BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00022467
         (488 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic st...   152   6e-35
ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus] gi|5...   152   6e-35
gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]    148   9e-34

>ref|NP_734017.2| RNA-dependent RNA polymerase [Cycas necrotic stunt virus]
          Length = 846

 Score =  152 bits (383), Expect = 6e-35
 Identities = 67/77 (87%), Positives = 73/77 (94%)
 Frame = +2

Query: 2    QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCWAMRCAPNSSSR 181
            QGQ+LGKLP+MAATQAP K+YVGLCC K FCPGHATSS+S+ KAFSQCWAMRCAPNSSSR
Sbjct: 770  QGQKLGKLPVMAATQAPNKFYVGLCCQKNFCPGHATSSDSIAKAFSQCWAMRCAPNSSSR 829

Query: 182  KVTFEPDWRKNKFLGIS 232
            KVTFEP+WRKNKFLGIS
Sbjct: 830  KVTFEPEWRKNKFLGIS 846


>ref|NP_620619.1| polyprotien 1 [Cycas necrotic stunt virus]
            gi|50400776|sp|Q8QVV0.1|POL1_CNSV RecName: Full=RNA1
            polyprotein; AltName: Full=P1; Contains: RecName:
            Full=P1A protein; Short=1A; AltName: Full=Protease
            cofactor; Contains: RecName: Full=Putative ATP-dependent
            helicase; AltName: Full=1B; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=1C-VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; AltName: Full=1D-PRO; Contains: RecName:
            Full=RNA-directed RNA polymerase; AltName: Full=1E-POL
            gi|20160382|dbj|BAB89369.1| polyprotien 1 [Cycas necrotic
            stunt virus]
          Length = 2336

 Score =  152 bits (383), Expect = 6e-35
 Identities = 67/77 (87%), Positives = 73/77 (94%)
 Frame = +2

Query: 2    QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCWAMRCAPNSSSR 181
            QGQ+LGKLP+MAATQAP K+YVGLCC K FCPGHATSS+S+ KAFSQCWAMRCAPNSSSR
Sbjct: 2260 QGQKLGKLPVMAATQAPNKFYVGLCCQKNFCPGHATSSDSIAKAFSQCWAMRCAPNSSSR 2319

Query: 182  KVTFEPDWRKNKFLGIS 232
            KVTFEP+WRKNKFLGIS
Sbjct: 2320 KVTFEPEWRKNKFLGIS 2336


>gb|AEN25475.1| polyprotein 1, partial [Cycas necrotic stunt virus]
          Length = 1984

 Score =  148 bits (373), Expect = 9e-34
 Identities = 65/77 (84%), Positives = 72/77 (93%)
 Frame = +2

Query: 2    QGQQLGKLPIMAATQAPGKYYVGLCCHKKFCPGHATSSNSVEKAFSQCWAMRCAPNSSSR 181
            QGQ+LGKLPIMAATQAP K+YVGLCC K FCPGHATSS+++ KAFSQCWAMRCAPNSSSR
Sbjct: 1908 QGQKLGKLPIMAATQAPNKFYVGLCCQKNFCPGHATSSDTIAKAFSQCWAMRCAPNSSSR 1967

Query: 182  KVTFEPDWRKNKFLGIS 232
            K+TFEP+WRKNK LGIS
Sbjct: 1968 KITFEPEWRKNKVLGIS 1984