BLASTX nr result
ID: Cocculus22_contig00021116
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00021116
(959 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI21137.3| unnamed protein product [Vitis vinifera] 451 e-124
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 451 e-124
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh... 444 e-122
gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 442 e-122
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun... 441 e-121
gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus... 437 e-120
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob... 436 e-120
ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theob... 436 e-120
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob... 436 e-120
ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr... 435 e-119
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 434 e-119
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a... 430 e-118
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub... 429 e-118
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub... 429 e-117
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub... 426 e-117
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum... 426 e-117
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a... 426 e-117
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [... 424 e-116
ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV a... 423 e-116
ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Me... 421 e-115
>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
Length = 1220
Score = 451 bits (1160), Expect = e-124
Identities = 224/321 (69%), Positives = 260/321 (80%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
R+LYGDR LR I++Y+DASIITNGLSRAFSTG W+H + R ER SGVVATLRRTNPLQ
Sbjct: 483 RELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMT 542
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+TGLV+T ++P
Sbjct: 543 ADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDP 602
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L KL CGMEKL +D S L GK+K+FL+GDWVGVCED +SFVV LR++RR ++ Q
Sbjct: 603 LVDKLFDCGMEKLVDDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQ 661
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKG-NYNFQSLLGXXXXXXXXXXX 715
EIKRD+Q EVR+F+DAGRILRPLLVVENLKK+K KG ++ FQSLL
Sbjct: 662 VEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEE 721
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C TAWGIKYL +G D + YTHCELD+SFLLGLSCGIIP+ANHDHARRVLYQSEK
Sbjct: 722 EEDCSTAWGIKYLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEK 780
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN IRVDTLS
Sbjct: 781 HSQQAIGFSTTNPNIRVDTLS 801
>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
vinifera]
Length = 1198
Score = 451 bits (1160), Expect = e-124
Identities = 224/321 (69%), Positives = 260/321 (80%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
R+LYGDR LR I++Y+DASIITNGLSRAFSTG W+H + R ER SGVVATLRRTNPLQ
Sbjct: 447 RELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMT 506
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+TGLV+T ++P
Sbjct: 507 ADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDP 566
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L KL CGMEKL +D S L GK+K+FL+GDWVGVCED +SFVV LR++RR ++ Q
Sbjct: 567 LVDKLFDCGMEKLVDDTS-TKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQ 625
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKG-NYNFQSLLGXXXXXXXXXXX 715
EIKRD+Q EVR+F+DAGRILRPLLVVENLKK+K KG ++ FQSLL
Sbjct: 626 VEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEE 685
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C TAWGIKYL +G D + YTHCELD+SFLLGLSCGIIP+ANHDHARRVLYQSEK
Sbjct: 686 EEDCSTAWGIKYLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEK 744
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN IRVDTLS
Sbjct: 745 HSQQAIGFSTTNPNIRVDTLS 765
>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
Length = 821
Score = 444 bits (1142), Expect = e-122
Identities = 222/322 (68%), Positives = 259/322 (80%), Gaps = 3/322 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLY DR ++SID Y+DASIITNGLSRAFSTGAW+H Y R ER SGVVATLRRTNPLQTM
Sbjct: 68 RDLYRDREIQSIDSYLDASIITNGLSRAFSTGAWSHPYKRMERISGVVATLRRTNPLQTM 127
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RKTRQQV+YTGR+ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A GLV+TN +E
Sbjct: 128 ADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTNVLEQ 187
Query: 359 --LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDIS 532
L + CGMEKL +D S + L+GK K FL+G+WVG+C+DS SFV LR +RR ++
Sbjct: 188 ESLLRQFHVCGMEKLVDDTSSV-LEGKHKAFLDGEWVGMCKDSKSFVAKLRRKRRMMEMP 246
Query: 533 PQAEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKGNYNFQSLLGXXXXXXXXXX 712
Q EIKRD +HREVR+F DAGRILRPLL+V+ LKKIK +KG ++FQSLL
Sbjct: 247 YQVEIKRDVRHREVRIFADAGRILRPLLLVQKLKKIKELKGEFSFQSLLDNGIVEFIGAE 306
Query: 713 XXXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSE 892
C+TAWGIKYLF D+++ + YTHCELD SFLLGLSCG+IPFANHDHARRVLYQSE
Sbjct: 307 EEEDCRTAWGIKYLFSADKEKPLVKYTHCELDCSFLLGLSCGLIPFANHDHARRVLYQSE 366
Query: 893 KHSQQAIGFSTTNSKIRVDTLS 958
KHSQQAIGFSTTN IRVDT S
Sbjct: 367 KHSQQAIGFSTTNPSIRVDTNS 388
>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
Length = 1019
Score = 442 bits (1138), Expect = e-122
Identities = 220/319 (68%), Positives = 259/319 (81%), Gaps = 2/319 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYG+R + +I+HY+DASIITNGLSRAFSTGAW+H Y + ER SGVVATLRRTNPLQT+
Sbjct: 267 RDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPYKKMERISGVVATLRRTNPLQTI 326
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RKTRQQV+YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A+TGLV+TN E
Sbjct: 327 ADMRKTRQQVSYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLAITGLVSTNIEEH 386
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
KLL GMEKL +D S + L GK K+FL+G+WVGVC DS+SFV LR +RR ++ Q
Sbjct: 387 FLDKLLDSGMEKLVDDTSTL-LSGKVKVFLDGNWVGVCGDSVSFVAALRRKRRRKEVPHQ 445
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
EIKRD+QHREVRVF+DAGRILRPLLVVENL KIK K G+Y+FQSLL
Sbjct: 446 VEIKRDEQHREVRVFSDAGRILRPLLVVENLGKIKASKGGDYSFQSLLDKGVIEFIGTEE 505
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAWGI YLF + + ++ YTHCELD+SFLLGLS IIPFANHDHARRVLYQSEK
Sbjct: 506 EEDCRTAWGINYLFMENEAKATVKYTHCELDMSFLLGLSAAIIPFANHDHARRVLYQSEK 565
Query: 896 HSQQAIGFSTTNSKIRVDT 952
HSQQA+GF+TTN IRVDT
Sbjct: 566 HSQQAMGFNTTNPNIRVDT 584
>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
gi|462422378|gb|EMJ26641.1| hypothetical protein
PRUPE_ppa000410mg [Prunus persica]
Length = 1200
Score = 441 bits (1134), Expect = e-121
Identities = 218/321 (67%), Positives = 254/321 (79%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR +R I+HY+DASI+TNG+SRAFSTGAW H + R ER SGVVAT+ R NPLQTM
Sbjct: 451 RDLYGDRAVRPIEHYLDASIVTNGISRAFSTGAWCHPFKRMERMSGVVATVGRANPLQTM 510
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
D+RKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN +E
Sbjct: 511 VDMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNVLES 570
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L +LL CGMEKL +D + SL+GKDK+FLNGDWVGVCEDSLSFV+ LR RR + Q
Sbjct: 571 LIPQLLTCGMEKLVDD-TFTSLRGKDKVFLNGDWVGVCEDSLSFVLELRRMRRRKKLPHQ 629
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
EIKRD EVR+F+DAGRILRPLLVVENL K+K K G +FQ L
Sbjct: 630 VEIKRDVHQGEVRIFSDAGRILRPLLVVENLNKVKASKGGKSSFQYFLDNGIIELIGAEE 689
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C TAWGIKYLF D+ + + +THCELD+SFLLGLSCGIIP+ANHDHARRVLYQ++K
Sbjct: 690 EEDCSTAWGIKYLFMEDKGKSATKFTHCELDMSFLLGLSCGIIPYANHDHARRVLYQAQK 749
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN +RVDTLS
Sbjct: 750 HSQQAIGFSTTNPNLRVDTLS 770
>gb|EYU29217.1| hypothetical protein MIMGU_mgv1a000367mg [Mimulus guttatus]
Length = 1211
Score = 437 bits (1125), Expect = e-120
Identities = 216/322 (67%), Positives = 257/322 (79%), Gaps = 3/322 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLY DR ++SID Y+DASI+TNGLSRAFSTGAW H + R ERTSGVVAT+RRTNPLQ +
Sbjct: 455 RDLYRDREVQSIDQYLDASIVTNGLSRAFSTGAWCHPFKRMERTSGVVATIRRTNPLQAI 514
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RKTRQQV+YTGR+ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A GLV+TN +
Sbjct: 515 ADMRKTRQQVSYTGRVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASLGLVSTNLLAQ 574
Query: 359 --LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDIS 532
L K QCGMEK+ +D S + L GK K+FL+GDW+G+C+DS SFV LR +RR +I
Sbjct: 575 GNLLKKFQQCGMEKMVDDTSNL-LGGKHKVFLDGDWIGICKDSSSFVSKLRRKRRRMEIP 633
Query: 533 PQAEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKGNYNFQSLLGXXXXXXXXXX 712
Q EIKRDQ + EVR+F D+GRILRPLLVV+NLKKIK +KGN++FQSLL
Sbjct: 634 HQMEIKRDQHNGEVRIFNDSGRILRPLLVVQNLKKIKDLKGNFSFQSLLDNGIIELIGAE 693
Query: 713 XXXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSE 892
C+TAWG++YLF + + + YTHCELD SFLLGLSCGI+PF NHDHARRVLYQSE
Sbjct: 694 EEEDCQTAWGVRYLFTAELENPPVKYTHCELDSSFLLGLSCGIVPFTNHDHARRVLYQSE 753
Query: 893 KHSQQAIGFSTTNSKIRVDTLS 958
KHSQQAIG+STTNS IRVDT S
Sbjct: 754 KHSQQAIGYSTTNSIIRVDTNS 775
>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
isoform 3 [Theobroma cacao]
Length = 1073
Score = 436 bits (1120), Expect = e-120
Identities = 217/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLY DR +R I+HY+DASI+TNGLSRAFSTGAW+H Y R ER SGVVA L R NPLQTM
Sbjct: 432 RDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTM 491
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
DLRKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN ME
Sbjct: 492 VDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMES 551
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
+ KL GME+L D SL GKDK+FLNG+WVGVCEDSLSF +R +RRS + Q
Sbjct: 552 IVDKLFDSGMEELVNDTCS-SLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQ 610
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKG-NYNFQSLLGXXXXXXXXXXX 715
EIKRD+ EVR+F+D GRILRPLLVV+NL +IK KG NY FQ+LL
Sbjct: 611 VEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEE 670
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAW IKYL + + YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++K
Sbjct: 671 EEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 730
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN IRVDTLS
Sbjct: 731 HSQQAIGFSTTNPNIRVDTLS 751
>ref|XP_007011718.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
gi|508782081|gb|EOY29337.1| DNA-directed RNA polymerase
isoform 2 [Theobroma cacao]
Length = 961
Score = 436 bits (1120), Expect = e-120
Identities = 217/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLY DR +R I+HY+DASI+TNGLSRAFSTGAW+H Y R ER SGVVA L R NPLQTM
Sbjct: 205 RDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTM 264
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
DLRKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN ME
Sbjct: 265 VDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMES 324
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
+ KL GME+L D SL GKDK+FLNG+WVGVCEDSLSF +R +RRS + Q
Sbjct: 325 IVDKLFDSGMEELVNDTCS-SLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQ 383
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKG-NYNFQSLLGXXXXXXXXXXX 715
EIKRD+ EVR+F+D GRILRPLLVV+NL +IK KG NY FQ+LL
Sbjct: 384 VEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEE 443
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAW IKYL + + YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++K
Sbjct: 444 EEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 503
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN IRVDTLS
Sbjct: 504 HSQQAIGFSTTNPNIRVDTLS 524
>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 1184
Score = 436 bits (1120), Expect = e-120
Identities = 217/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLY DR +R I+HY+DASI+TNGLSRAFSTGAW+H Y R ER SGVVA L R NPLQTM
Sbjct: 432 RDLYADRTVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTM 491
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
DLRKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A TGLV+TN ME
Sbjct: 492 VDLRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLATTGLVSTNIMES 551
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
+ KL GME+L D SL GKDK+FLNG+WVGVCEDSLSF +R +RRS + Q
Sbjct: 552 IVDKLFDSGMEELVNDTCS-SLDGKDKVFLNGEWVGVCEDSLSFAAEVRRKRRSKEFPHQ 610
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKG-NYNFQSLLGXXXXXXXXXXX 715
EIKRD+ EVR+F+D GRILRPLLVV+NL +IK KG NY FQ+LL
Sbjct: 611 VEIKRDEHKGEVRIFSDGGRILRPLLVVDNLNRIKAFKGENYTFQALLEGGIIELVGTEE 670
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAW IKYL + + YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++K
Sbjct: 671 EEDCRTAWSIKYLLTDVEGKQPVKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 730
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN IRVDTLS
Sbjct: 731 HSQQAIGFSTTNPNIRVDTLS 751
>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
RNA polymerases IV and V subunit 2-like [Citrus sinensis]
gi|557545145|gb|ESR56123.1| hypothetical protein
CICLE_v10018562mg [Citrus clementina]
Length = 1198
Score = 435 bits (1118), Expect = e-119
Identities = 213/321 (66%), Positives = 255/321 (79%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR +R I++Y+DASI+TNGLSRAFSTGAW+H + RTER SG+VA L R NPLQT+
Sbjct: 442 RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 501
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
DLR+TRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+ VTGLV+T+ +EP
Sbjct: 502 VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP 561
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
+F +L GMEKL +D S SL GK K+F++GDW+GVC+DSLSFV LR +RR ++ Q
Sbjct: 562 IFEQLFNSGMEKLADDAS-YSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 620
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKG-NYNFQSLLGXXXXXXXXXXX 715
EIKRD+ EVR+F DAGRILRPLLVVEN+ KIK ++G NY FQ+LL
Sbjct: 621 VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEE 680
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C TAWGIKYL + D+ + +THCELD+SFLLGLSCGIIPFANHDHARRVLYQS+K
Sbjct: 681 EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 740
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HS QAIGF TTN IRVDTLS
Sbjct: 741 HSSQAIGFPTTNPSIRVDTLS 761
>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
subunit, putative [Ricinus communis]
Length = 1203
Score = 434 bits (1115), Expect = e-119
Identities = 218/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
+DLYGDR +R I+HY+DASI+TNGLSRAFSTGAW+H Y R ER SGVVA L R NPLQTM
Sbjct: 451 KDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTM 510
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
DLRKTR V YTG++ DARFP+PSHWG++CFLSTPDGENCGLVKN+A TGLV+ N +EP
Sbjct: 511 VDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEP 570
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L KL+ GMEK+ ED S L KDK+FLNG+WVGVCEDS FV LR RR + Q
Sbjct: 571 LIDKLIARGMEKVPED-SHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQ 629
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
EIKRD+Q +EVR+F+DAGRILRPLLVV+NL KI+ K GN FQSLL
Sbjct: 630 VEIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEE 689
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C TAWGIK+L G + SL YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQ++K
Sbjct: 690 EEDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 749
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGF TTN IRVDTLS
Sbjct: 750 HSQQAIGFPTTNPNIRVDTLS 770
>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1219
Score = 430 bits (1105), Expect = e-118
Identities = 210/323 (65%), Positives = 250/323 (77%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDL GDR ++ ++HY+DASIITNGLSRAFSTG W H Y R ER SGVVATLRRTNPLQ
Sbjct: 464 RDLCGDRQVQPLEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMT 523
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
ADLRKTRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+A GLV+T ++P
Sbjct: 524 ADLRKTRQQVTYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKP 583
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L L +CGM+KL +D S SL GK K+ L+GDWVGVCEDS FV LR +RR ++ Q
Sbjct: 584 LLETLFRCGMQKLVDD-SATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQ 642
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-----GNYNFQSLLGXXXXXXX 703
E+KRD+Q EVR+F+DAGRI+RPLLVV NLK IK +K G+Y FQ+LL
Sbjct: 643 VEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKSLKDGMKGGDYGFQTLLDKGIIELI 702
Query: 704 XXXXXXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLY 883
C+TAWG++YL + D++ ++YTHCELD+SFLLGLSCG+IPFANHDHARRVLY
Sbjct: 703 GPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLY 762
Query: 884 QSEKHSQQAIGFSTTNSKIRVDT 952
QSEKHSQQAIGFST N RVDT
Sbjct: 763 QSEKHSQQAIGFSTVNPNARVDT 785
>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
lycopersicum]
Length = 1219
Score = 429 bits (1103), Expect = e-118
Identities = 211/323 (65%), Positives = 247/323 (76%), Gaps = 6/323 (1%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDL GDR + I+HY+DASIITNGLSRAFSTG W H Y R ER SGVVATLRRTNPLQ
Sbjct: 464 RDLCGDRQVHPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMT 523
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
ADLRKTRQQV YTG++ DAR+PNPSHWGK+CFLSTPDGENCGLVKN+A GLV+T + P
Sbjct: 524 ADLRKTRQQVTYTGKVGDARYPNPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLMP 583
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L L +CGM+KL +D SL GK K+ L+GDWVGVCEDS FV LR +RR ++ Q
Sbjct: 584 LLETLFRCGMQKLVDD-CATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRKRRRNEVPHQ 642
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-----GNYNFQSLLGXXXXXXX 703
E+KRD+Q EVR+F+DAGRI+RPLLVV NLK IK + G+Y FQ+LL
Sbjct: 643 VEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALNGGVKGGDYGFQTLLDKGIIELI 702
Query: 704 XXXXXXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLY 883
C+TAWG++YL + D++ ++YTHCELD+SFLLGLSCG+IPFANHDHARRVLY
Sbjct: 703 GPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLIPFANHDHARRVLY 762
Query: 884 QSEKHSQQAIGFSTTNSKIRVDT 952
QSEKHSQQAIGFST N IRVDT
Sbjct: 763 QSEKHSQQAIGFSTVNPNIRVDT 785
>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
arietinum]
Length = 1199
Score = 429 bits (1102), Expect = e-117
Identities = 216/321 (67%), Positives = 248/321 (77%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR + I+HY+DASIITNGL RAFSTGAW H Y R ER SGVVATL RTNPLQTM
Sbjct: 449 RDLYGDRDVHQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTM 508
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
A+LR+TRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKNMAVTGLV+TN E
Sbjct: 509 AELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTES 568
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
+ +L CGME+L +D + + L KDK+FLNGDWVGVC DS SFV LR+RRR ++ Q
Sbjct: 569 ILPQLFACGMEELVDDTTAV-LGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQ 627
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKGN-YNFQSLLGXXXXXXXXXXX 715
EIKRD EVR+ +DAGRILRPLLVV NL KIK K + +FQSLL
Sbjct: 628 VEIKRDPSQEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEE 687
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
CKTAWG+ YLF G + S+ YTHCELD+SFLLGLSC ++PFANHDHARRVLYQS+K
Sbjct: 688 EEDCKTAWGVPYLF-GKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQK 746
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HS QAIGFSTTN IRVD LS
Sbjct: 747 HSSQAIGFSTTNPDIRVDALS 767
>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
lycopersicum]
Length = 1217
Score = 426 bits (1096), Expect = e-117
Identities = 210/319 (65%), Positives = 247/319 (77%), Gaps = 2/319 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR ++ I+HY+DASIITNGLSRAFSTG W H Y R ER SGVVATLRRTNPLQ
Sbjct: 466 RDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMT 525
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RK+RQQV YTG++ DAR+P+PSHWGKLCFLSTPDGENCGLVKN+A GLV+T ++P
Sbjct: 526 ADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP 585
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L +CGM+KL +D S SL GK K+ L+G+WVGVCEDS FV LR +RR ++ Q
Sbjct: 586 FLETLFRCGMQKLVDDCS-TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQ 644
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
E+KRD+ EVR+F+D GRILRPLLVV NLKKIK +K G+Y FQSLL
Sbjct: 645 VEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEE 704
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAWG++Y+ + D++ YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEK
Sbjct: 705 EEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEK 764
Query: 896 HSQQAIGFSTTNSKIRVDT 952
HSQQAIGFST N RVDT
Sbjct: 765 HSQQAIGFSTVNPNNRVDT 783
>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
Length = 1123
Score = 426 bits (1096), Expect = e-117
Identities = 210/319 (65%), Positives = 247/319 (77%), Gaps = 2/319 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR ++ I+HY+DASIITNGLSRAFSTG W H Y R ER SGVVATLRRTNPLQ
Sbjct: 460 RDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMT 519
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RK+RQQV YTG++ DAR+P+PSHWGKLCFLSTPDGENCGLVKN+A GLV+T ++P
Sbjct: 520 ADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP 579
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L +CGM+KL +D S SL GK K+ L+G+WVGVCEDS FV LR +RR ++ Q
Sbjct: 580 FLETLFRCGMQKLVDDCS-TSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQ 638
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
E+KRD+ EVR+F+D GRILRPLLVV NLKKIK +K G+Y FQSLL
Sbjct: 639 VEVKRDELQGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEE 698
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAWG++Y+ + D++ YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEK
Sbjct: 699 EEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEK 758
Query: 896 HSQQAIGFSTTNSKIRVDT 952
HSQQAIGFST N RVDT
Sbjct: 759 HSQQAIGFSTVNPNNRVDT 777
>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Solanum tuberosum]
Length = 1217
Score = 426 bits (1095), Expect = e-117
Identities = 209/319 (65%), Positives = 247/319 (77%), Gaps = 2/319 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR ++ I+HY+DASIITNGLSRAFSTG W H Y R ER SGVVATLRRTNPLQ
Sbjct: 466 RDLYGDRQVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMT 525
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
AD+RK+RQQV YTG++ DAR+P+PSHWGKLCFLSTPDGENCGLVKN+A GLV+T ++P
Sbjct: 526 ADMRKSRQQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP 585
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L +CGM+KL +D SL GK K+ L+G+WVGVCEDS FV LR +RR ++ Q
Sbjct: 586 FLETLFRCGMQKLVDD-CATSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQ 644
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
E+KRD+ EVR+F+D+GRILRPLLVV NLKKIK +K G+Y FQSLL
Sbjct: 645 VEVKRDELQGEVRIFSDSGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIEFIGPEE 704
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C+TAWG++Y+ + D++ YTHCELD+SFLLGLSCGIIPFANHDHARRVLYQSEK
Sbjct: 705 EEDCRTAWGVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEK 764
Query: 896 HSQQAIGFSTTNSKIRVDT 952
HSQQAIGFST N RVDT
Sbjct: 765 HSQQAIGFSTVNPNNRVDT 783
>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1181
Score = 424 bits (1089), Expect = e-116
Identities = 215/321 (66%), Positives = 246/321 (76%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR + I+HY+DASI+TNGL+RAFSTGAW H + ER SGVV L R NPLQTM
Sbjct: 440 RDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTM 499
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
DLRKTRQQV YTG++ DAR+P+PSHWG++CFLSTPDGENCGLVKN+AVTG+V+TN E
Sbjct: 500 IDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISES 559
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
L KL GMEKL +D + L GK K+FLNG+WVGVCEDS FV LRS RR ++ Q
Sbjct: 560 LVDKLFDSGMEKLVDD-TYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQ 618
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIK-GNYNFQSLLGXXXXXXXXXXX 715
EIKRD+Q REVR+F+DAGRILRPLLVVENL KIK K GNY F SLL
Sbjct: 619 VEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEE 678
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
C TAWGIK+L + + Y+HCELD+SFLLGLSCGIIPFANHDHARRVLYQ++K
Sbjct: 679 EEDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQK 738
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HSQQAIGFSTTN IRVDTLS
Sbjct: 739 HSQQAIGFSTTNPNIRVDTLS 759
>ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
[Glycine max]
Length = 1205
Score = 423 bits (1088), Expect = e-116
Identities = 217/324 (66%), Positives = 250/324 (77%), Gaps = 5/324 (1%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYGDR +R I+HY+DASIITNGL RAFSTGAW+H Y R ER SGVVA + RTNPLQTM
Sbjct: 448 RDLYGDRDVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTM 507
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTN---S 349
A+LR+ RQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+AVTGLV+T+
Sbjct: 508 AELRRARQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAV 567
Query: 350 MEPLFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDI 529
E + KLL CGME+L +D S L KDK+ LNGDWVGVC DS SFV LRSRRR ++
Sbjct: 568 SEYILPKLLDCGMEELVDDTS-THLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNEL 626
Query: 530 SPQAEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKGNYN-FQSLLGXXXXXXXX 706
Q EIKRDQ EVR+++DAGRILRPLLVV NL KIK K + N FQSLL
Sbjct: 627 PHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIG 686
Query: 707 XXXXXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQ 886
C TAWG++YLF G + S+ YTHCELD+SFLLGLSC ++PFANHDHARRVLYQ
Sbjct: 687 PEEEEDCCTAWGVEYLF-GKEGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQ 745
Query: 887 SEKHSQQAIGFSTTNSKIRVDTLS 958
S+KHS QAIGFSTTN IRVDTLS
Sbjct: 746 SQKHSSQAIGFSTTNPNIRVDTLS 769
>ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1237
Score = 421 bits (1083), Expect = e-115
Identities = 211/321 (65%), Positives = 252/321 (78%), Gaps = 2/321 (0%)
Frame = +2
Query: 2 RDLYGDR-LRSIDHYIDASIITNGLSRAFSTGAWAHAYNRTERTSGVVATLRRTNPLQTM 178
RDLYG+R +R I+HY+DASIITNGL RAFSTGAW H + R ER SGVVATL RTNPLQTM
Sbjct: 487 RDLYGEREVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTM 546
Query: 179 ADLRKTRQQVNYTGRIVDARFPNPSHWGKLCFLSTPDGENCGLVKNMAVTGLVTTNSMEP 358
A+LR+TRQQV YTG++ DAR+P+PSHWGK+CFLSTPDGENCGLVKN+AVTG+V+T+ E
Sbjct: 547 AELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTES 606
Query: 359 LFHKLLQCGMEKLREDPSEMSLKGKDKIFLNGDWVGVCEDSLSFVVNLRSRRRSGDISPQ 538
+ +L CGME+L +D + + L KDK+FLNGDWVGVC DS+SFV LR+RRR ++ Q
Sbjct: 607 ILPQLSDCGMEELVDDTTTV-LGKKDKVFLNGDWVGVCSDSISFVAELRTRRRRNELPHQ 665
Query: 539 AEIKRDQQHREVRVFTDAGRILRPLLVVENLKKIKMIKGNY-NFQSLLGXXXXXXXXXXX 715
EIKRDQ +EVR+ +DAGRILRPLLVV NL KIK K + +FQSLL
Sbjct: 666 VEIKRDQCQQEVRILSDAGRILRPLLVVSNLLKIKGSKSEHKSFQSLLDNGVIELIGPEE 725
Query: 716 XXXCKTAWGIKYLFQGDRDQLSLDYTHCELDLSFLLGLSCGIIPFANHDHARRVLYQSEK 895
KTAWG++YLF G + S+ YTHCELD+SFLLGLSC ++PFANHDHARRVLYQS+K
Sbjct: 726 EEDFKTAWGVQYLF-GKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQK 784
Query: 896 HSQQAIGFSTTNSKIRVDTLS 958
HS QAIGF+TTN IRVD LS
Sbjct: 785 HSSQAIGFATTNPNIRVDALS 805