BLASTX nr result
ID: Cocculus22_contig00019295
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00019295
(299 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis] 100 2e-19
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th... 97 2e-18
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis... 96 7e-18
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 92 8e-17
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum] 92 8e-17
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 88 1e-15
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum] 87 2e-15
gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana] 86 4e-15
gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana... 86 7e-15
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus... 85 9e-15
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li... 84 2e-14
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali... 84 2e-14
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha... 84 2e-14
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall... 84 2e-14
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa... 84 3e-14
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 83 4e-14
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ... 83 4e-14
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper... 83 4e-14
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps... 82 6e-14
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A... 81 1e-13
>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
Length = 1133
Score = 100 bits (249), Expect = 2e-19
Identities = 54/92 (58%), Positives = 66/92 (71%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQ+SGFPS VSAE VKEFLE + G+GTVYA+KIRP K G R++A+VQF T ++
Sbjct: 1 MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGG--SRSYAIVQFMTVET 58
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A+LI L N L YG S L M DIVP+P
Sbjct: 59 AELIIRLANPRLWYGRSYLLARVMERDIVPKP 90
>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
polymerase 1 isoform 1 [Theobroma cacao]
gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
1 isoform 1 [Theobroma cacao]
Length = 1109
Score = 97.4 bits (241), Expect = 2e-18
Identities = 56/92 (60%), Positives = 64/92 (69%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQVS FPS+V AE VK FLE Y GK TVYALKIR K G RA+A+VQFT +
Sbjct: 1 MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG---RAYAIVQFTKSTD 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A+LI L N+ L YG S LK M NDIVP+P
Sbjct: 58 AELIIRLTNQRLYYGSSYLKAREMENDIVPKP 89
>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
1a [Cucumis sativus]
Length = 1130
Score = 95.5 bits (236), Expect = 7e-18
Identities = 51/92 (55%), Positives = 64/92 (69%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TI +SGFPS V+A+ VK FLE + G GTVYA+K+RP K G R +A+VQFT+A
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTSATQ 58
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A+LI L N+ L YG S LK A DIVP+P
Sbjct: 59 AELIISLANQRLWYGSSYLKARATEVDIVPKP 90
>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 92.0 bits (227), Expect = 8e-17
Identities = 54/92 (58%), Positives = 60/92 (65%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GF S VSA VK FLE Y G+ TVYALKIR K G RAFA+VQFT +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A LI L N+ L YG S LK M DIVP+P
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKP 89
>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 92.0 bits (227), Expect = 8e-17
Identities = 54/92 (58%), Positives = 60/92 (65%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GF S VSA VK FLE Y G+ TVYALKIR K G RAFA+VQFT +
Sbjct: 1 MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG---RAFAIVQFTRSSD 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A LI L N+ L YG S LK M DIVP+P
Sbjct: 58 AGLIIRLANQRLYYGRSYLKAREMETDIVPKP 89
>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
max] gi|571439308|ref|XP_006574822.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
max] gi|571439310|ref|XP_006574823.1| PREDICTED:
RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
max]
Length = 1125
Score = 88.2 bits (217), Expect = 1e-15
Identities = 50/95 (52%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TI++ GFP+SV+ VK F+E Y G+GTV+A+K+R KG RAFA++QFTTA+S
Sbjct: 1 MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLR--HGKGRVPRAFAIIQFTTANS 58
Query: 203 ADLITLLIN---RHLRYGISNLKVWAMGNDIVPRP 298
A + N R LRYG S LK M DIVPRP
Sbjct: 59 ATSMMSRANNILRTLRYGTSYLKAREMERDIVPRP 93
>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 87.0 bits (214), Expect = 2e-15
Identities = 49/89 (55%), Positives = 59/89 (66%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP +SAE VK+FLEN+ G GTVYAL+++ K RRAFA VQF S
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKG---GRRAFAKVQFANNKS 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIV 289
A+ I L ++ L YG S LK W M DIV
Sbjct: 58 AEFIIDLASKGLYYGPSYLKAWEMKTDIV 86
>gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 86.3 bits (212), Expect = 4e-15
Identities = 49/89 (55%), Positives = 59/89 (66%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP +SAE VK FLEN+ G GTVYAL+++ K RR+FA VQF + S
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKG---GRRSFARVQFASNKS 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIV 289
A+LI L + L YG S LK W M DIV
Sbjct: 58 AELIIDLASMGLYYGPSYLKAWEMNTDIV 86
>gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 85.5 bits (210), Expect = 7e-15
Identities = 49/89 (55%), Positives = 58/89 (65%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP +SAE VK FLEN+ G GTVYAL+++ K RRAFA VQF S
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKG---GRRAFAKVQFANNKS 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIV 289
A+LI L + L YG S L+ W M DIV
Sbjct: 58 AELIMDLASEGLYYGPSYLQAWEMKTDIV 86
>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
Length = 1110
Score = 85.1 bits (209), Expect = 9e-15
Identities = 49/92 (53%), Positives = 59/92 (64%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MGRTIQV GFP V+AE+VK+FLENY G+GTV AL+++ KV RRA+A VQFT
Sbjct: 1 MGRTIQVFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKV---GRRAYARVQFTNIRC 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A+ I L L YG S LK + DIV P
Sbjct: 58 AETIIDLAKNRLYYGTSYLKAYESDIDIVQNP 89
>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
Length = 1132
Score = 84.3 bits (207), Expect = 2e-14
Identities = 52/94 (55%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP+ V+AE VK+FLE+ G GTVYALK+R K KG+ R +A+VQFTT ++
Sbjct: 1 MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPK-KGV-GRLYAIVQFTTKEA 58
Query: 203 ADLITLLINR--HLRYGISNLKVWAMGNDIVPRP 298
AD I L R L YG S L M D VPRP
Sbjct: 59 ADTIISLACRTEKLWYGRSYLNARRMEQDTVPRP 92
>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 84.3 bits (207), Expect = 2e-14
Identities = 47/92 (51%), Positives = 58/92 (63%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R +A+VQFT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
LI L YG S LK + + DIVP+P
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKP 90
>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
[Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
putative RNA-directed RNA polymerase [Arabidopsis
thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 84.3 bits (207), Expect = 2e-14
Identities = 47/92 (51%), Positives = 58/92 (63%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R +A+VQFT+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERH 58
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
LI L YG S LK + + DIVP+P
Sbjct: 59 TRLIITAAAERLYYGRSYLKAFEVEQDIVPKP 90
>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 84.0 bits (206), Expect = 2e-14
Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R FA+VQFT
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERY 58
Query: 203 A-DLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A +IT R L YG S L + + DIVP+P
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVDQDIVPKP 91
>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
[Nicotiana glutinosa]
Length = 1117
Score = 83.6 bits (205), Expect = 3e-14
Identities = 48/89 (53%), Positives = 58/89 (65%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP +SAE VK FLEN+ G GTVYAL+++ K RRAFA VQF S
Sbjct: 1 MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKG---GRRAFAKVQFANNKS 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIV 289
A++I L ++ L YG S LK W M IV
Sbjct: 58 AEIIIDLASKGLYYGPSYLKAWEMKTYIV 86
>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 83.2 bits (204), Expect = 4e-14
Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R FA+VQFT
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNEIY 58
Query: 203 A-DLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A +IT R L YG S L + + DIVP+P
Sbjct: 59 ARQIITGAAERRLYYGRSYLNAFEVEQDIVPKP 91
>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 83.2 bits (204), Expect = 4e-14
Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP+ VSAE VK+FLE G GTVYA+K+R K G R FA+VQFT
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERY 58
Query: 203 A-DLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A +IT R L YG S L + + DIVP+P
Sbjct: 59 ARQIITGAAERSLYYGRSYLNAFEVEQDIVPKP 91
>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
[Solanum lycopersicum]
Length = 1114
Score = 83.2 bits (204), Expect = 4e-14
Identities = 49/89 (55%), Positives = 55/89 (61%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP +SAEVVK FLE Y G GTV AL+++ K RAFA VQF S
Sbjct: 1 MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGS---RAFAKVQFADNIS 57
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIV 289
AD I L N L +G S LK W M DIV
Sbjct: 58 ADKIITLANNRLYFGSSYLKAWEMKTDIV 86
>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
gi|482575337|gb|EOA39524.1| hypothetical protein
CARUB_v10008144mg [Capsella rubella]
Length = 1107
Score = 82.4 bits (202), Expect = 6e-14
Identities = 47/92 (51%), Positives = 57/92 (61%)
Frame = +2
Query: 23 MGRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADS 202
MG+TIQV GFP V+ + VK FLE G GTVYA+K+R K G R FA+VQFT+
Sbjct: 1 MGKTIQVFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGG--PRVFAIVQFTSERH 58
Query: 203 ADLITLLINRHLRYGISNLKVWAMGNDIVPRP 298
A LI + L YG S LK + M DIVP+P
Sbjct: 59 ARLIITMAAERLYYGRSYLKAFEMEQDIVPKP 90
>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
gi|548853371|gb|ERN11375.1| hypothetical protein
AMTR_s00176p00039530 [Amborella trichopoda]
Length = 1210
Score = 81.3 bits (199), Expect = 1e-13
Identities = 50/93 (53%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Frame = +2
Query: 26 GRTIQVSGFPSSVSAEVVKEFLENYAGKGTVYALKIRPCKVKGLQRRAFAVVQFTTADSA 205
GRT+QVSGFP AE VK+FLE+ G GTVY LKIR K K R FA+VQFTT+ SA
Sbjct: 75 GRTVQVSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKP-NSRVFAIVQFTTSKSA 133
Query: 206 DLITLLI--NRHLRYGISNLKVWAMGNDIVPRP 298
++I L + L +G S + V M NDIVP P
Sbjct: 134 EVIYSLAPQPKSLYFGNSYVIVRYMENDIVPNP 166