BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00020604
         (450 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    90   4e-16
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The...    86   7e-15
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...    79   5e-13
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    75   9e-12
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...    75   9e-12
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...    75   1e-11
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...    75   1e-11
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...    75   1e-11
ref|XP_006387518.1| hypothetical protein POPTR_0907s00020g [Popu...    74   2e-11
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                   70   4e-10
ref|XP_006389213.1| hypothetical protein POPTR_0035s003301g, par...    69   7e-10
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    67   2e-09
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    67   3e-09
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu...    65   1e-08
ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    64   2e-08
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...    64   2e-08
ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Popu...    62   6e-08
ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, m...    62   8e-08
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...    61   1e-07
ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theob...    61   2e-07

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 66/156 (42%), Positives = 89/156 (57%), Gaps = 19/156 (12%)
 Frame = -1

Query: 417 RPISLKQESREMWRNVAKHAV--------------CSR--NLMRFSRNSVFQN--KSRDF 292
           RP  LK+ +  MWRN+AK A+               SR  + + FS++ +F    K   F
Sbjct: 30  RPNPLKKPT-VMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGTF 88

Query: 291 DSNKRLITGFYDVGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDR-PKGYASVAEA 115
           + +    +GF ++G R  GE SSRE+  GR SF C +    N   FS   PK YASVAEA
Sbjct: 89  EPSSCSSSGFSEMGFRRIGEISSREDAVGRPSFGCLR----NQMGFSGFCPKSYASVAEA 144

Query: 114 VSSTDTEEDVSSVDEIKGLLEEMCKDEKKGFEFRQQ 7
           VSSTD EEDVS+ DEI+ LL EM K+EK+   F+++
Sbjct: 145 VSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRR 180


>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 1100

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 20/147 (13%)
 Frame = -1

Query: 384 MWRNVAKHAVCSR-----------NLMRFSRNSVFQNKSR-------DFDSNKRLITGFY 259
           MWRN+AKHA+  R           + +  S++S+F  KS+        F SN R    F 
Sbjct: 42  MWRNIAKHAISRRTHSFQCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSR----FL 97

Query: 258 DVGLRGNGEQSSREEDNGRSSFRC--RQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDV 85
           D+G R  GE  +  E  G+ SF     +I CS +      P+GY SVAEAVSSTD EEDV
Sbjct: 98  DMGGRRIGEVLTNVEYIGKQSFGSPRNEIGCSGLC-----PRGYVSVAEAVSSTDVEEDV 152

Query: 84  SSVDEIKGLLEEMCKDEKKGFEFRQQR 4
           S V+EIK LL+EM K++++    R++R
Sbjct: 153 SVVEEIKELLDEMKKEQRRETGNRRRR 179


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
           gi|462411068|gb|EMJ16117.1| hypothetical protein
           PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
 Frame = -1

Query: 393 SREMWRNVAKHAVCSR-----NLMRFSR---------NSVFQNKSRDFDSNKRLITGFYD 256
           S  +WRN AK A+  +     N   FSR          SVF    + F+ +      F +
Sbjct: 33  STTVWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSE 92

Query: 255 VGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSV 76
           VG RG G  SS E+   + SF   + P    + F   PKGYASVAEAVSSTD EE+VS V
Sbjct: 93  VGFRGKGAISSPEDCMCKPSFWSVRNPIW-FNGFC--PKGYASVAEAVSSTDVEEEVSVV 149

Query: 75  DEIKGLLEEMCKDEKKGFEFRQQ 7
           DE++ LL++M  +EK+  +++Q+
Sbjct: 150 DEVQELLQQMSIEEKREAQYKQR 172


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
 Frame = -1

Query: 393 SREMWRNVAKHAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 238
           S  MWRNVAK A+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 237 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 58
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 57  LEEMCKDEKKG 25
           L+EM K+++ G
Sbjct: 158 LQEMKKEQQSG 168


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
           gi|462422319|gb|EMJ26582.1| hypothetical protein
           PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 14/130 (10%)
 Frame = -1

Query: 384 MWRNVAKHAVC--------------SRNLMRFSRNSVFQNKSRDFDSNKRLITGFYDVGL 247
           MWRN+AK                  S   M FS+ S F +K+R F++ K +      +G 
Sbjct: 1   MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 246 RGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEI 67
           R  G+ +S++E+ GR S      P   +S F +  KGYASVAEA++STD EED S  +EI
Sbjct: 61  RQVGDMASQKEELGRCSSLNPSYPYG-ISGFCNYAKGYASVAEAIASTDGEEDSSGSEEI 119

Query: 66  KGLLEEMCKD 37
           + +LE++ ++
Sbjct: 120 QEMLEDLIRE 129


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533046|gb|ESR44229.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
 Frame = -1

Query: 393 SREMWRNVAKHAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 238
           S  MWRNVAK A+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 237 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 58
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 57  LEEMCKDEKK 28
           L+EM K+E++
Sbjct: 158 LQEMKKEEQR 167


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533045|gb|ESR44228.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
 Frame = -1

Query: 393 SREMWRNVAKHAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 238
           S  MWRNVAK A+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 237 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 58
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 57  LEEMCKDEKK 28
           L+EM K+E++
Sbjct: 158 LQEMKKEEQR 167


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533044|gb|ESR44227.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 54/130 (41%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
 Frame = -1

Query: 393 SREMWRNVAKHAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 238
           S  MWRNVAK A+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 237 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 58
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 57  LEEMCKDEKK 28
           L+EM K+E++
Sbjct: 158 LQEMKKEEQR 167


>ref|XP_006387518.1| hypothetical protein POPTR_0907s00020g [Populus trichocarpa]
           gi|550307443|gb|ERP46432.1| hypothetical protein
           POPTR_0907s00020g [Populus trichocarpa]
          Length = 153

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
 Frame = -1

Query: 384 MWRNVAKHAVC-----SRNLMRFSRNSVFQNKSRD---FDSNK--RLITGFYDVGLRGNG 235
           MWRNVAK A       S N   F R   F   S++   F+  K   L      +  R  G
Sbjct: 1   MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLYNTSPRLSFRAIG 60

Query: 234 EQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKG 61
           E S+ E+  G+ SF   R    +N +      P+GY SVAEAVSSTD E+DVS  DE++ 
Sbjct: 61  EISTHEDFMGKPSFIFLRNSDSTNGNRCGGFCPRGYVSVAEAVSSTDVEDDVSGADEVRE 120

Query: 60  LLEEMCKDEKKGFEFRQQRL 1
           LL EM K+E+K   FR++RL
Sbjct: 121 LLPEMRKEEEKEEHFRRRRL 140


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 13/136 (9%)
 Frame = -1

Query: 396 ESREMWRNVAKH---------AVC--SRNLMRFSRNSVFQNKS--RDFDSNKRLITGFYD 256
           +S  MWRN+AK          +VC  SR L+ FS  S+F      R         +GF+D
Sbjct: 36  QSSAMWRNIAKQTISRSPVRLSVCRQSRGLLGFSSESIFPEIFIFRPSVIGPISSSGFHD 95

Query: 255 VGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSV 76
           +G     E  +  + +GR  F   +  C     FS  P+ Y + AEAVSSTD EED S V
Sbjct: 96  MGYSRTCEIPAPGDFSGRPGFGFLKDECC-FHRFS--PRSYVNAAEAVSSTDIEEDASVV 152

Query: 75  DEIKGLLEEMCKDEKK 28
           DE++ LL EM K+EKK
Sbjct: 153 DEVQELLREMKKEEKK 168


>ref|XP_006389213.1| hypothetical protein POPTR_0035s003301g, partial [Populus
           trichocarpa] gi|550311924|gb|ERP48127.1| hypothetical
           protein POPTR_0035s003301g, partial [Populus
           trichocarpa]
          Length = 147

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
 Frame = -1

Query: 384 MWRNVAKHAVC-----SRNLMRFSRNSVFQNKSRD---FDSNK--RLITGFYDVGLRGNG 235
           MWRNVAK A       S +   F R   F   SR+   F+  K   L      +G R   
Sbjct: 1   MWRNVAKQATLKTQSKSLDFPSFPRTYSFLGASREPIFFEKLKFHSLNNTSPRLGFRAID 60

Query: 234 EQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKG 61
           E S+ E+  G+ SF   R I  +N +      P+GY SVAEA+SSTD E++VS  DE++ 
Sbjct: 61  EISTHEDFMGKPSFVFLRNIDSTNGNRCGGFFPRGYVSVAEALSSTDVEDNVSGADEVQE 120

Query: 60  LLEEMCKDEKKGFEFRQQRL 1
           L  EM K+E+K   FR++RL
Sbjct: 121 LQPEMRKEEEKEEHFRRRRL 140


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 56/151 (37%), Positives = 77/151 (50%), Gaps = 20/151 (13%)
 Frame = -1

Query: 399 QESREMWRNVAKH---------AVCSRN----LMRFSRNSVFQNKS--RDFDSNKRLITG 265
           Q S  MWRN+ K           + S+N     + F ++SVF++K   R F       +G
Sbjct: 26  QNSPIMWRNIVKQFSSRTPQKILLTSKNRTYSFLGFGQDSVFKDKRILRSFIPVSCSNSG 85

Query: 264 FYDVGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRP---KGYASVAEAV--SSTD 100
           F ++G +  GE            F  R + C+  S  S+     K YASVAEAV  SSTD
Sbjct: 86  FLEMGFQNLGEFDE---------FLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTD 136

Query: 99  TEEDVSSVDEIKGLLEEMCKDEKKGFEFRQQ 7
            EEDVS V E++ LL E+ K+EKK F FR++
Sbjct: 137 AEEDVSVVGEVQELLTELKKEEKKQFTFRRR 167


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 55/147 (37%), Positives = 77/147 (52%), Gaps = 20/147 (13%)
 Frame = -1

Query: 384 MWRNVAKH---------AVCSRN----LMRFSRNSVFQNKS--RDFDSNKRLITGFYDVG 250
           MWRN+ K           + S+N     + F  +SVF++K   R F       +GF ++G
Sbjct: 31  MWRNIVKQFSTRTPQKILLTSKNHAYSYLGFGLHSVFKDKRTLRSFIPVSCSNSGFLEMG 90

Query: 249 LRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRP---KGYASVAEAV--SSTDTEEDV 85
            +  GE    +E      F  R + C+  S  S+     K YASVAEAV  SSTD EEDV
Sbjct: 91  FQNLGEFLPGDE------FLRRPLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDV 144

Query: 84  SSVDEIKGLLEEMCKDEKKGFEFRQQR 4
           S V E++ LL E+ K+EKK F FR+++
Sbjct: 145 SVVGEVQELLTELKKEEKKQFTFRRRK 171


>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
           gi|550340797|gb|ERP62048.1| hypothetical protein
           POPTR_0004s11060g [Populus trichocarpa]
          Length = 475

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 54/147 (36%), Positives = 77/147 (52%), Gaps = 17/147 (11%)
 Frame = -1

Query: 393 SREMWRNVAKHAVC-----SRNLMRFSRNSVFQNKSRD---FDSNKRLITGFYDVG---- 250
           S  MWRNVAK A+      S N   F R   F    ++   F+ +K     F+ V     
Sbjct: 35  STVMWRNVAKQAILKPQSKSLNFPSFPRTHSFLGAPQEPIFFEKSK-----FHSVNNSSP 89

Query: 249 ---LRGNGEQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDV 85
               R  GE S+ E+  G+ SF   R    SN +  S   P+GY SVAEAVSSTD E++V
Sbjct: 90  QLCFRRIGEISTHEDYMGKPSFGFLRNGDSSNGNLCSGLCPRGYVSVAEAVSSTDVEDNV 149

Query: 84  SSVDEIKGLLEEMCKDEKKGFEFRQQR 4
              +E++ LL++  K+E+K  +FR++R
Sbjct: 150 VVDEELQELLQDTRKEEEKEKDFRRRR 176


>ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like isoform X2 [Cicer
           arietinum]
          Length = 1090

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
 Frame = -1

Query: 393 SREMWRNVAKHAVCSRNLMRFSRNSVFQNKSRDFDSNKRLITGFYDVGLRGNGEQSSREE 214
           S  MWRNV+K A   + L R   +   QN     +++     G+  V        S   E
Sbjct: 36  SSNMWRNVSKQAC--KGLFRSRISPPSQNLIFTVNTDILCHLGYSSVA---EAVSSRDAE 90

Query: 213 DNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEMCKDE 34
           ++G     CR    S  S+F    KGY+SVAEAVSSTD EE+++ VD+I+ LL+EM ++E
Sbjct: 91  EDGNFDGGCR---VSKNSSFRFDAKGYSSVAEAVSSTDAEEELAPVDKIQELLDEMKREE 147

Query: 33  -KKGFEFR 13
            +K  EFR
Sbjct: 148 MRKVAEFR 155


>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
           vinifera]
          Length = 978

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
 Frame = -1

Query: 384 MWRNVAKHAVCSRNLMRFSRNSVFQ-----------NKSRDFDSNKRLITGFYDVGLRGN 238
           MWRN+AKHA  +R L   S++S F            +K+R  +S   + +     GLR  
Sbjct: 1   MWRNLAKHAY-TRRLQLSSQHSSFSPSNCTSRFYFPDKARALESQDHVNSLRPVAGLRRI 59

Query: 237 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 58
           G  S ++++ GR  F   + P +    F  + KGYAS AEA++S   EED+S VDE++ L
Sbjct: 60  GVLSFQQDELGRPGFGVTKTPVNFFGLFGYQ-KGYASAAEAIAS---EEDMSGVDEVQEL 115

Query: 57  LEEMCKDEK 31
           +EE+ K +K
Sbjct: 116 VEEVNKGDK 124


>ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Populus trichocarpa]
           gi|550320354|gb|ERP51329.1| hypothetical protein
           POPTR_0017s14590g [Populus trichocarpa]
          Length = 987

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
 Frame = -1

Query: 384 MWRNVAKHAVC-----SRNLMRFSRNSVFQNKSRD---FDSNK--RLITGFYDVGLRGNG 235
           MWRNVAK A       S N   F R   F   S++   F+  K   L      +  R  G
Sbjct: 1   MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLNNTSPRLSFRAIG 60

Query: 234 EQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKG 61
           E S+ E+  G+  F   R    +N +  +   P+GY SV EAVSSTD E++V   DE++ 
Sbjct: 61  EISTHEDFMGKPRFIFLRNSDSTNGNRCAGFCPRGYVSVVEAVSSTDVEDNVYGADEVQE 120

Query: 60  LLEEMCKDEKKGFEFRQQ 7
           LL EM K+E+K   FR++
Sbjct: 121 LLPEMRKEEEKEEHFRRR 138


>ref|XP_004509767.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
           [Cicer arietinum]
          Length = 1002

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
 Frame = -1

Query: 384 MWRNVAKHAVC------------SRNLMRFSRNSVFQNK---SRDFDSNKRLITGFYDVG 250
           MW N+ K A              S + +RFS++S F  K        +++    GF  V 
Sbjct: 1   MWTNIVKRASSKKFNLSYSISSSSSSSLRFSQHSNFPEKILPQTRIINSRHPFFGFSQVS 60

Query: 249 LRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDE 70
           +  +      E   GRS+    + P +  S      +GY SVAEA+ S+DTE+D S  +E
Sbjct: 61  IFNS------ENKLGRSNLSFSEDPFTFSSTSVAHFRGYGSVAEAIESSDTEDDHSGCEE 114

Query: 69  IKGLLEEMCKDEKKGFEFRQQR 4
           ++ LLEEM K+EKK  E   Q+
Sbjct: 115 VQKLLEEMVKEEKKKPELENQK 136


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 15/142 (10%)
 Frame = -1

Query: 384 MWRNVAKHA---------VCSRN----LMRFSRNSVFQNKSRDFDSNKRLITGFYDVGLR 244
           MWRN+ K             S+N     + F ++SVF++ ++ F S   +      +G +
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISCSNIVMGFQ 93

Query: 243 GNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAV--SSTDTEEDVSSVDE 70
             GE    +E   R   +  Q+   N + F  R K YASVAEAV  SSTD EEDVS VDE
Sbjct: 94  NLGEYLPGDEFLSRPLLK-NQV---NSNDFCCR-KSYASVAEAVAVSSTDAEEDVSVVDE 148

Query: 69  IKGLLEEMCKDEKKGFEFRQQR 4
           ++ LL E+ K+EKK F FR+++
Sbjct: 149 VQELLTELKKEEKKQFAFRRRK 170


>ref|XP_007045723.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
           gi|508709658|gb|EOY01555.1| DNA-directed RNA polymerase
           isoform 3 [Theobroma cacao]
          Length = 932

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
 Frame = -1

Query: 390 REMWRNVAKHAVCSRNLMR---FSRNSVFQNKSRDFDSNKRLITGFYDVGLRGNGEQSSR 220
           RE ++ VA+   CS +      FS++SVF NK R  ++      G    G R  G  SS+
Sbjct: 12  REKFKFVAEPYTCSLSSCSATGFSQDSVFANKVRASEARANGFYGCLFPGFRQIGVFSSQ 71

Query: 219 EEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEMCK 40
           ++D G+ S      P      F +  KGYAS AEAV ST  EED+S  +EI  L+E M +
Sbjct: 72  KDDLGKFSLNQPGDPLRFSGKFWNL-KGYASAAEAVIST--EEDMSGSEEIHELMEAMAR 128

Query: 39  DEKK 28
           +EKK
Sbjct: 129 EEKK 132