BLASTX nr result
ID: Cocculus22_contig00020204
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00020204
(600 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006837385.1| hypothetical protein AMTR_s00111p00127690 [A... 112 1e-22
dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare] 98 2e-18
emb|CBI19898.3| unnamed protein product [Vitis vinifera] 97 3e-18
gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Ory... 96 1e-17
gb|EAZ28342.1| hypothetical protein OsJ_12319 [Oryza sativa Japo... 96 1e-17
ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I sub... 90 4e-16
ref|XP_004982002.1| PREDICTED: DNA-directed RNA polymerase I sub... 90 6e-16
ref|XP_006416439.1| hypothetical protein EUTSA_v10009132mg [Eutr... 88 2e-15
ref|NP_001051059.2| Os03g0711700 [Oryza sativa Japonica Group] g... 86 6e-15
ref|XP_006650488.1| PREDICTED: DNA-directed RNA polymerase I sub... 86 8e-15
ref|XP_006390663.1| hypothetical protein EUTSA_v10019327mg [Eutr... 86 8e-15
ref|XP_002875292.1| transcription factor S-II domain-containing ... 86 8e-15
ref|NP_566786.1| TFIIB zinc-binding protein [Arabidopsis thalian... 84 4e-14
ref|XP_004512027.1| PREDICTED: DNA-directed RNA polymerase I sub... 83 7e-14
ref|XP_004501608.1| PREDICTED: DNA-directed RNA polymerase I sub... 83 7e-14
ref|XP_006292047.1| hypothetical protein CARUB_v10018251mg [Caps... 83 7e-14
ref|XP_003603103.1| DNA-directed RNA polymerase I subunit RPA12 ... 83 7e-14
ref|XP_007017850.1| TFIIB zinc-binding protein, putative [Theobr... 81 3e-13
ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlam... 81 3e-13
ref|XP_006435209.1| hypothetical protein CICLE_v10003775mg [Citr... 80 3e-13
>ref|XP_006837385.1| hypothetical protein AMTR_s00111p00127690 [Amborella trichopoda]
gi|548840003|gb|ERN00239.1| hypothetical protein
AMTR_s00111p00127690 [Amborella trichopoda]
Length = 102
Score = 112 bits (279), Expect = 1e-22
Identities = 48/81 (59%), Positives = 62/81 (76%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
ICYTITAED+RR+L + PFV+LD +DK ++R N+ CPKC +P LEY ++Q+RSA
Sbjct: 22 ICYTITAEDLRRDLNLEPFVQLDKDTREEDKGVQRTVVNEPCPKCLNPQLEYHTKQLRSA 81
Query: 181 DEGQTIFYSCPRCGHKFLQNT 243
DEGQT+FY CP+C HKF NT
Sbjct: 82 DEGQTVFYDCPKCRHKFSVNT 102
>dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 125
Score = 97.8 bits (242), Expect = 2e-18
Identities = 46/79 (58%), Positives = 57/79 (72%)
Frame = +1
Query: 7 YTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSADE 186
Y +TAEDIRREL I PFV L+ D ++R+ ++CPKCNH LEY ++Q+RSADE
Sbjct: 48 YAVTAEDIRRELKIKPFVVLESA-PNLDIVVQRSLTERACPKCNHHELEYYTKQLRSADE 106
Query: 187 GQTIFYSCPRCGHKFLQNT 243
GQTIFY CP CGH F +NT
Sbjct: 107 GQTIFYECPECGHAFNENT 125
>emb|CBI19898.3| unnamed protein product [Vitis vinifera]
Length = 126
Score = 97.1 bits (240), Expect = 3e-18
Identities = 46/82 (56%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHP-WLEYTSRQMRS 177
I YT++AEDIRREL I PFVKLDG + ++ + + A+ C +C WL Y +RQ+RS
Sbjct: 46 IRYTVSAEDIRRELNIEPFVKLDGIIT-EESEAQNAKTKGRCDRCEEDTWLYYYTRQLRS 104
Query: 178 ADEGQTIFYSCPRCGHKFLQNT 243
ADEGQTIFY C +CGHK+ QNT
Sbjct: 105 ADEGQTIFYECTKCGHKWSQNT 126
>gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa Japonica Group]
gi|108710721|gb|ABF98516.1| Transcription factor S-II
family protein, expressed [Oryza sativa Japonica Group]
Length = 126
Score = 95.5 bits (236), Expect = 1e-17
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = +1
Query: 7 YTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSADE 186
YT+TAEDIRREL + P+V L+ L +D +ERA N+ C KC +P L+Y ++Q+RSADE
Sbjct: 48 YTVTAEDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADE 107
Query: 187 GQTIFYSCPRCGHKFLQN 240
GQT+FY C C H+F +N
Sbjct: 108 GQTVFYKCANCRHEFNEN 125
>gb|EAZ28342.1| hypothetical protein OsJ_12319 [Oryza sativa Japonica Group]
gi|218193626|gb|EEC76053.1| hypothetical protein
OsI_13248 [Oryza sativa Indica Group]
Length = 156
Score = 95.5 bits (236), Expect = 1e-17
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = +1
Query: 7 YTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSADE 186
YT+TAEDIRREL + P+V L+ L +D +ERA N+ C KC +P L+Y ++Q+RSADE
Sbjct: 78 YTVTAEDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADE 137
Query: 187 GQTIFYSCPRCGHKFLQN 240
GQT+FY C C H+F +N
Sbjct: 138 GQTVFYKCANCRHEFNEN 155
>ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Brachypodium distachyon]
Length = 125
Score = 90.1 bits (222), Expect = 4e-16
Identities = 41/78 (52%), Positives = 53/78 (67%)
Frame = +1
Query: 7 YTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSADE 186
Y +T EDIRREL I PFV L+ D ++R +++CPKC HP LEY ++Q+R+ADE
Sbjct: 48 YAVTDEDIRRELKIEPFVTLESA-PKMDVIVQRVVVDETCPKCGHPQLEYHTKQLRAADE 106
Query: 187 GQTIFYSCPRCGHKFLQN 240
GQT+FY CP C H F N
Sbjct: 107 GQTVFYECPECRHNFKVN 124
>ref|XP_004982002.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Setaria italica]
Length = 123
Score = 89.7 bits (221), Expect = 6e-16
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Frame = +1
Query: 7 YTITAEDIRRELGIAPFVKLDG-PLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSAD 183
YT+TAEDIRREL I PFV L+ P+ + + R + + CP+CNHP EY SRQMRSAD
Sbjct: 48 YTVTAEDIRRELKIEPFVTLESAPM--QEVVVRRPKTRRPCPECNHPIAEYYSRQMRSAD 105
Query: 184 EGQTIFYSCPRCGHKF 231
EG+T FY C +C H F
Sbjct: 106 EGETTFYECMKCHHTF 121
>ref|XP_006416439.1| hypothetical protein EUTSA_v10009132mg [Eutrema salsugineum]
gi|312281609|dbj|BAJ33670.1| unnamed protein product
[Thellungiella halophila] gi|557094210|gb|ESQ34792.1|
hypothetical protein EUTSA_v10009132mg [Eutrema
salsugineum]
Length = 119
Score = 88.2 bits (217), Expect = 2e-15
Identities = 41/79 (51%), Positives = 54/79 (68%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YT++AEDIRRELGI+ F + +D E + ++C KC HP L YT+RQ RSA
Sbjct: 46 IAYTVSAEDIRRELGISLFGEKT------QEDAELPKIKKACEKCQHPELVYTTRQTRSA 99
Query: 181 DEGQTIFYSCPRCGHKFLQ 237
DEGQT +Y+CP CGH+F +
Sbjct: 100 DEGQTTYYTCPNCGHRFTE 118
>ref|NP_001051059.2| Os03g0711700 [Oryza sativa Japonica Group]
gi|255674831|dbj|BAF12973.2| Os03g0711700 [Oryza sativa
Japonica Group]
Length = 154
Score = 86.3 bits (212), Expect = 6e-15
Identities = 37/76 (48%), Positives = 54/76 (71%)
Frame = +1
Query: 13 ITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSADEGQ 192
++ +DIRREL + P+V L+ L +D +ERA N+ C KC +P L+Y ++Q+RSADEGQ
Sbjct: 78 VSPQDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQ 137
Query: 193 TIFYSCPRCGHKFLQN 240
T+FY C C H+F +N
Sbjct: 138 TVFYKCANCRHEFNEN 153
>ref|XP_006650488.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Oryza
brachyantha]
Length = 125
Score = 85.9 bits (211), Expect = 8e-15
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +1
Query: 7 YTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSADE 186
Y +T EDIRR+L + PFV L+ L D+ ++RA N+ CP+C + LEY ++Q+RSADE
Sbjct: 48 YAVTGEDIRRDLKLDPFVVLESTLK-DETAVKRATINRLCPECGYHELEYYTKQLRSADE 106
Query: 187 GQTIFYSCPRCGHKFLQN 240
GQT+F+ C C HKF +N
Sbjct: 107 GQTVFFECRDCRHKFNEN 124
>ref|XP_006390663.1| hypothetical protein EUTSA_v10019327mg [Eutrema salsugineum]
gi|557087097|gb|ESQ27949.1| hypothetical protein
EUTSA_v10019327mg [Eutrema salsugineum]
Length = 119
Score = 85.9 bits (211), Expect = 8e-15
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YT++AEDIRRELGI+ F + +D E + ++C KC HP L YT+RQ RSA
Sbjct: 46 IAYTVSAEDIRRELGISLFGEKT------QEDAELPKIKKACEKCQHPELVYTTRQTRSA 99
Query: 181 DEGQTIFYSCPRCGHKFLQ 237
DEGQT +Y+CP C H+F +
Sbjct: 100 DEGQTTYYTCPNCSHRFTE 118
>ref|XP_002875292.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata] gi|297321130|gb|EFH51551.1|
transcription factor S-II domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 119
Score = 85.9 bits (211), Expect = 8e-15
Identities = 40/79 (50%), Positives = 53/79 (67%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YT+TAEDIRRELGI+ F + ++ E + ++C KC HP L YT+RQ RSA
Sbjct: 46 IAYTVTAEDIRRELGISLFGEKT------QEEAELPKIKKACEKCQHPELVYTTRQTRSA 99
Query: 181 DEGQTIFYSCPRCGHKFLQ 237
DEGQT +Y+CP C H+F +
Sbjct: 100 DEGQTTYYTCPNCAHRFTE 118
>ref|NP_566786.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
gi|9279599|dbj|BAB01057.1| unnamed protein product
[Arabidopsis thaliana] gi|21536551|gb|AAM60883.1|
putative RNA polymerase I subunit [Arabidopsis thaliana]
gi|88011125|gb|ABD38906.1| At3g25940 [Arabidopsis
thaliana] gi|332643572|gb|AEE77093.1| TFIIB zinc-binding
protein [Arabidopsis thaliana]
Length = 119
Score = 83.6 bits (205), Expect = 4e-14
Identities = 39/79 (49%), Positives = 52/79 (65%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YT++AEDIRRELGI+ F + + E + ++C KC HP L YT+RQ RSA
Sbjct: 46 IAYTVSAEDIRRELGISLFGEKT------QAEAELPKIKKACEKCQHPELVYTTRQTRSA 99
Query: 181 DEGQTIFYSCPRCGHKFLQ 237
DEGQT +Y+CP C H+F +
Sbjct: 100 DEGQTTYYTCPNCAHRFTE 118
>ref|XP_004512027.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cicer
arietinum]
Length = 116
Score = 82.8 bits (203), Expect = 7e-14
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YTI+AEDIRRELGI +++ ++ ++ N++C KC H + +RQMRSA
Sbjct: 46 ISYTISAEDIRRELGIDLI---------EEQKVQLSKVNKTCEKCGHGEATFYTRQMRSA 96
Query: 181 DEGQTIFYSCPRCGHKFLQN 240
DEGQT FY+C RCGH+F +N
Sbjct: 97 DEGQTTFYTCTRCGHQFQEN 116
>ref|XP_004501608.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
X1 [Cicer arietinum] gi|502132990|ref|XP_004501609.1|
PREDICTED: DNA-directed RNA polymerase I subunit
RPA12-like isoform X2 [Cicer arietinum]
gi|502132992|ref|XP_004501610.1| PREDICTED: DNA-directed
RNA polymerase I subunit RPA12-like isoform X3 [Cicer
arietinum]
Length = 116
Score = 82.8 bits (203), Expect = 7e-14
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YTI+AEDIRRELGI +++ ++ ++ N++C KC H + +RQMRSA
Sbjct: 46 ISYTISAEDIRRELGIDLI---------EEQKVQLSKVNKTCEKCGHGEATFYTRQMRSA 96
Query: 181 DEGQTIFYSCPRCGHKFLQN 240
DEGQT FY+C RCGH+F +N
Sbjct: 97 DEGQTTFYTCTRCGHQFQEN 116
>ref|XP_006292047.1| hypothetical protein CARUB_v10018251mg [Capsella rubella]
gi|482560754|gb|EOA24945.1| hypothetical protein
CARUB_v10018251mg [Capsella rubella]
Length = 119
Score = 82.8 bits (203), Expect = 7e-14
Identities = 39/79 (49%), Positives = 54/79 (68%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I Y ++AEDIRRELGI+ F G +D+ + + + ++C KC HP L YT+RQ RSA
Sbjct: 46 IAYKVSAEDIRRELGISLF----GEKQQEDEQLPKIK--KACEKCQHPELVYTTRQTRSA 99
Query: 181 DEGQTIFYSCPRCGHKFLQ 237
DEGQT +Y+CP C H+F +
Sbjct: 100 DEGQTTYYTCPNCAHRFTE 118
>ref|XP_003603103.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|357470681|ref|XP_003605625.1| DNA-directed RNA
polymerase I subunit RPA12 [Medicago truncatula]
gi|355492151|gb|AES73354.1| DNA-directed RNA polymerase
I subunit RPA12 [Medicago truncatula]
gi|355506680|gb|AES87822.1| DNA-directed RNA polymerase
I subunit RPA12 [Medicago truncatula]
Length = 115
Score = 82.8 bits (203), Expect = 7e-14
Identities = 39/80 (48%), Positives = 54/80 (67%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YTI+AEDIRRELGI +++ ++ ++ N++C KC H + +RQMRSA
Sbjct: 45 ISYTISAEDIRRELGIDLI---------EEQKVQLSKVNKTCEKCGHGEAAFYTRQMRSA 95
Query: 181 DEGQTIFYSCPRCGHKFLQN 240
DEGQT FY+C RCGH+F +N
Sbjct: 96 DEGQTTFYTCTRCGHQFQEN 115
>ref|XP_007017850.1| TFIIB zinc-binding protein, putative [Theobroma cacao]
gi|508723178|gb|EOY15075.1| TFIIB zinc-binding protein,
putative [Theobroma cacao]
Length = 119
Score = 80.9 bits (198), Expect = 3e-13
Identities = 43/80 (53%), Positives = 50/80 (62%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I YTITAEDIRR+LGI+ + G A Q+C KC HP LEYT+RQMRSA
Sbjct: 46 IGYTITAEDIRRDLGISHVSE------GMKTKESAALIKQTCKKCGHPELEYTTRQMRSA 99
Query: 181 DEGQTIFYSCPRCGHKFLQN 240
DEGQT+F CP C K +N
Sbjct: 100 DEGQTVFLVCPNCKFKDTEN 119
>ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
gi|158283921|gb|EDP09671.1| DNA-directed RNA polymerase
I subunit [Chlamydomonas reinhardtii]
Length = 124
Score = 80.9 bits (198), Expect = 3e-13
Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
Frame = +1
Query: 22 EDIRRELGIAPFVKLDGPLAGDDKDI----ERARANQSCPKCNHPWLEYTSRQMRSADEG 189
ED RR + P VK + +D+++ +RA ++ CPKCNH LEY + Q+RSADEG
Sbjct: 52 EDYRRRFALEPLVK-----SVEDEELLKGRKRATVDEPCPKCNHRQLEYYTMQLRSADEG 106
Query: 190 QTIFYSCPRCGHKFLQNT 243
QT+FY C CGHK+ QNT
Sbjct: 107 QTVFYECKNCGHKYSQNT 124
>ref|XP_006435209.1| hypothetical protein CICLE_v10003775mg [Citrus clementina]
gi|557537331|gb|ESR48449.1| hypothetical protein
CICLE_v10003775mg [Citrus clementina]
Length = 120
Score = 80.5 bits (197), Expect = 3e-13
Identities = 36/76 (47%), Positives = 53/76 (69%)
Frame = +1
Query: 1 ICYTITAEDIRRELGIAPFVKLDGPLAGDDKDIERARANQSCPKCNHPWLEYTSRQMRSA 180
I Y +TAE+I+RELGI+ F + G D + + ++ ++C KC +P + Y++RQ RSA
Sbjct: 45 ISYAVTAEEIKRELGISLFEQPQG----DKGETQLSKVKRACEKCQNPEMYYSTRQTRSA 100
Query: 181 DEGQTIFYSCPRCGHK 228
DEGQT +Y CPRCGH+
Sbjct: 101 DEGQTTYYICPRCGHR 116