BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00018779
         (496 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    60   3e-07
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            60   4e-07
ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein A...    56   4e-06

>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 46/152 (30%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
 Frame = -2

Query: 435  PLASKSL---LGMGGIPSFGWIIGITKECWTHVIPHLPRMG------LGMHRRCKVEQYL 283
            PLA K +   +G GG  SF W      +CWT + P +  +G      L +    KV   +
Sbjct: 790  PLAEKFIKAKVGNGGTVSF-WF-----DCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAI 843

Query: 282  EGGGWNLPFTRNNDIQITWEQCKGLYH-LPTSGSDMVIWSPSPTGL--FSLSSAWERVRC 112
            +G GW LP +R+            L    P   SD   W         FS +  WE +R 
Sbjct: 844  DGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRP 903

Query: 111  RFPNWHWASVMWFMKCVPKHSLLCWKIALEKI 16
            R P   WA  +WF   VPKH+   W   L ++
Sbjct: 904  RRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRL 935


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 46/152 (30%), Positives = 63/152 (41%), Gaps = 12/152 (7%)
 Frame = -2

Query: 435  PLASKSL---LGMGGIPSFGWIIGITKECWTHVIPHLPRMG------LGMHRRCKVEQYL 283
            PLA K +   +G GG  SF W      +CWT + P +  +G      L +    KV   +
Sbjct: 790  PLAEKFIKAKVGNGGTVSF-WF-----DCWTSLGPLIKYLGDVGSRPLRIPFSAKVADAI 843

Query: 282  EGGGWNLPFTRNNDIQITWEQCKGLYH-LPTSGSDMVIWSPSPTGL--FSLSSAWERVRC 112
            +G GW LP +R+            L    P   SD   W         FS +  WE +R 
Sbjct: 844  DGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQGFSAAKTWEVLRP 903

Query: 111  RFPNWHWASVMWFMKCVPKHSLLCWKIALEKI 16
            R P   WA  +WF   VPKH+   W   L ++
Sbjct: 904  RRPVKRWARSVWFKGAVPKHAFNFWTAQLNRL 935


>ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 751

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
 Frame = -2

Query: 384 WIIG------ITKECWTH--VIPHLPRMGLGMHRRCKVEQYLEGGGWNLPFTRNNDIQIT 229
           WIIG         + W H  +I  L    L      +V  ++    W LP   +N     
Sbjct: 365 WIIGDGNSILFWSDKWLHSSIIQQLNMGSLSHLLNSRVADFIWDQQWALPSHFSNLFPDC 424

Query: 228 WEQCKGLYHLPTSGSDMVIWSPSPTGLFSLSSAWERVRCRFPNWHWASVMWFMKCVPKHS 49
            +Q   +    T  SD++IW  S +G+FS S  +E VR  F    WAS +W     P++S
Sbjct: 425 AKQILEIPLPNTPESDILIWEHSSSGIFSFSDGYELVRPYFEKLDWASSVWHSFIPPRYS 484

Query: 48  LLCWKI 31
           +L W+I
Sbjct: 485 VLAWRI 490