171 5e-49
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 160 2e-48
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 157 4e-48
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 157 2e-47
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 155 3e-47
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 168 6e-47
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 156 1e-46
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 167 1e-46
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 164 2e-46
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 154 7e-46
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 154 7e-46
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 154 9e-46
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 167 1e-45
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 154 1e-45
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group] 154 1e-45
ref|XP_003606104.1| Aspartyl-tRNA synthetase [Medicago truncatul... 157 2e-45
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 153 7e-45
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 178 bits (451), Expect(2) = 1e-51
Identities = 89/132 (67%), Positives = 106/132 (80%), Gaps = 1/132 (0%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSC-VTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKAT 182
RYL+G+ VGL+Y D T C VTGY D+DYAGD+D RRS+TGY FTL G+ +SWKAT
Sbjct: 1137 RYLRGTSDVGLIYGGD----TQCLVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKAT 1192
Query: 183 LQSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYH 362
LQ TV LSTTEAEYMA+TEA KE IWL+GLVSDLGL ++ TV+CDS SAI L K+Q++H
Sbjct: 1193 LQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQVHH 1252
Query: 363 ERTKHIDVRMYF 398
ERTKHIDVR +F
Sbjct: 1253 ERTKHIDVRYHF 1264
Score = 51.6 bits (122), Expect(2) = 1e-51
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +1
Query: 427 IGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQ 531
I V K+ TA+NPA+M TKP+P +KF+HCLDL+ ++
Sbjct: 1271 IKVKKVGTADNPADMFTKPVPQSKFQHCLDLLNIR 1305
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 168 bits (426), Expect(2) = 5e-51
Identities = 80/131 (61%), Positives = 103/131 (78%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
+YL G+ +GLVY + +T + G+VDADYAG++D R+SLTGY FT G +SWKA L
Sbjct: 1033 QYLAGTRSLGLVYGGNSQLETQ-LQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANL 1091
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
QS VALSTTEAEYMA+TEAVKEAIWL+G+ +L + + K V+CD+QSAIHL KNQ +HE
Sbjct: 1092 QSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQSFHE 1151
Query: 366 RTKHIDVRMYF 398
R+KHIDVR++F
Sbjct: 1152 RSKHIDVRLHF 1162
Score = 59.3 bits (142), Expect(2) = 5e-51
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
F+RD+ A G+IGV K+ T +NP++M+TK + VTKFKHCL+LI +
Sbjct: 1162 FVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLINM 1205
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 160 bits (405), Expect(2) = 5e-49
Identities = 82/131 (62%), Positives = 100/131 (76%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL G+ L + R R + GYVD+D+AGDLD+RRSLTGY FT+ G +SWKA+L
Sbjct: 1010 RYLHGTSSACLQFGRSRDG----LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASL 1065
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
Q+TVALSTTEAEYMA++EA KEAIWLRGL ++L +FCDSQSAI LTK+QM+HE
Sbjct: 1066 QATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHE 1125
Query: 366 RTKHIDVRMYF 398
RTKHIDVR +F
Sbjct: 1126 RTKHIDVRYHF 1136
Score = 60.5 bits (145), Expect(2) = 5e-49
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
FIR V A+GD+ V KI+T +NPA+MMTKP+P TKF+ C L+GV
Sbjct: 1136 FIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1179
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 171 bits (434), Expect(2) = 5e-49
Identities = 82/132 (62%), Positives = 107/132 (81%)
Frame = +3
Query: 3 LRYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKAT 182
LRY++GS + LV+ +++ VTGY D+DYA DLD+RRS++GY FT+ GNT+SWKA
Sbjct: 412 LRYMRGSQDLNLVFTKEKEFR---VTGYCDSDYAADLDRRRSVSGYVFTVGGNTVSWKAN 468
Query: 183 LQSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYH 362
LQS ALSTTEAE+MA+TEA KEA+W++GL+ DLGL+Q+K T++CDSQSAI L+KN +H
Sbjct: 469 LQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAICLSKNSTHH 528
Query: 363 ERTKHIDVRMYF 398
ERTKHIDVR F
Sbjct: 529 ERTKHIDVRYNF 540
Score = 49.3 bits (116), Expect(2) = 5e-49
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLI 522
FIRDV GD+ V KI T+ NPA+ +TK IPV KF+ L+L+
Sbjct: 540 FIRDVVEAGDVDVLKIHTSRNPADALTKSIPVNKFQSALELL 581
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 160 bits (404), Expect(2) = 2e-48
Identities = 75/131 (57%), Positives = 99/131 (75%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
+YL G+ +GLVY + T + G+VDADY G++D R+SL GY FT+ G +SWKA L
Sbjct: 560 QYLAGTRSLGLVYGGNSQLGTQ-LQGFVDADYPGNIDTRKSLIGYVFTVFGGAVSWKANL 618
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
QS VALS TEAEYMA+TE VKE IWL+G++ +L + + K V+CD+QSAIHL KNQ +HE
Sbjct: 619 QSVVALSATEAEYMAMTEVVKEVIWLKGIIEELAMYKGKVVVYCDNQSAIHLAKNQSFHE 678
Query: 366 RTKHIDVRMYF 398
R+KHIDVR++F
Sbjct: 679 RSKHIDVRLHF 689
Score = 59.3 bits (142), Expect(2) = 2e-48
Identities = 25/44 (56%), Positives = 36/44 (81%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
F+RD+ A G+IGV K+ T +NP++M+TK + VTKFKHCL+LI +
Sbjct: 689 FVRDIIAVGEIGVGKVPTKDNPSDMLTKSLNVTKFKHCLNLINM 732
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 157 bits (397), Expect(2) = 4e-48
Identities = 79/131 (60%), Positives = 99/131 (75%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
+YL+G+ L + R R + GYVD+D+AGDLD+RRSLTGY FT+ G +SWKA+L
Sbjct: 1040 KYLRGTSSACLQFGRSRDG----LVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASL 1095
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
Q+TVALSTTE EYMA++EA KEAIWLRGL ++L +FCDSQSAI TK+QM+HE
Sbjct: 1096 QATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTKDQMFHE 1155
Query: 366 RTKHIDVRMYF 398
RTKHIDVR +F
Sbjct: 1156 RTKHIDVRYHF 1166
Score = 60.5 bits (145), Expect(2) = 4e-48
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
FIR V A+GD+ V KI+T +NPA+MMTKP+P TKF+ C L+GV
Sbjct: 1166 FIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFELCSSLVGV 1209
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 157 bits (396), Expect(2) = 2e-47
Identities = 79/131 (60%), Positives = 100/131 (76%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL+G+ L + R + + GYVD+D+AGDLD+RRSLTGY FT+ G +SWKA+L
Sbjct: 1070 RYLRGTSSACLQFGRS----SDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASL 1125
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
Q+TVALSTTEAEYMA++EA KE IWLRGL ++L +FCDSQSAI LTK+QM+HE
Sbjct: 1126 QATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHE 1185
Query: 366 RTKHIDVRMYF 398
RTKHID+R +F
Sbjct: 1186 RTKHIDLRYHF 1196
Score = 58.9 bits (141), Expect(2) = 2e-47
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
FIR V A+GD+ V KI+T +NP +MMTKP+P TKF+ C L+GV
Sbjct: 1196 FIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLVGV 1239
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 155 bits (393), Expect(2) = 3e-47
Identities = 80/131 (61%), Positives = 97/131 (74%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL G+ L + R R + GYVD+D+AGDLD+RRSL GY FT+ G +SWKA L
Sbjct: 967 RYLCGTSSACLQFGRSRDG----LVGYVDSDFAGDLDRRRSLAGYVFTIGGCAVSWKANL 1022
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
Q+TVALSTTEAEYMA++EA KE IWLRGL ++L +FCDSQSAI LTK+QM+HE
Sbjct: 1023 QATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHE 1082
Query: 366 RTKHIDVRMYF 398
RTKHIDVR +F
Sbjct: 1083 RTKHIDVRYHF 1093
Score = 59.3 bits (142), Expect(2) = 3e-47
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
FIR V +GD+ V KI+T +NPA+MMTKP+P TKF+ C L+GV
Sbjct: 1093 FIRSVITEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLVGV 1136
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 168 bits (425), Expect(2) = 6e-47
Identities = 77/132 (58%), Positives = 107/132 (81%)
Frame = +3
Query: 3 LRYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKAT 182
+RYLKG+ + LV+ +++ VTGY D++YA DLD+RRS++GY FT+ GNT+SWKA+
Sbjct: 1181 MRYLKGAQDLNLVFTKEKD---FTVTGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKAS 1237
Query: 183 LQSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYH 362
LQ VA+STTEAEY+A+ EA KEA+W++GL+ D+G+QQ+K ++CDSQSAI L+KN +YH
Sbjct: 1238 LQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAICLSKNSVYH 1297
Query: 363 ERTKHIDVRMYF 398
ERTKHIDVR +
Sbjct: 1298 ERTKHIDVRFNY 1309
Score = 45.8 bits (107), Expect(2) = 6e-47
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQR 534
+IRDV GD+ V KI T+ NP + +TK IPV KFK L ++ + +
Sbjct: 1309 YIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVLKLMK 1354
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 156 bits (394), Expect(2) = 1e-46
Identities = 80/131 (61%), Positives = 98/131 (74%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL+G+ L + R R + GYVD+D+AGDLD+ RSL GY FT+ G +SWKA+L
Sbjct: 1368 RYLRGTSSACLQFGRSRDG----LVGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASL 1423
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
Q+TVALSTTEAEYMA++EA KEAIWLRGL + L +FCDSQSAI LTK+QM+HE
Sbjct: 1424 QATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTKDQMFHE 1483
Query: 366 RTKHIDVRMYF 398
RTKHIDVR +F
Sbjct: 1484 RTKHIDVRYHF 1494
Score = 57.0 bits (136), Expect(2) = 1e-46
Identities = 29/64 (45%), Positives = 42/64 (65%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQRH*RPSEGICRVEVF 576
FIR + A+GD+ + KI+ +NPA+MMTKP+P TKF+ C L+ + P EG ++
Sbjct: 1494 FIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLVILSDANVPGEG--EHKIM 1551
Query: 577 SFIR 588
SFIR
Sbjct: 1552 SFIR 1555
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 167 bits (422), Expect(2) = 1e-46
Identities = 82/132 (62%), Positives = 106/132 (80%)
Frame = +3
Query: 3 LRYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKAT 182
LRYL G++ VGL++ ++ + CV GY D+D+AGDLDK+RS +GY FTL G ++SW++
Sbjct: 122 LRYLYGTVDVGLLFKKNCGQQ--CV-GYCDSDFAGDLDKQRSTSGYVFTLGGGSVSWRSI 178
Query: 183 LQSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYH 362
LQST+ALSTTEAEY+A TEAVKEAIWL+GL+ DLG+ QE VFCD+QSAI L KNQ YH
Sbjct: 179 LQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKNQTYH 238
Query: 363 ERTKHIDVRMYF 398
RTKHIDV+ ++
Sbjct: 239 ARTKHIDVKYHY 250
Score = 46.2 bits (108), Expect(2) = 1e-46
Identities = 19/46 (41%), Positives = 32/46 (69%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQR 534
++R++ GD+ + KI T +NP++M+TK + KF+HCL LI + R
Sbjct: 250 YVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLIQILR 295
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 164 bits (415), Expect(2) = 2e-46
Identities = 82/132 (62%), Positives = 102/132 (77%)
Frame = +3
Query: 3 LRYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKAT 182
LRY+KG++ L Y R+ D S + GY DADYA DLDKRRS+TG FTL GNTISWK+
Sbjct: 1189 LRYIKGTVDTRLCYKRNS--DFS-ICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSG 1245
Query: 183 LQSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYH 362
LQ VA S+TE EYM++TEAVKEAIWL+GL+ D G +Q+ +FCDSQSAI L+KN ++H
Sbjct: 1246 LQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHH 1305
Query: 363 ERTKHIDVRMYF 398
ERTKHIDV+ +F
Sbjct: 1306 ERTKHIDVKFHF 1317
Score = 47.8 bits (112), Expect(2) = 2e-46
Identities = 21/45 (46%), Positives = 33/45 (73%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQ 531
FIR++ A G + V+KI+T +NPA++ TK +PV KF+ LD + V+
Sbjct: 1317 FIREIIADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFLRVK 1361
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 154 bits (388), Expect(2) = 7e-46
Identities = 76/131 (58%), Positives = 98/131 (74%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL+G+ Y L + R + GYVD+DYA DLD+RRSLTGY FT+ +SW+ATL
Sbjct: 1162 RYLRGTTYSCLKFGRT----DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATL 1217
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
QS VALSTTEAEYMA+ EA KE IWL+GL ++L + ++ CDSQSAI+LTK+QM+HE
Sbjct: 1218 QSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHE 1277
Query: 366 RTKHIDVRMYF 398
RTKHID++ +F
Sbjct: 1278 RTKHIDIKYHF 1288
Score = 56.6 bits (135), Expect(2) = 7e-46
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
F+RDV +G + V KI+T +NPA+MMTKPIPV KF+ C L+G+
Sbjct: 1288 FVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGL 1331
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 154 bits (388), Expect(2) = 7e-46
Identities = 76/131 (58%), Positives = 98/131 (74%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL+G+ Y L + R + GYVD+DYA DLD+RRSLTGY FT+ +SW+ATL
Sbjct: 1162 RYLRGTTYSCLKFGRT----DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATL 1217
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
QS VALSTTEAEYMA+ EA KE IWL+GL ++L + ++ CDSQSAI+LTK+QM+HE
Sbjct: 1218 QSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHE 1277
Query: 366 RTKHIDVRMYF 398
RTKHID++ +F
Sbjct: 1278 RTKHIDIKYHF 1288
Score = 56.6 bits (135), Expect(2) = 7e-46
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
F+RDV +G + V KI+T +NPA+MMTKPIPV KF+ C L+G+
Sbjct: 1288 FVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLVGL 1331
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 154 bits (388), Expect(2) = 9e-46
Identities = 76/131 (58%), Positives = 98/131 (74%)
Frame = +3
Query: 6 RYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATL 185
RYL+G+ Y L + R + GYVD+DYA DLD+RRSLTGY FT+ +SW+ATL
Sbjct: 1164 RYLRGTTYSCLKFGRT----DKGLIGYVDSDYAADLDRRRSLTGYVFTIGSCAVSWRATL 1219
Query: 186 QSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHE 365
QS VALSTTEAEYMA+ EA KE IWL+GL ++L + ++ CDSQSAI+LTK+QM+HE
Sbjct: 1220 QSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTKDQMFHE 1279
Query: 366 RTKHIDVRMYF 398
RTKHID++ +F
Sbjct: 1280 RTKHIDIKYHF 1290
Score = 56.2 bits (134), Expect(2) = 9e-46
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
F+RDV +G + V KI T +NPA+MMTKPIPV KF+ C L+G+
Sbjct: 1290 FVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLVGL 1333
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 167 bits (422), Expect(2) = 1e-45
Identities = 81/132 (61%), Positives = 101/132 (76%)
Frame = +3
Query: 3 LRYLKGSLYVGLVYDRDRTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKAT 182
LRY+KG+L L Y + + + GY DADYA DLDKRRS+TG FTL GNTISWK+
Sbjct: 1182 LRYIKGTLKTRLCYKKS---SSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSG 1238
Query: 183 LQSTVALSTTEAEYMAVTEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYH 362
LQ VA STTE+EYM++TEAVKEAIWL+GL+ D G +Q+ +FCDSQSAI L+KN ++H
Sbjct: 1239 LQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHH 1298
Query: 363 ERTKHIDVRMYF 398
ERTKHIDV+ +F
Sbjct: 1299 ERTKHIDVKYHF 1310
Score = 42.7 bits (99), Expect(2) = 1e-45
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQ 531
FIR++ + G + V KI+T +NPA++ TK + V+KF+ L+L+ V+
Sbjct: 1310 FIREIISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLLRVK 1354
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 154 bits (389), Expect(2) = 1e-45
Identities = 75/115 (65%), Positives = 95/115 (82%)
Frame = +3
Query: 54 RTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATLQSTVALSTTEAEYMAV 233
R+RD + GYVD+D+ GDLD+RRSLTGY FT+ G +SWKA+LQ+TVALSTTEAEYMA+
Sbjct: 787 RSRDG--LIGYVDSDFPGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAI 844
Query: 234 TEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHERTKHIDVRMYF 398
+EA KEA+WLRGL ++L +FCDSQSAI+LT++QM+HERTKHIDVR +F
Sbjct: 845 SEACKEALWLRGLYTELCGVTSCINIFCDSQSAIYLTEDQMFHERTKHIDVRYHF 899
Score = 55.5 bits (132), Expect(2) = 1e-45
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQ 531
FIR V A+GD+ V KI+T +NPA+MM K +P TKF+ C L+GV+
Sbjct: 899 FIRGVIAEGDVKVCKISTHDNPADMMIKAVPATKFELCSSLVGVK 943
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
Length = 944
Score = 154 bits (389), Expect(2) = 1e-45
Identities = 75/115 (65%), Positives = 95/115 (82%)
Frame = +3
Query: 54 RTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATLQSTVALSTTEAEYMAV 233
R+RD + GYVD+D+ GDLD+RRSLTGY FT+ G +SWKA+LQ+TVALSTTEAEYMA+
Sbjct: 787 RSRDG--LIGYVDSDFPGDLDRRRSLTGYVFTIGGCAVSWKASLQATVALSTTEAEYMAI 844
Query: 234 TEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHERTKHIDVRMYF 398
+EA KEA+WLRGL ++L +FCDSQSAI+LT++QM+HERTKHIDVR +F
Sbjct: 845 SEACKEALWLRGLYTELCGVTSCINIFCDSQSAIYLTEDQMFHERTKHIDVRYHF 899
Score = 55.5 bits (132), Expect(2) = 1e-45
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGVQ 531
FIR V A+GD+ V KI+T +NPA+MM K +P TKF+ C L+GV+
Sbjct: 899 FIRGVIAEGDVKVCKISTHDNPADMMIKAVPATKFELCSSLVGVK 943
>ref|XP_003606104.1| Aspartyl-tRNA synthetase [Medicago truncatula]
gi|355507159|gb|AES88301.1| Aspartyl-tRNA synthetase
[Medicago truncatula]
Length = 803
Score = 157 bits (398), Expect(2) = 2e-45
Identities = 71/112 (63%), Positives = 91/112 (81%)
Frame = +3
Query: 63 DTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATLQSTVALSTTEAEYMAVTEA 242
D + GYVDADYAG++D R+SL+G+ FTL G TISWKA QS VALSTT+AEY+A+ E
Sbjct: 2 DEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTISWKANQQSVVALSTTQAEYIALVEG 61
Query: 243 VKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHERTKHIDVRMYF 398
VKEAIWL+G++ +LG+ QE + CDSQSAIHL +Q+YHERTKHID+R++F
Sbjct: 62 VKEAIWLKGMIGELGITQECVKIHCDSQSAIHLANHQVYHERTKHIDIRLHF 113
Score = 51.2 bits (121), Expect(2) = 2e-45
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +1
Query: 397 FIRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLI 522
F+RD+ +I V K+A+ ENPA++ TK +P ++FKHCLDLI
Sbjct: 113 FVRDMIESKEIVVEKVASEENPADVFTKSLPRSRFKHCLDLI 154
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 153 bits (387), Expect(2) = 7e-45
Identities = 77/114 (67%), Positives = 93/114 (81%)
Frame = +3
Query: 54 RTRDTSCVTGYVDADYAGDLDKRRSLTGYAFTLCGNTISWKATLQSTVALSTTEAEYMAV 233
R+RD GYVD+D+AGDLD+RRSLTGY FT+ G +SWKA+LQ+TVALSTTEAEYMA+
Sbjct: 1155 RSRDG--FVGYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAI 1212
Query: 234 TEAVKEAIWLRGLVSDLGLQQEKTTVFCDSQSAIHLTKNQMYHERTKHIDVRMY 395
+EA KEAIWLRGL ++L +FCDSQSAI LTK+QM+HERTKHIDVR +
Sbjct: 1213 SEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQMFHERTKHIDVRYH 1266
Score = 53.5 bits (127), Expect(2) = 7e-45
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +1
Query: 400 IRDVNAQGDIGVTKIATAENPANMMTKPIPVTKFKHCLDLIGV 528
IR V +GD+ V KI+T +NPA+MMTKP+ TKF+ C L+GV
Sbjct: 1268 IRGVIVEGDVKVCKISTHDNPADMMTKPVSATKFELCSSLVGV 1310