BLASTX nr result
ID: Cocculus22_contig00021221
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00021221
(484 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 77 3e-12
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 74 2e-11
gb|AAG51106.1|AC069144_3 hypothetical protein [Arabidopsis thali... 71 2e-10
gb|AAT67565.1| hypothetical protein At1G54955 [Arabidopsis thali... 71 2e-10
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 67 2e-09
gb|AAF99801.1|AC012463_18 T2E6.13 [Arabidopsis thaliana] 67 3e-09
gb|AAF79357.1|AC007887_16 F15O4.34 [Arabidopsis thaliana] 65 1e-08
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 65 1e-08
gb|ABD65629.1| hypothetical protein 23.t00046 [Brassica oleracea] 64 2e-08
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 63 4e-08
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 63 5e-08
gb|ABW81026.1| reverse transcriptase [Arabidopsis lyrata subsp. ... 62 6e-08
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 62 6e-08
dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like ... 62 1e-07
dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidop... 62 1e-07
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 62 1e-07
ref|XP_002877500.1| predicted protein [Arabidopsis lyrata subsp.... 61 1e-07
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 60 3e-07
ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcript... 60 3e-07
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 60 3e-07
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 76.6 bits (187), Expect = 3e-12
Identities = 37/108 (34%), Positives = 56/108 (51%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R+ N T C+FC E DHLFF+C ++ ++W +A+ ++D F W AV I
Sbjct: 808 RMMTWNNGTPTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDRFSTKWSAVVNYI 867
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTI 159
+ S + + FQ +I+ +W ERN RR K RS +NL+ I
Sbjct: 868 S-DSQPDRIQSFLSRYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQI 914
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 73.9 bits (180), Expect = 2e-11
Identities = 36/122 (29%), Positives = 60/122 (49%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R+ +S C+FC ++ DHLFF C ++ +VW V A+ F W + +
Sbjct: 1310 RMANWKGVSSGSCVFCNHPTKSRDHLFFNCPYSSEVWTVTAKNILTTRFTTDWHLLLNTV 1369
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKIHSTS 123
+++ +++ AFQA++Y +W ERN RR N + S T L+ I V + S
Sbjct: 1370 S-SLQQNRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLIGWIDKQVRNILSSIR 1428
Query: 122 LK 117
+K
Sbjct: 1429 IK 1430
>gb|AAG51106.1|AC069144_3 hypothetical protein [Arabidopsis thaliana]
gi|60547645|gb|AAX23786.1| hypothetical protein
At1g54955 [Arabidopsis thaliana]
Length = 137
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/104 (35%), Positives = 53/104 (50%)
Frame = -3
Query: 446 CIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKIRIQFASTNLDSV 267
C+ C E DHLFF C F ++W V+A+ F+D + W + + T L+S
Sbjct: 12 CVLCDNNIETRDHLFFSCPFVSEIWAVIAKGIFKDKYSTDWSQLLDHVS-NANQTQLESF 70
Query: 266 IIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKI 135
+ + AFQAT+Y +W ERN RR + S T L I + KI
Sbjct: 71 LSRSAFQATVYTIWGERNGRRHGEEPHSTTLLTTWIDKHIRNKI 114
>gb|AAT67565.1| hypothetical protein At1G54955 [Arabidopsis thaliana]
Length = 137
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/104 (35%), Positives = 53/104 (50%)
Frame = -3
Query: 446 CIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKIRIQFASTNLDSV 267
C+ C E DHLFF C F ++W V+A+ F+D + W + + T L+S
Sbjct: 12 CVLCDNNIETRDHLFFSCPFVSEIWAVIAKGIFKDKYSTDWSQLLDHVS-NANQTQLESY 70
Query: 266 IIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKI 135
+ + AFQAT+Y +W ERN RR + S T L I + KI
Sbjct: 71 LSRSAFQATVYTIWGERNGRRHGEEPHSTTLLTTWIDKHIRNKI 114
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 67.4 bits (163), Expect = 2e-09
Identities = 38/111 (34%), Positives = 57/111 (51%)
Frame = -3
Query: 449 DCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKIRIQFASTNLDS 270
DCIFC E DHLFF C+F +WV +AR F+ + + W ++ + I ++
Sbjct: 1097 DCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFKTQYTSHWQSIIEAI-TNSQHHRVEW 1155
Query: 269 VIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKIHSTSLK 117
+ + FQATIY +W ERN RR + + LV I + ++ S LK
Sbjct: 1156 FLRRYVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQLSSICLK 1206
>gb|AAF99801.1|AC012463_18 T2E6.13 [Arabidopsis thaliana]
Length = 165
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/105 (30%), Positives = 53/105 (50%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R++ N + C FC E DHLFF C++A +W +A+ + F W A+ I
Sbjct: 28 RMQFWNNGSDVKCTFCSTSIETRDHLFFSCSYASSIWTAIAKNVLQHRFSTDWQAIVNYI 87
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLV 168
+ + + S + + FQ T++ +W ERN RR + R+ NL+
Sbjct: 88 S-ETQTDRIRSFLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLI 131
>gb|AAF79357.1|AC007887_16 F15O4.34 [Arabidopsis thaliana]
Length = 236
Score = 65.1 bits (157), Expect = 1e-08
Identities = 38/105 (36%), Positives = 50/105 (47%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R+ N S C+ C E DHLFF C FA VW +AR + D F W + + I
Sbjct: 132 RMTHWNGGQSAACVLCHNAPETRDHLFFSCDFASIVWSNLARGIYGDRFSTHWQDLIQAI 191
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLV 168
+ T LDS + FQAT++ +W ERN R K S L+
Sbjct: 192 SGSW-MTPLDSFFARYLFQATVHTIWRERNGRNHGEKPNSAALLI 235
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 65.1 bits (157), Expect = 1e-08
Identities = 31/105 (29%), Positives = 52/105 (49%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R++ N + C FC E DHLFF C++A +W +A+ + F W + I
Sbjct: 492 RMQLWNNGSDVKCTFCSTSIETRDHLFFSCSYASAIWTAIAKNVLQHRFSTDWQTIVNYI 551
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLV 168
+ + + S + + FQ T++ +W ERN RR + R+ NL+
Sbjct: 552 S-ETQTDRIRSFLSRYIFQLTVHTVWKERNDRRHGEEPRTSANLI 595
>gb|ABD65629.1| hypothetical protein 23.t00046 [Brassica oleracea]
Length = 147
Score = 64.3 bits (155), Expect = 2e-08
Identities = 27/93 (29%), Positives = 46/93 (49%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R+R NM C+ C E DHLFFKC ++ Q+W + + E F W + +
Sbjct: 10 RMRGWNMNVDTSCVLCQEPLETADHLFFKCPYSTQIWEALMKGVMESRFTMEWERIITFL 69
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRR 204
R + + + + Q+T++ +W+ERN R+
Sbjct: 70 RESSNWSKVKLFVSRYILQSTVHAIWMERNRRK 102
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 63.2 bits (152), Expect = 4e-08
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = -3
Query: 482 RLRKMNMT--TSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAK 309
R+ K N + S +C+ C + +HLFF C++A VW +A+ ++ + W +
Sbjct: 733 RMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAALAKGIWKTRYSTRWSHLLT 792
Query: 308 KIRIQFASTNLDSVIIKLAFQATIYHLWIERNLRR 204
I F ++ + + FQATIYH+W ERN RR
Sbjct: 793 HISTHF-QDRVEGFLTRYIFQATIYHVWRERNGRR 826
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 62.8 bits (151), Expect = 5e-08
Identities = 29/105 (27%), Positives = 54/105 (51%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
++ + N S C+ C E +HLFF C + ++W +A+ ++ F +W + +
Sbjct: 516 KMLQWNRRLSPTCVLCNNNIETRNHLFFSCCYTAEIWENLAKNIYKAKFSTNWSTILTSV 575
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLV 168
+ + +S + + FQATI+ +W ERN RR + S T+L+
Sbjct: 576 STTWRN-RTESFLARYIFQATIHTIWHERNGRRHGERSNSATHLI 619
>gb|ABW81026.1| reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 181
Score = 62.4 bits (150), Expect = 6e-08
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R+ K N C+FC +E +DH+FF C ++ VW + +NF W+ +I
Sbjct: 71 RMIKWNQNVDASCVFCKDSRETKDHMFFNCPYSRTVWKELVSGLLLNNFTEKWL----EI 126
Query: 302 RIQFASTNLDSV---IIKLAFQATIYHLWIERNLRR 204
A +LD I++ FQ TI+ +W ERN RR
Sbjct: 127 MTMLAKKDLDKTKGFIVRYVFQNTIHSIWRERNDRR 162
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/124 (29%), Positives = 56/124 (45%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
R+ NM CI C E+ DHLFF C FA ++W +A+ + F W + +
Sbjct: 335 RMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNTCFYTDWQTIINNV 394
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKIHSTS 123
+ + + + Q TIY LW ERN R+ S + L+ I D + + H +
Sbjct: 395 SRNWPD-RIAGFLARCILQVTIYTLWRERNERKHGASPNSSSRLISWI--DKHIRNHLMA 451
Query: 122 LKLS 111
+K S
Sbjct: 452 IKQS 455
>dbj|BAB01431.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 637
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
RL K N C+FC E DHLFF C ++ Q+W+ +A+ +SW + +
Sbjct: 309 RLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGRNVSSWSLITPHL 368
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRR 204
+ + L ++ FQA I+ LW ERN RR
Sbjct: 369 -LDSSQPYLHVFTLRYTFQALIHSLWRERNGRR 400
>dbj|BAE98403.1| putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 278
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/93 (33%), Positives = 46/93 (49%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKI 303
RL K N C+FC E DHLFF C ++ Q+W+ +A+ +SW + +
Sbjct: 141 RLYKWNSEARATCVFCDEELETRDHLFFSCPYSSQIWIALAKGLLNGRNVSSWSLITPHL 200
Query: 302 RIQFASTNLDSVIIKLAFQATIYHLWIERNLRR 204
+ + L ++ FQA I+ LW ERN RR
Sbjct: 201 -LDSSQPYLHVFTLRYTFQALIHSLWRERNGRR 232
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 61.6 bits (148), Expect = 1e-07
Identities = 26/81 (32%), Positives = 47/81 (58%)
Frame = -3
Query: 446 CIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKIRIQFASTNLDSV 267
C+ C E+ DHLFF C+F+ +VW + A+ ++ ++ W + KI+ + ++S
Sbjct: 1324 CLLCRNATESRDHLFFSCSFSSEVWEMSAKSIYKSSYSTDWRHLLTKIQENW-KDRVESF 1382
Query: 266 IIKLAFQATIYHLWIERNLRR 204
I + FQ ++Y +W ERN R+
Sbjct: 1383 IARYIFQVSVYAIWRERNRRK 1403
>ref|XP_002877500.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323338|gb|EFH53759.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 136
Score = 61.2 bits (147), Expect = 1e-07
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Frame = -3
Query: 446 CIFCWVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKIRIQFASTNL--- 276
C+FC E+ DHLFF C + F +W + W +R ST L
Sbjct: 10 CVFCGEPTESRDHLFFACPYTFTIWFELTSPLLRHKLTPDWSQTLLSLR----STQLKLH 65
Query: 275 DSVIIKLAFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKIHS 129
D + +LAFQA++Y LW ERN R S T ++ TI + +I S
Sbjct: 66 DKTLARLAFQASVYLLWRERNGRIHNQCSNSSTTMLKTIDKAIKERISS 114
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/120 (27%), Positives = 54/120 (45%)
Frame = -3
Query: 434 WVGKENEDHLFFKCTFAFQVWVVVARLCFEDNFPASWVAVAKKIRIQFASTNLDSVIIKL 255
W E +HLFF C ++F +W V C W + + +L VI+KL
Sbjct: 837 WFVAETHNHLFFDCAYSFGIWTHVLSKCDVSKPLLPWSDFIFWVATNWKGNSLPVVILKL 896
Query: 254 AFQATIYHLWIERNLRRF*NKIRSVTNLVDTILWDVNAKIHSTSLKLSIIDPFLAEKWNL 75
A QA +Y +W ERN RRF N+ + I+ + + S + + + ++ +W L
Sbjct: 897 ALQAVVYAIWRERNNRRFRNESLPPAVVFKGIVESIRLCLLSWKIPHTPSNAYIFHEWRL 956
>ref|NP_176271.1| RNA-directed DNA polymerase (reverse transcriptase)-related protein
[Arabidopsis thaliana] gi|332195602|gb|AEE33723.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related protein [Arabidopsis thaliana]
Length = 289
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVW-VVVARLCFEDNFPASWVAVAKK 306
RL S DC C + E+ DHL F C FA QVW + +RLC SW +
Sbjct: 157 RLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQVWRLAFSRLCPRQRLFCSWAELLSW 216
Query: 305 IRIQFASTNLDSVIIKLAFQATIYHLWIERN 213
+R +S++ S++ K++ A IY++W +RN
Sbjct: 217 MR--SSSSSAPSLLRKVSAHAIIYNIWRQRN 245
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 60.1 bits (144), Expect = 3e-07
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Frame = -3
Query: 482 RLRKMNMTTSDDCIFCWVGKENEDHLFFKCTFAFQVWVVVAR---LC-FEDNFPASWVAV 315
++ N S C+ C + E+ DHLFF C F+ +W + R LC + NFPA + +
Sbjct: 1269 KMASWNRGISSVCVLCNISAESRDHLFFSCNFSSHIWDRLTRRLLLCRYTTNFPALLLLL 1328
Query: 314 AKKIRIQFASTNLDSVIIKLAFQATIYHLWIERNLRR 204
+ + F+ T +++ FQATI+ LW ERN RR
Sbjct: 1329 SGQ---DFSGTK--RFLLRYVFQATIHTLWRERNKRR 1360