BLASTX nr result
ID: Cocculus22_contig00020246
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00020246
(308 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006344527.1| PREDICTED: DNA ligase 4-like isoform X2 [Sol... 97 3e-18
ref|XP_006344526.1| PREDICTED: DNA ligase 4-like isoform X1 [Sol... 97 3e-18
ref|XP_002325262.2| DNA ligase IV family protein [Populus tricho... 96 7e-18
dbj|BAF03051.1| DNA ligase IV [Populus nigra] 94 3e-17
ref|XP_007014429.1| DNA ligase IV [Theobroma cacao] gi|508784792... 90 3e-16
ref|XP_004242917.1| PREDICTED: DNA ligase 4-like [Solanum lycope... 90 4e-16
emb|CBI17913.3| unnamed protein product [Vitis vinifera] 88 1e-15
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera] 88 1e-15
ref|XP_007225204.1| hypothetical protein PRUPE_ppa002057mg [Prun... 87 2e-15
ref|XP_006474277.1| PREDICTED: DNA ligase 4-like isoform X1 [Cit... 85 9e-15
ref|XP_006453240.1| hypothetical protein CICLE_v10007283mg [Citr... 85 9e-15
ref|XP_006453239.1| hypothetical protein CICLE_v10007283mg [Citr... 85 9e-15
ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi... 81 2e-13
ref|XP_004297907.1| PREDICTED: DNA ligase 4-like [Fragaria vesca... 80 2e-13
gb|EXC31206.1| DNA ligase 4 [Morus notabilis] 79 5e-13
ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554... 79 9e-13
ref|XP_004165348.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 4... 75 7e-12
ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus] 75 7e-12
ref|XP_007138770.1| hypothetical protein PHAVU_009G235800g [Phas... 74 2e-11
gb|EYU18211.1| hypothetical protein MIMGU_mgv1a000373mg [Mimulus... 74 3e-11
>ref|XP_006344527.1| PREDICTED: DNA ligase 4-like isoform X2 [Solanum tuberosum]
Length = 1171
Score = 96.7 bits (239), Expect = 3e-18
Identities = 43/80 (53%), Positives = 60/80 (75%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
VE+SV GGK+C+ L HATH+VV+ +P DV + + SF ++E+H L +TKLH+VG +WL
Sbjct: 849 VEISVGGGKVCDNLFHATHVVVMSLPEFDVKFNEVLNSFSEAEKHVLYNTKLHVVGARWL 908
Query: 89 DDYFDKDEKLQEEEYSLKSS 30
+D F +D+KL EE YSLK S
Sbjct: 909 EDSFKEDQKLVEESYSLKPS 928
>ref|XP_006344526.1| PREDICTED: DNA ligase 4-like isoform X1 [Solanum tuberosum]
Length = 1172
Score = 96.7 bits (239), Expect = 3e-18
Identities = 43/80 (53%), Positives = 60/80 (75%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
VE+SV GGK+C+ L HATH+VV+ +P DV + + SF ++E+H L +TKLH+VG +WL
Sbjct: 849 VEISVGGGKVCDNLFHATHVVVMSLPEFDVKFNEVLNSFSEAEKHVLYNTKLHVVGARWL 908
Query: 89 DDYFDKDEKLQEEEYSLKSS 30
+D F +D+KL EE YSLK S
Sbjct: 909 EDSFKEDQKLVEESYSLKPS 928
>ref|XP_002325262.2| DNA ligase IV family protein [Populus trichocarpa]
gi|550318700|gb|EEF03827.2| DNA ligase IV family protein
[Populus trichocarpa]
Length = 1242
Score = 95.5 bits (236), Expect = 7e-18
Identities = 41/86 (47%), Positives = 65/86 (75%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+E+ + GGK+ N + HATHLVVL++P SDVD ++ KSF +E+HFLL+ +L+++G QWL
Sbjct: 842 LEIFMGGGKVSNNIAHATHLVVLIVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQWL 901
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSD 12
+D ++ +KL E+ Y+LK S L+ S+
Sbjct: 902 EDSLERGQKLLEDTYNLKPSGLEESN 927
>dbj|BAF03051.1| DNA ligase IV [Populus nigra]
Length = 1319
Score = 93.6 bits (231), Expect = 3e-17
Identities = 41/86 (47%), Positives = 64/86 (74%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+E+ + GGK+ N + HATHLVVL +P SDVD ++ KSF +E+HFLL+ +L+++G QWL
Sbjct: 842 LEIFMGGGKVSNNIAHATHLVVLNVPASDVDFGSLVKSFTTAEKHFLLNKRLYVIGSQWL 901
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSD 12
+D ++ +KL E+ Y+LK S L+ S+
Sbjct: 902 EDSLERGQKLLEDTYNLKPSGLEESN 927
>ref|XP_007014429.1| DNA ligase IV [Theobroma cacao] gi|508784792|gb|EOY32048.1| DNA
ligase IV [Theobroma cacao]
Length = 1195
Score = 90.1 bits (222), Expect = 3e-16
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EV + GGKI L HATHLV+L +PG DVD D++ KSF +E+H LH+VG QWL
Sbjct: 833 LEVLMGGGKISKDLKHATHLVILSVPGLDVDFDSLIKSFSCAEKHLFWKKGLHVVGSQWL 892
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSDM 9
+D ++ +KLQE+ YSLK S ++ +++
Sbjct: 893 EDCLERGQKLQEDLYSLKLSEVEETNL 919
>ref|XP_004242917.1| PREDICTED: DNA ligase 4-like [Solanum lycopersicum]
Length = 1172
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/80 (51%), Positives = 58/80 (72%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
VE+SV GGK+ + L HATH+VV+ +P DV + + SF ++E+H L +TKLH+VG +WL
Sbjct: 849 VEISVGGGKVGDNLFHATHVVVMSLPEIDVKFNEVLNSFSEAEKHVLYNTKLHVVGARWL 908
Query: 89 DDYFDKDEKLQEEEYSLKSS 30
+D +D+KL EE YSLK S
Sbjct: 909 EDSLKEDQKLLEESYSLKPS 928
>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
Length = 1163
Score = 88.2 bits (217), Expect = 1e-15
Identities = 41/86 (47%), Positives = 60/86 (69%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EVS+ GGK+ N L ATHLVV +PG D+D I +SF +E+H L + KLH+VG+QWL
Sbjct: 834 LEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWL 893
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSD 12
+ ++ +LQE++YSLK L+ S+
Sbjct: 894 EGCLEEGRRLQEQKYSLKPEGLEESN 919
>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
Length = 1162
Score = 88.2 bits (217), Expect = 1e-15
Identities = 41/86 (47%), Positives = 60/86 (69%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EVS+ GGK+ N L ATHLVV +PG D+D I +SF +E+H L + KLH+VG+QWL
Sbjct: 833 LEVSMGGGKVGNNLSQATHLVVFSVPGFDLDFSDIMESFSPAEKHLLCNKKLHVVGYQWL 892
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSD 12
+ ++ +LQE++YSLK L+ S+
Sbjct: 893 EGCLEEGRRLQEQKYSLKPEGLEESN 918
>ref|XP_007225204.1| hypothetical protein PRUPE_ppa002057mg [Prunus persica]
gi|462422140|gb|EMJ26403.1| hypothetical protein
PRUPE_ppa002057mg [Prunus persica]
Length = 723
Score = 87.4 bits (215), Expect = 2e-15
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
++V + G++ + + HATHLVVL + G DVD + +SF +SE+ FL + KLHIVG QWL
Sbjct: 435 IQVLISAGRVTDSIAHATHLVVLSVQGLDVDSGTLLQSFTESEKRFLHNKKLHIVGSQWL 494
Query: 89 DDYFDKDEKLQEEEYSLK 36
+D ++D++LQEE YSLK
Sbjct: 495 EDCLERDQRLQEETYSLK 512
>ref|XP_006474277.1| PREDICTED: DNA ligase 4-like isoform X1 [Citrus sinensis]
gi|568840649|ref|XP_006474278.1| PREDICTED: DNA ligase
4-like isoform X2 [Citrus sinensis]
Length = 1174
Score = 85.1 bits (209), Expect = 9e-15
Identities = 40/89 (44%), Positives = 61/89 (68%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+E+S GGK+CN L +ATH+VVL + G DV+ +++ +SF E+H L + KLH+V QWL
Sbjct: 849 LEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWL 908
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSDMAL 3
+D K++K +E EYSLK + + S + L
Sbjct: 909 EDCLAKEQKSEEYEYSLKPTGMQESYLEL 937
>ref|XP_006453240.1| hypothetical protein CICLE_v10007283mg [Citrus clementina]
gi|568840651|ref|XP_006474279.1| PREDICTED: DNA ligase
4-like isoform X3 [Citrus sinensis]
gi|557556466|gb|ESR66480.1| hypothetical protein
CICLE_v10007283mg [Citrus clementina]
Length = 1159
Score = 85.1 bits (209), Expect = 9e-15
Identities = 40/89 (44%), Positives = 61/89 (68%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+E+S GGK+CN L +ATH+VVL + G DV+ +++ +SF E+H L + KLH+V QWL
Sbjct: 834 LEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWL 893
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSDMAL 3
+D K++K +E EYSLK + + S + L
Sbjct: 894 EDCLAKEQKSEEYEYSLKPTGMQESYLEL 922
>ref|XP_006453239.1| hypothetical protein CICLE_v10007283mg [Citrus clementina]
gi|557556465|gb|ESR66479.1| hypothetical protein
CICLE_v10007283mg [Citrus clementina]
Length = 824
Score = 85.1 bits (209), Expect = 9e-15
Identities = 40/89 (44%), Positives = 61/89 (68%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+E+S GGK+CN L +ATH+VVL + G DV+ +++ +SF E+H L + KLH+V QWL
Sbjct: 499 LEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSQWL 558
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSDMAL 3
+D K++K +E EYSLK + + S + L
Sbjct: 559 EDCLAKEQKSEEYEYSLKPTGMQESYLEL 587
>ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi|297312022|gb|EFH42446.1|
ATLIG4 [Arabidopsis lyrata subsp. lyrata]
Length = 1221
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/86 (41%), Positives = 57/86 (66%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EV + GGK+ N L HA+HLVVL M +D ++ KSF + E+ LL +LH+V +WL
Sbjct: 835 LEVLMGGGKVSNNLAHASHLVVLTMAEKSLDFASVSKSFSEMEKRLLLKKRLHVVSSRWL 894
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSD 12
+D ++EKL E+ Y+L+ +++ SD
Sbjct: 895 EDSLQREEKLCEDVYNLRPKYMEESD 920
>ref|XP_004297907.1| PREDICTED: DNA ligase 4-like [Fragaria vesca subsp. vesca]
Length = 1188
Score = 80.5 bits (197), Expect = 2e-13
Identities = 36/78 (46%), Positives = 56/78 (71%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EV + GG++ + L ATHLV+L + G DV + + +S ++E+HFL + +LH+VG QWL
Sbjct: 838 IEVLMGGGRVSDNLADATHLVLLSIQGCDVGFETLSQSLTEAEKHFLHNKRLHVVGLQWL 897
Query: 89 DDYFDKDEKLQEEEYSLK 36
+D +K ++LQEE YSLK
Sbjct: 898 EDCLEKKQRLQEESYSLK 915
>gb|EXC31206.1| DNA ligase 4 [Morus notabilis]
Length = 821
Score = 79.3 bits (194), Expect = 5e-13
Identities = 36/78 (46%), Positives = 56/78 (71%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
VEV++ GG++ N L ATHLVVL +PG +D++ + +SF +E+ + + KLHIV QWL
Sbjct: 432 VEVNMNGGRVSNSLAQATHLVVLSVPGFTLDLENVLQSFSGTEKRLIWNGKLHIVQSQWL 491
Query: 89 DDYFDKDEKLQEEEYSLK 36
+D +++++L EE YSLK
Sbjct: 492 EDCVEREQRLPEETYSLK 509
>ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana]
gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA
ligase 4; AltName: Full=DNA ligase IV; AltName:
Full=Polydeoxyribonucleotide synthase [ATP] 4
gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV
[Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA
ligase 4 [Arabidopsis thaliana]
Length = 1219
Score = 78.6 bits (192), Expect = 9e-13
Identities = 35/86 (40%), Positives = 55/86 (63%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EV + GGK+ N L HA+HLVVL M +D + KSF + E+ LL +LH+V WL
Sbjct: 833 LEVLMAGGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWL 892
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRSD 12
++ ++EKL E+ Y+L+ +++ SD
Sbjct: 893 EESLQREEKLCEDVYTLRPKYMEESD 918
>ref|XP_004165348.1| PREDICTED: LOW QUALITY PROTEIN: DNA ligase 4-like, partial [Cucumis
sativus]
Length = 918
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
VEVS GGK+ + + ATH++V +PG+ V + + KS ++E+H +L K+HI+ HQWL
Sbjct: 536 VEVSFRGGKVSDDPVSATHIIVFEIPGAPVRYETVLKSCNEAEKHAMLKDKIHIIAHQWL 595
Query: 89 DDYFDKDEKLQEEEYSL 39
+D + ++LQE+ Y+L
Sbjct: 596 EDCLEMAQRLQEDSYNL 612
>ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]
Length = 1214
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
VEVS GGK+ + + ATH++V +PG+ V + + KS ++E+H +L K+HI+ HQWL
Sbjct: 832 VEVSFRGGKVSDDPVSATHIIVFEIPGAPVRYETVLKSCNEAEKHAMLKDKIHIIAHQWL 891
Query: 89 DDYFDKDEKLQEEEYSL 39
+D + ++LQE+ Y+L
Sbjct: 892 EDCLEMAQRLQEDSYNL 908
>ref|XP_007138770.1| hypothetical protein PHAVU_009G235800g [Phaseolus vulgaris]
gi|561011857|gb|ESW10764.1| hypothetical protein
PHAVU_009G235800g [Phaseolus vulgaris]
Length = 1172
Score = 74.3 bits (181), Expect = 2e-11
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+EV + GGK+ + L ATHLV L+PG D + I SF +ER L S +LH+V QWL
Sbjct: 834 LEVLMGGGKVTSNLTCATHLVAFLVPGCRTDSEQILNSFTSAERKILQSKRLHVVKSQWL 893
Query: 89 DDYFDKDEKLQEEEYSLKSSFLDRS 15
+D D ++L E+ YSLK ++ S
Sbjct: 894 EDCSDSSKRLPEDSYSLKPWGIEES 918
>gb|EYU18211.1| hypothetical protein MIMGU_mgv1a000373mg [Mimulus guttatus]
Length = 1207
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = -1
Query: 269 VEVSVFGGKICNKLLHATHLVVLLMPGSDVDVDAIFKSFPKSERHFLLSTKLHIVGHQWL 90
+E+ + GG + + HATHLV++ DVD D + KS + E+ L L IV QWL
Sbjct: 835 IEICMGGGYVAETIAHATHLVIVCSTQIDVDFDTLLKSLSELEKRLLHRRSLQIVKSQWL 894
Query: 89 DDYFDKDEKLQEEEYSLK 36
DD F+KD++L E+ YSLK
Sbjct: 895 DDCFEKDQRLPEDSYSLK 912