BLASTX nr result
ID: Cocculus22_contig00021316
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00021316
(315 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004490917.1| PREDICTED: genome polyprotein-like [Cicer ar... 94 6e-26
ref|XP_004500032.1| PREDICTED: genome polyprotein-like [Cicer ar... 96 1e-25
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 99 2e-23
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 99 2e-23
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 99 2e-23
ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer ar... 93 2e-23
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 85 5e-19
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 85 5e-19
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 85 5e-19
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar... 99 6e-19
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 98 1e-18
ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer ar... 70 4e-18
ref|XP_004515135.1| PREDICTED: genome polyprotein-like [Cicer ar... 96 5e-18
ref|XP_004509900.1| PREDICTED: genome polyprotein-like [Cicer ar... 95 1e-17
ref|XP_004499473.1| PREDICTED: genome polyprotein-like [Cicer ar... 71 7e-16
gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein... 86 7e-15
ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Popu... 85 1e-14
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part... 82 8e-14
ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus] 80 2e-13
ref|XP_004509642.1| PREDICTED: genome polyprotein-like [Cicer ar... 76 5e-12
>ref|XP_004490917.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 279
Score = 94.4 bits (233), Expect(2) = 6e-26
Identities = 45/71 (63%), Positives = 53/71 (74%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEIL 39
P L IP KRILQT+ASD YW + LIE +NG YCGHASG FK +E+HYHT +KE L
Sbjct: 193 PPALKIPGNEKRILQTDASDHYWGAVLIEEINGVKYYCGHASGQFKEAEKHYHTTYKEAL 252
Query: 38 AVRNGIKKFDF 6
AV+ GI+KFDF
Sbjct: 253 AVKLGIQKFDF 263
Score = 48.9 bits (115), Expect(2) = 6e-26
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -3
Query: 310 SPLSQLLRKAPPPWFFVHTEVAQQLKQLCQSPPL*PFP 197
SPLSQLL+K PPPW HTE + LK++ Q+PP P
Sbjct: 162 SPLSQLLKKNPPPWELKHTEAVKTLKRIAQTPPALKIP 199
>ref|XP_004500032.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 313
Score = 96.3 bits (238), Expect(2) = 1e-25
Identities = 45/71 (63%), Positives = 53/71 (74%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEIL 39
P L IP GKRILQT+ SD YW + LIE +NG YCGHASG FK +E+HYHT +KE L
Sbjct: 198 PPALKIPGNGKRILQTDVSDHYWGAVLIEEINGVKHYCGHASGQFKEAEKHYHTTYKEAL 257
Query: 38 AVRNGIKKFDF 6
AV+ GI+KFDF
Sbjct: 258 AVKLGIQKFDF 268
Score = 45.8 bits (107), Expect(2) = 1e-25
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -3
Query: 310 SPLSQLLRKAPPPWFFVHTEVAQQLKQLCQSPPL*PFP 197
SPLSQLLRK PPW HTEV + +K++ Q+PP P
Sbjct: 167 SPLSQLLRKNSPPWEPKHTEVVKTVKRIAQTPPALKIP 204
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 99.0 bits (245), Expect(2) = 2e-23
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -2
Query: 209 LTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEILAVR 30
L IP+ GK+ILQT+ASD YWS+ L+E NG CG ASG FK SEQHYH+ FKEILAV+
Sbjct: 1676 LHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVK 1735
Query: 29 NGIKKFDFF 3
NGIKKF+FF
Sbjct: 1736 NGIKKFNFF 1744
Score = 35.4 bits (80), Expect(2) = 2e-23
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 313 ISPLSQLLRKAPPPWFFVHTEVAQQLKQLCQ 221
ISPLS +L+K PP W +QLKQL Q
Sbjct: 1641 ISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQ 1671
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 99.0 bits (245), Expect(2) = 2e-23
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -2
Query: 209 LTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEILAVR 30
L IP+ GK+ILQT+ASD YWS+ L+E NG CG ASG FK SEQHYH+ FKEILAV+
Sbjct: 1675 LHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVK 1734
Query: 29 NGIKKFDFF 3
NGIKKF+FF
Sbjct: 1735 NGIKKFNFF 1743
Score = 35.4 bits (80), Expect(2) = 2e-23
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 313 ISPLSQLLRKAPPPWFFVHTEVAQQLKQLCQ 221
ISPLS +L+K PP W +QLKQL Q
Sbjct: 1640 ISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQ 1670
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 99.0 bits (245), Expect(2) = 2e-23
Identities = 47/69 (68%), Positives = 55/69 (79%)
Frame = -2
Query: 209 LTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEILAVR 30
L IP+ GK+ILQT+ASD YWS+ L+E NG CG ASG FK SEQHYH+ FKEILAV+
Sbjct: 1676 LHIPSEGKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVK 1735
Query: 29 NGIKKFDFF 3
NGIKKF+FF
Sbjct: 1736 NGIKKFNFF 1744
Score = 35.4 bits (80), Expect(2) = 2e-23
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 313 ISPLSQLLRKAPPPWFFVHTEVAQQLKQLCQ 221
ISPLS +L+K PP W +QLKQL Q
Sbjct: 1641 ISPLSDMLKKKPPAWGKCQDNAVKQLKQLAQ 1671
>ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 803
Score = 93.2 bits (230), Expect(2) = 2e-23
Identities = 44/71 (61%), Positives = 52/71 (73%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEIL 39
P L IP GKRILQT+A D YW + LIE ++G YCGHASG FK +E+HYHT +KE L
Sbjct: 703 PPALKIPGNGKRILQTDAIDHYWGAILIEEIDGVKHYCGHASGQFKEAEKHYHTTYKEAL 762
Query: 38 AVRNGIKKFDF 6
AV+ GI KFDF
Sbjct: 763 AVKLGIHKFDF 773
Score = 41.2 bits (95), Expect(2) = 2e-23
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = -3
Query: 310 SPLSQLLRKAPPPWFFVHTEVAQQLKQLCQSPPL*PFP 197
SPLSQLL+K PW HTE + LK++ Q+PP P
Sbjct: 672 SPLSQLLKKNSSPWEPKHTEAVKTLKRIAQTPPALKIP 709
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 84.7 bits (208), Expect(2) = 5e-19
Identities = 41/71 (57%), Positives = 52/71 (73%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEIL 39
P T PT K+ILQT+ASD YWS+ L+E NG +C HASG FK SE++YH ++KEIL
Sbjct: 1628 PKHQTHPT--KKILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEIL 1685
Query: 38 AVRNGIKKFDF 6
V+ GIKKF+F
Sbjct: 1686 TVKYGIKKFEF 1696
Score = 35.0 bits (79), Expect(2) = 5e-19
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 304 LSQLLRKAPPPWFFVHTEVAQQLKQLCQSPP 212
LS LL+K PP W HT LK++ Q+PP
Sbjct: 1597 LSALLKKKPPEWNDDHTNAVTTLKKIAQNPP 1627
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 84.7 bits (208), Expect(2) = 5e-19
Identities = 41/71 (57%), Positives = 52/71 (73%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEIL 39
P T PT K+ILQT+ASD YWS+ L+E NG +C HASG FK SE++YH ++KEIL
Sbjct: 1615 PKHQTHPT--KKILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEIL 1672
Query: 38 AVRNGIKKFDF 6
V+ GIKKF+F
Sbjct: 1673 TVKYGIKKFEF 1683
Score = 35.0 bits (79), Expect(2) = 5e-19
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 304 LSQLLRKAPPPWFFVHTEVAQQLKQLCQSPP 212
LS LL+K PP W HT LK++ Q+PP
Sbjct: 1584 LSALLKKKPPEWNDDHTNAVTTLKKIAQNPP 1614
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 84.7 bits (208), Expect(2) = 5e-19
Identities = 41/71 (57%), Positives = 52/71 (73%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEIL 39
P T PT K+ILQT+ASD YWS+ L+E NG +C HASG FK SE++YH ++KEIL
Sbjct: 1517 PKHQTHPT--KKILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEIL 1574
Query: 38 AVRNGIKKFDF 6
V+ GIKKF+F
Sbjct: 1575 TVKYGIKKFEF 1585
Score = 35.0 bits (79), Expect(2) = 5e-19
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -3
Query: 304 LSQLLRKAPPPWFFVHTEVAQQLKQLCQSPP 212
LS LL+K PP W HT LK++ Q+PP
Sbjct: 1486 LSALLKKKPPEWNDDHTNAVTTLKKIAQNPP 1516
>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1170
Score = 99.0 bits (245), Expect = 6e-19
Identities = 47/79 (59%), Positives = 57/79 (72%)
Frame = -2
Query: 242 AIETAMSIPSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHY 63
A++ P L IP GKRILQT+ASD YW + LIE +NG YCGHASG FK +E+HY
Sbjct: 952 ALKRIAQTPPALKIPGNGKRILQTDASDHYWGAVLIEEINGVKHYCGHASGQFKEAEKHY 1011
Query: 62 HTVFKEILAVRNGIKKFDF 6
HT +KE LAV+ GI+KFDF
Sbjct: 1012 HTTYKEALAVKLGIQKFDF 1030
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 97.8 bits (242), Expect = 1e-18
Identities = 50/82 (60%), Positives = 59/82 (71%), Gaps = 3/82 (3%)
Frame = -2
Query: 242 AIETAMSI---PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSE 72
AI+T I P L IP GKRILQT+ASD YW + LIE +NG YCGHASG FK +E
Sbjct: 1616 AIKTLKRISQTPPALKIPGNGKRILQTDASDHYWGAVLIEEINGVKYYCGHASGQFKEAE 1675
Query: 71 QHYHTVFKEILAVRNGIKKFDF 6
+HYHT +KE LAV+ GI+KFDF
Sbjct: 1676 KHYHTTYKEALAVKLGIQKFDF 1697
>ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1645
Score = 70.5 bits (171), Expect(2) = 4e-18
Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Frame = -2
Query: 218 PSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQH---YHTVFK 48
P L IP GKRILQT+ASD YW + LIE +NG YCGHASG FK +E+H V
Sbjct: 1572 PPALKIPGNGKRILQTDASDHYWGAVLIEEINGVKYYCGHASGQFKEAEKHCPLMEAVEA 1631
Query: 47 EILAVRNGIKK 15
+ AV N I++
Sbjct: 1632 RLSAVENSIRR 1642
Score = 46.2 bits (108), Expect(2) = 4e-18
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -3
Query: 310 SPLSQLLRKAPPPWFFVHTEVAQQLKQLCQSPPL*PFP 197
SPLSQLLRK PPPW +TE + LK++ Q+PP P
Sbjct: 1541 SPLSQLLRKNPPPWEPKYTEAVKTLKRIAQTPPALKIP 1578
>ref|XP_004515135.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 159
Score = 95.9 bits (237), Expect = 5e-18
Identities = 47/79 (59%), Positives = 56/79 (70%)
Frame = -2
Query: 242 AIETAMSIPSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHY 63
A++ P L IP GKRILQTNASD YW + LIE +NG Y GHASG FK +E+HY
Sbjct: 76 ALKRIAQTPPALKIPGNGKRILQTNASDHYWGALLIEDINGVKHYYGHASGQFKEAEKHY 135
Query: 62 HTVFKEILAVRNGIKKFDF 6
HT +KE LAV+ GI+KFDF
Sbjct: 136 HTSYKEALAVKLGIQKFDF 154
>ref|XP_004509900.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 181
Score = 94.7 bits (234), Expect = 1e-17
Identities = 45/79 (56%), Positives = 55/79 (69%)
Frame = -2
Query: 242 AIETAMSIPSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHY 63
A++ P L IP GKRILQT+ASD YW + LIE + G YCGHASG FK +E+HY
Sbjct: 94 ALKRIAHTPPALKIPGNGKRILQTDASDHYWGTILIEEIKGIKHYCGHASGQFKEAEKHY 153
Query: 62 HTVFKEILAVRNGIKKFDF 6
HT +KE LAV+ GI+ FDF
Sbjct: 154 HTTYKEALAVKLGIQNFDF 172
>ref|XP_004499473.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 441
Score = 70.9 bits (172), Expect(2) = 7e-16
Identities = 33/61 (54%), Positives = 40/61 (65%)
Frame = -2
Query: 242 AIETAMSIPSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHY 63
A++ IP + I GKRILQTN D YW + LIE +NG YCGHASG FK +E+HY
Sbjct: 366 ALKKVAQIPLAMKILGNGKRILQTNVIDHYWGALLIEEINGVKHYCGHASGQFKEAEKHY 425
Query: 62 H 60
H
Sbjct: 426 H 426
Score = 38.5 bits (88), Expect(2) = 7e-16
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = -3
Query: 310 SPLSQLLRKAPPPWFFVHTEVAQQLKQLCQSP 215
SPLS LLRK PPW HT+V + LK++ Q P
Sbjct: 343 SPLSLLLRKNHPPWETKHTKVVKALKKVAQIP 374
>gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein clearing virus]
Length = 758
Score = 85.5 bits (210), Expect = 7e-15
Identities = 39/64 (60%), Positives = 49/64 (76%)
Frame = -2
Query: 203 IPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEILAVRNG 24
IP+ GKRILQT+ASD YW + L+E + H CG+ SG FK SE+HYH+ FKEILAV+ G
Sbjct: 285 IPSNGKRILQTDASDEYWGAILLEERDNHRQICGYKSGHFKDSEKHYHSTFKEILAVKRG 344
Query: 23 IKKF 12
I+KF
Sbjct: 345 IEKF 348
>ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Populus trichocarpa]
gi|550349213|gb|EEE85243.2| hypothetical protein
POPTR_0001s38890g [Populus trichocarpa]
Length = 309
Score = 84.7 bits (208), Expect = 1e-14
Identities = 39/60 (65%), Positives = 46/60 (76%)
Frame = -2
Query: 185 RILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFDF 6
RILQT+ SD YWS L+E NGH CG+ SGSFK SE HYH+ FKEILAV+ GI+KF+F
Sbjct: 24 RILQTDVSDKYWSDVLLEDKNGHRHICGYKSGSFKESETHYHSTFKEILAVKYGIQKFEF 83
>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
gi|557090298|gb|ESQ31006.1| hypothetical protein
EUTSA_v10012231mg, partial [Eutrema salsugineum]
Length = 1904
Score = 82.0 bits (201), Expect = 8e-14
Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = -2
Query: 263 CTYRSCSAIETAMSIPSPLTIPTLGKRILQTNASDLYWSSFLIEY-LNGHLGYCGHASGS 87
CT + ++PS L IP+ GKRILQT+ASD YW + L+E G CG+ SG
Sbjct: 1505 CTEAVKELKRISKTLPS-LKIPSKGKRILQTDASDCYWGAVLLEKDEKGKRSICGYKSGV 1563
Query: 86 FKTSEQHYHTVFKEILAVRNGIKKFD 9
FK SE+HYH+ +KEILAV+ GI+KF+
Sbjct: 1564 FKDSEKHYHSTYKEILAVKRGIEKFE 1589
>ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus]
Length = 124
Score = 80.5 bits (197), Expect = 2e-13
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = -2
Query: 182 ILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFDF 6
ILQT+ASD YWS+ L+E NG +C HASG FK SE++YH ++KEIL V+ GIKKF+F
Sbjct: 1 ILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEILTVKYGIKKFEF 59
>ref|XP_004509642.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 168
Score = 75.9 bits (185), Expect = 5e-12
Identities = 37/70 (52%), Positives = 45/70 (64%)
Frame = -2
Query: 242 AIETAMSIPSPLTIPTLGKRILQTNASDLYWSSFLIEYLNGHLGYCGHASGSFKTSEQHY 63
A++ P L IP GKR LQT+ SD Y + LIE +NG YCGHA G FK +E+HY
Sbjct: 94 ALKRIAQTPPALKIPRNGKRTLQTDVSDHYRGAVLIEEINGVKHYCGHACGQFKEAEKHY 153
Query: 62 HTVFKEILAV 33
HT +KE LAV
Sbjct: 154 HTTYKEALAV 163