BLASTX nr result
ID: Cocculus22_contig00022608
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00022608
(310 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 117 2e-24
emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera] 111 9e-23
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 104 1e-20
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 104 1e-20
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 104 1e-20
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 103 2e-20
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 102 6e-20
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 102 6e-20
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 101 1e-19
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 101 1e-19
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 100 3e-19
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 100 3e-19
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 100 4e-19
emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera] 100 4e-19
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 99 5e-19
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 99 5e-19
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 99 5e-19
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 99 6e-19
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 98 1e-18
gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subc... 97 2e-18
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 117 bits (293), Expect = 2e-24
Identities = 58/103 (56%), Positives = 73/103 (70%), Gaps = 2/103 (1%)
Frame = -1
Query: 304 QHSSQISDS-PVDIPYSIAKDRPRRER-KSPDRYGYADFVAYALSVANEIQGEEPGTYQE 131
Q + I +S P DI SIA+DRPRR + P RYG+ D V YAL VA E+ EP TY+E
Sbjct: 737 QTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKE 796
Query: 130 AITSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
AI S DS +W AMG+E+ESLHKN+TW+LV +P G+KI+ CKW
Sbjct: 797 AILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKW 839
>emb|CAN71688.1| hypothetical protein VITISV_015290 [Vitis vinifera]
Length = 259
Score = 111 bits (278), Expect = 9e-23
Identities = 54/101 (53%), Positives = 65/101 (64%)
Frame = -1
Query: 304 QHSSQISDSPVDIPYSIAKDRPRRERKSPDRYGYADFVAYALSVANEIQGEEPGTYQEAI 125
QH ++P + Y +A+DR R+ K P RY Y D VAYA SVA I+ EEP TY E I
Sbjct: 140 QHFDDNENTPQEQQYCLARDRIMRQIKPPQRYSYVDSVAYAFSVAKNIEKEEPQTYHETI 199
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
T+ +S QW M EEIESL KN TW+LV+KP QKIV KW
Sbjct: 200 TNRESTQWIITMNEEIESLQKNLTWQLVEKPKNQKIVRYKW 240
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 104 bits (260), Expect = 1e-20
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = -1
Query: 262 YSIAKDRPRRERKSPDRYGYADFVAYALSVANEIQGEEPGTYQEAITSEDSAQWTTAMGE 83
Y++ +DR +R+ K P RYG A+ A+ALSVA EI EP TYQEAI S ++ QW A+ E
Sbjct: 733 YNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQE 792
Query: 82 EIESLHKNKTWELVKKPDGQKIVGCKW 2
E++SL KN+TWELV KP +K+VG KW
Sbjct: 793 EMDSLRKNETWELVTKPKDRKVVGSKW 819
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 104 bits (259), Expect = 1e-20
Identities = 58/102 (56%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
Frame = -1
Query: 301 HSSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEA 128
+SS + SP SIAKDRP+R K P RY A+ VAYALSVA EI+G EP TY EA
Sbjct: 973 NSSIVQQSP---KRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEA 1029
Query: 127 ITSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
I S+D +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 1030 IVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 1071
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 104 bits (259), Expect = 1e-20
Identities = 50/93 (53%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Frame = -1
Query: 271 DIP---YSIAKDRPRRERKSPDRYGYADFVAYALSVANEIQGEEPGTYQEAITSEDSAQW 101
DIP Y + +D RR + P R+GY D VAY+LS+ E+ EP Y EAI+ +DS +W
Sbjct: 414 DIPLENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAISCKDSPKW 473
Query: 100 TTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
TAM EE ESL KN TW+LV KP G K+VGCKW
Sbjct: 474 MTAMQEEFESLLKNGTWQLVDKPKGCKVVGCKW 506
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 103 bits (258), Expect = 2e-20
Identities = 53/104 (50%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Frame = -1
Query: 307 AQHSSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQ 134
+Q + + SP +SIAKD+P+R + P RY A+ VAYALSVA EI+G EP TY
Sbjct: 599 SQEKASVQQSP---KHSIAKDKPKRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYS 655
Query: 133 EAITSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
EAI S+D +W TAM +E++SL KN TW+LVK P +K++ CKW
Sbjct: 656 EAIVSDDCNRWITAMHDEMDSLEKNHTWKLVKLPKEKKLIHCKW 699
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 102 bits (254), Expect = 6e-20
Identities = 56/101 (55%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP +SIAKD+P+R K P RY A+ VAYALSVA EI+G EP TY +AI
Sbjct: 728 SSIVQQSP---KHSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAI 784
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 785 VSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 825
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 102 bits (254), Expect = 6e-20
Identities = 56/101 (55%), Positives = 69/101 (68%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP +SIAKD+P+R K P RY A+ VAYALSVA EI+G EP TY +AI
Sbjct: 765 SSIVQQSP---KHSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAI 821
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 822 VSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 862
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 101 bits (251), Expect = 1e-19
Identities = 55/101 (54%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP IAKD+P+R K P RY A+ VAYALSVA +I+G EP TY EAI
Sbjct: 549 SSTVQQSPKRF---IAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAI 605
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 606 VSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 646
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 101 bits (251), Expect = 1e-19
Identities = 52/88 (59%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Frame = -1
Query: 259 SIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAITSEDSAQWTTAMG 86
SIAK++P+R K P RY A+ VAYALSVA EI+G EP TY EAI S+D +W TAM
Sbjct: 163 SIAKEKPKRSTKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 222
Query: 85 EEIESLHKNKTWELVKKPDGQKIVGCKW 2
+E+ESL KN TWELVK P +K + CKW
Sbjct: 223 DEMESLEKNHTWELVKLPKEKKPIRCKW 250
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 100 bits (248), Expect = 3e-19
Identities = 55/101 (54%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP SIAKDRP+R K P +Y A+ V YALSVA EI+G EP TY +AI
Sbjct: 588 SSIVQQSP---KRSIAKDRPKRNTKPPRKYIEEANIVTYALSVAEEIEGNTEPSTYSDAI 644
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 645 VSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 685
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 100 bits (248), Expect = 3e-19
Identities = 56/101 (55%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP SIAKD+P+R K P RY A+ VAYALSVA EI+G EP TY EAI
Sbjct: 646 SSAVQQSP---KRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAI 702
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+ +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 703 VSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 743
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 99.8 bits (247), Expect = 4e-19
Identities = 51/88 (57%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = -1
Query: 259 SIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAITSEDSAQWTTAMG 86
SIAKD+P+R K P RY A+ VAYALSV EI+G EP TY EAI S+D +W T M
Sbjct: 570 SIAKDKPKRNTKPPQRYIEEANIVAYALSVTEEIEGNAEPSTYSEAIVSDDCNRWITTMH 629
Query: 85 EEIESLHKNKTWELVKKPDGQKIVGCKW 2
+E+ESL KN TWELVK P +K + CKW
Sbjct: 630 DEMESLEKNHTWELVKLPKEKKPIRCKW 657
>emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]
Length = 992
Score = 99.8 bits (247), Expect = 4e-19
Identities = 46/87 (52%), Positives = 62/87 (71%)
Frame = -1
Query: 262 YSIAKDRPRRERKSPDRYGYADFVAYALSVANEIQGEEPGTYQEAITSEDSAQWTTAMGE 83
YS+A+DR +R+ K P RYG A+ +ALSVA EI EP T QEAI S+++ QW + E
Sbjct: 901 YSLARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQWVKVIQE 960
Query: 82 EIESLHKNKTWELVKKPDGQKIVGCKW 2
+++SL KN+TWELV KP +K+VG KW
Sbjct: 961 KMDSLRKNETWELVTKPKDRKLVGSKW 987
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 99.4 bits (246), Expect = 5e-19
Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -1
Query: 259 SIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAITSEDSAQWTTAMG 86
SIAKD+P+R K P RY A+ VAYALSVA EI+G EP TY EAI S+D +W TAM
Sbjct: 812 SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 871
Query: 85 EEIESLHKNKTWELVKKPDGQKIVGCKW 2
+E+ESL KN TWE VK P +K + CKW
Sbjct: 872 DEMESLKKNHTWEFVKLPKEKKPIRCKW 899
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 99.4 bits (246), Expect = 5e-19
Identities = 52/88 (59%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -1
Query: 259 SIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAITSEDSAQWTTAMG 86
SIAKD+P+R K P RY A+ VAYALSVA EI+G EP TY EAI S+D +W TAM
Sbjct: 812 SIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 871
Query: 85 EEIESLHKNKTWELVKKPDGQKIVGCKW 2
+E+ESL KN TWE VK P +K + CKW
Sbjct: 872 DEMESLKKNHTWEFVKLPKEKKPIRCKW 899
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 99.4 bits (246), Expect = 5e-19
Identities = 56/101 (55%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP SIAKD+P+R K P RY A VAYALSVA +I+G EP TY EAI
Sbjct: 739 SSIVHQSP---KRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAI 795
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W TAM +E+ESL KN TWELVK P +K + CKW
Sbjct: 796 VSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 836
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 99.0 bits (245), Expect = 6e-19
Identities = 55/101 (54%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP SIAKDRP+R K P RY A+ VAYALSVA EI+G EP TY +AI
Sbjct: 676 SSIVQQSP---KRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAI 732
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W TAM +E+ESL KN +WEL K P +K + CKW
Sbjct: 733 VSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKW 773
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 98.2 bits (243), Expect = 1e-18
Identities = 55/101 (54%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Frame = -1
Query: 298 SSQISDSPVDIPYSIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAI 125
SS + SP SIAKD+P+R K P RY A+ VAYALSVA EI+G EP Y EAI
Sbjct: 509 SSIVHQSP---KRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSIYSEAI 565
Query: 124 TSEDSAQWTTAMGEEIESLHKNKTWELVKKPDGQKIVGCKW 2
S+D +W T M +E+ESL KN TWELVK P +K + CKW
Sbjct: 566 VSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIRCKW 606
>gb|ABA93547.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 546
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/88 (55%), Positives = 61/88 (69%), Gaps = 2/88 (2%)
Frame = -1
Query: 259 SIAKDRPRRERKSPDRY-GYADFVAYALSVANEIQGE-EPGTYQEAITSEDSAQWTTAMG 86
SIAKDRP+R K P RY A+ V YALSVA EI+G EP TY +A+ S+D +W TAM
Sbjct: 386 SIAKDRPKRNTKPPQRYIEEANIVVYALSVAEEIEGNAEPSTYSKAVVSDDCNRWITAMH 445
Query: 85 EEIESLHKNKTWELVKKPDGQKIVGCKW 2
+E+ES+ KN TW+LVK P K + CKW
Sbjct: 446 DEMESVEKNHTWKLVKLPKENKPIRCKW 473