BLASTX nr result
ID: Cocculus22_contig00021202
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00021202
(371 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s... 92 7e-17
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 91 2e-16
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 91 2e-16
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 86 7e-15
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 86 7e-15
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family... 84 2e-14
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S... 84 2e-14
gb|EXB53230.1| DNA-directed RNA polymerase III subunit RPC1 [Mor... 84 3e-14
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s... 84 3e-14
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 84 3e-14
ref|XP_004166766.1| PREDICTED: DNA-directed RNA polymerase III s... 84 3e-14
ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutr... 82 6e-14
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo... 82 8e-14
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g... 82 8e-14
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s... 81 1e-13
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 81 1e-13
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus... 80 2e-13
gb|EYU23205.1| hypothetical protein MIMGU_mgv11b022747mg, partia... 80 2e-13
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 80 3e-13
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali... 80 3e-13
>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 1400
Score = 92.0 bits (227), Expect = 7e-17
Identities = 43/58 (74%), Positives = 50/58 (86%)
Frame = +1
Query: 196 LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDP 369
L+FTK+PYIEDVGPRKIKS+QF+TFSGAEI K AEVQV+ YYD+TRKP+ LLDP
Sbjct: 9 LVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 66
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = +1
Query: 184 VQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALL 363
++D + FTKEPYIEDVGPRKI+SI+F+ FS +EI KAAEVQVW YYD+ RKP+ N LL
Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60
Query: 364 DP 369
DP
Sbjct: 61 DP 62
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 90.9 bits (224), Expect = 2e-16
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = +1
Query: 184 VQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALL 363
++D + FTKEPYIEDVGPRKI+SI+F+ FS +EI KAAEVQVW YYD+ RKP+ N LL
Sbjct: 1 MKDGIQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLL 60
Query: 364 DP 369
DP
Sbjct: 61 DP 62
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X2 [Solanum tuberosum]
Length = 1243
Score = 85.5 bits (210), Expect = 7e-15
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
M +Q+ L TK+PYIEDVGPRKIKSI+FS FS +EI K+AEV+V+ YY+ST+KP+ N
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 355 ALLDP 369
LLDP
Sbjct: 61 GLLDP 65
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Solanum tuberosum]
Length = 1394
Score = 85.5 bits (210), Expect = 7e-15
Identities = 41/65 (63%), Positives = 52/65 (80%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
M +Q+ L TK+PYIEDVGPRKIKSI+FS FS +EI K+AEV+V+ YY+ST+KP+ N
Sbjct: 1 MKRIQNSLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQN 60
Query: 355 ALLDP 369
LLDP
Sbjct: 61 GLLDP 65
>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 84.3 bits (207), Expect = 2e-14
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
MA +++L TKEP+IEDVG R+IKSI+FS SG+EIRK+AEVQVW++ YD P+PN
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPN 60
Query: 355 ALLDP 369
LLDP
Sbjct: 61 GLLDP 65
>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein
SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 84.0 bits (206), Expect = 2e-14
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
MA +++L TKEP+IEDVG R+IKSI+FS SG+EIRK+AEVQVW++ Y KP+PN
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPN 60
Query: 355 ALLDP 369
LLDP
Sbjct: 61 GLLDP 65
>gb|EXB53230.1| DNA-directed RNA polymerase III subunit RPC1 [Morus notabilis]
Length = 232
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/68 (58%), Positives = 51/68 (75%), Gaps = 3/68 (4%)
Frame = +1
Query: 175 MAIVQDQ---LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKP 345
MA +DQ +LFTK+P++EDVGPR+IKS+QF+ S +EI K AEVQVW YYD RKP
Sbjct: 1 MAASRDQAQNILFTKQPFVEDVGPRRIKSMQFTVQSASEISKMAEVQVWKGQYYDPNRKP 60
Query: 346 LPNALLDP 369
+ + LLDP
Sbjct: 61 VEDGLLDP 68
>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Setaria italica]
Length = 1397
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/64 (62%), Positives = 51/64 (79%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
MA +++L TKEP+IEDVG R+IKSI+FS SG+EIRK+AEVQVW+S Y+ KP+PN
Sbjct: 1 MAKPEEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPN 60
Query: 355 ALLD 366
LLD
Sbjct: 61 GLLD 64
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Solanum lycopersicum]
Length = 1390
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1
Query: 187 QDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLD 366
Q+ L TK+PYIEDVGPRKIKSI+FS FS +EI K AEV+V+ YY+ST+KP+ N LLD
Sbjct: 5 QESLQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLD 64
Query: 367 P 369
P
Sbjct: 65 P 65
>ref|XP_004166766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like,
partial [Cucumis sativus]
Length = 286
Score = 83.6 bits (205), Expect = 3e-14
Identities = 41/58 (70%), Positives = 48/58 (82%)
Frame = +1
Query: 196 LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDP 369
L+FTK+PYIEDVGPRKI +QF+TFSGAEI K AEVQV+ YYD+TRKP+ LLDP
Sbjct: 9 LVFTKQPYIEDVGPRKI--MQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDP 64
>ref|XP_006400888.1| hypothetical protein EUTSA_v10012446mg [Eutrema salsugineum]
gi|557101978|gb|ESQ42341.1| hypothetical protein
EUTSA_v10012446mg [Eutrema salsugineum]
Length = 1375
Score = 82.4 bits (202), Expect = 6e-14
Identities = 39/59 (66%), Positives = 45/59 (76%)
Frame = +1
Query: 193 QLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDP 369
++ FTK+PYIEDVGP KIKSI FS FS EI KAAEVQVW + YY+S KP+ LLDP
Sbjct: 6 EIEFTKQPYIEDVGPLKIKSINFSIFSDLEIMKAAEVQVWRNNYYESNFKPVEGGLLDP 64
>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 82.0 bits (201), Expect = 8e-14
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
MA +++L TKEP+IEDVG R+IKSI+FS FSG E+R++AEVQVW+S Y+ KP+PN
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 355 ALLD 366
LLD
Sbjct: 61 GLLD 64
>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
Japonica Group] gi|38347455|emb|CAD41360.2|
OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
Japonica Group] gi|116310339|emb|CAH67354.1|
OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein
OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 82.0 bits (201), Expect = 8e-14
Identities = 39/64 (60%), Positives = 51/64 (79%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
MA +++L TKEP+IEDVG R+IKSI+FS FSG E+R++AEVQVW+S Y+ KP+PN
Sbjct: 1 MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN 60
Query: 355 ALLD 366
LLD
Sbjct: 61 GLLD 64
>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 81.3 bits (199), Expect = 1e-13
Identities = 37/65 (56%), Positives = 51/65 (78%)
Frame = +1
Query: 175 MAIVQDQLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPN 354
MA +++L TKEP++EDVG R+IKS++FS FSG EIR++AE QVW++ Y + KP+PN
Sbjct: 1 MARPEEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPN 60
Query: 355 ALLDP 369
LLDP
Sbjct: 61 GLLDP 65
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 81.3 bits (199), Expect = 1e-13
Identities = 36/58 (62%), Positives = 45/58 (77%)
Frame = +1
Query: 196 LLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDP 369
+ FTKEP++ED GPRKIK+++FST S +EI K AEVQVW YYDS +KP+ LLDP
Sbjct: 9 ITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHGGLLDP 66
>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
Length = 1394
Score = 80.5 bits (197), Expect = 2e-13
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +1
Query: 202 FTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLD 366
FTK PY+EDVGPR+I+SIQFSTFS AE+ KA EV+V YYD RKP+ N LLD
Sbjct: 9 FTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLD 63
>gb|EYU23205.1| hypothetical protein MIMGU_mgv11b022747mg, partial [Mimulus
guttatus]
Length = 260
Score = 80.5 bits (197), Expect = 2e-13
Identities = 37/55 (67%), Positives = 43/55 (78%)
Frame = +1
Query: 202 FTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLD 366
FTK PY+EDVGPR+I+SIQFSTFS AE+ KA EV+V YYD RKP+ N LLD
Sbjct: 46 FTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLD 100
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +1
Query: 193 QLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDP 369
++ FTK+PYIEDVGP KIKSI FS S E+ KAAEVQVW+ G YD + KP N LLDP
Sbjct: 6 EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDP 64
>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1391
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/59 (64%), Positives = 44/59 (74%)
Frame = +1
Query: 193 QLLFTKEPYIEDVGPRKIKSIQFSTFSGAEIRKAAEVQVWSSGYYDSTRKPLPNALLDP 369
++ FTK+PYIEDVGP KIKSI FS S E+ KAAEVQVW+ G YD + KP N LLDP
Sbjct: 6 EIEFTKKPYIEDVGPLKIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDP 64