BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00018311
         (539 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]   105   7e-49
ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prun...   101   9e-49
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 100   2e-47
ref|XP_006494026.1| PREDICTED: uncharacterized protein LOC102613...   104   3e-47
ref|XP_004309164.1| PREDICTED: uncharacterized protein LOC101300...    98   6e-47
ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752...    97   5e-46
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]              95   5e-46
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                          96   6e-46
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                  99   6e-46
ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prun...    97   6e-46
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...    98   8e-46
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]        98   8e-46
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...    96   1e-45
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   102   1e-45
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   102   1e-45
gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptas...   103   1e-45
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]   105   2e-45
emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]   104   2e-45
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...    98   3e-45
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...    96   3e-45

>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score =  105 bits (263), Expect(3) = 7e-49
 Identities = 49/63 (77%), Positives = 58/63 (92%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LLTPKKDGS RMCV+SRAIN+IT+KY +PIPRLDDMLDM+ G+ +FSKIDL+SGYHQI
Sbjct: 662 PALLTPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQI 721

Query: 403 RIQ 411
           RI+
Sbjct: 722 RIR 724



 Score = 79.7 bits (195), Expect(3) = 7e-49
 Identities = 38/74 (51%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           +L++F +++PVEL + LPP R IQH IDL+PGAS  NL  YRM+P               
Sbjct: 589 ILDDFSDLWPVELPNELPPMRDIQHAIDLIPGASLPNLPAYRMNPTEHAELKRQVDELLT 648

Query: 183 KGFIRESMSPCAVP 224
           KGFIRES+SPC VP
Sbjct: 649 KGFIRESLSPCGVP 662



 Score = 55.5 bits (132), Expect(3) = 7e-49
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 428 KRHSKLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K   K K GLYEW +MPFGL+NAPSTFMR M QVLK
Sbjct: 730 KTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLK 765


>ref|XP_007210190.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
           gi|462405925|gb|EMJ11389.1| hypothetical protein
           PRUPE_ppa017790mg [Prunus persica]
          Length = 1485

 Score =  101 bits (252), Expect(3) = 9e-49
 Identities = 48/63 (76%), Positives = 57/63 (90%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKD + RMCV+SRAIN+ITVKY +PIPRL+DMLD+L G+KVFSKIDL+SGYHQI
Sbjct: 665 PVLLVPKKDKTWRMCVDSRAINKITVKYRFPIPRLEDMLDVLSGSKVFSKIDLRSGYHQI 724

Query: 403 RIQ 411
           RI+
Sbjct: 725 RIR 727



 Score = 85.1 bits (209), Expect(3) = 9e-49
 Identities = 42/74 (56%), Positives = 47/74 (63%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           +L +FQE+F   L + LPP R IQH IDLVPGAS  NL HYRM PK              
Sbjct: 592 ILSQFQELFSENLPNELPPMRDIQHRIDLVPGASLQNLPHYRMSPKENDILREQIEELLR 651

Query: 183 KGFIRESMSPCAVP 224
           KGFIRES+SPCAVP
Sbjct: 652 KGFIRESLSPCAVP 665



 Score = 53.9 bits (128), Expect(3) = 9e-49
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GL+EW +MPFGLSN PSTFMR MNQVL+
Sbjct: 737 KSKDGLFEWLVMPFGLSNTPSTFMRLMNQVLR 768


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 99.8 bits (247), Expect(3) = 2e-47
 Identities = 46/63 (73%), Positives = 53/63 (84%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDG+ RMC +SRAIN ITVKY +PIPRLDDMLD L GA +FSKIDL+ GYHQ+
Sbjct: 655 PALLVPKKDGTWRMCTDSRAINNITVKYRFPIPRLDDMLDELSGASIFSKIDLRQGYHQV 714

Query: 403 RIQ 411
           RI+
Sbjct: 715 RIR 717



 Score = 82.0 bits (201), Expect(3) = 2e-47
 Identities = 40/74 (54%), Positives = 46/74 (62%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           L++ FQEVFP EL SGLPP R I+HHIDLVPG+   N   YR  P               
Sbjct: 582 LIQRFQEVFPDELPSGLPPLRGIEHHIDLVPGSVLPNKPAYRCDPNATKELQHQIEELMA 641

Query: 183 KGFIRESMSPCAVP 224
           KGF+RES+SPCAVP
Sbjct: 642 KGFVRESLSPCAVP 655



 Score = 54.3 bits (129), Expect(3) = 2e-47
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGLSNAPSTFMR M +VL+
Sbjct: 727 KTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLR 758


>ref|XP_006494026.1| PREDICTED: uncharacterized protein LOC102613249 [Citrus sinensis]
          Length = 559

 Score =  104 bits (259), Expect(3) = 3e-47
 Identities = 50/63 (79%), Positives = 56/63 (88%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDG+ RMCV+ RAIN+ITVKY +PIPRLDDMLD LHG+ VFSKIDLKSGYHQI
Sbjct: 389 PVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDELHGSCVFSKIDLKSGYHQI 448

Query: 403 RIQ 411
           RI+
Sbjct: 449 RIR 451



 Score = 74.3 bits (181), Expect(3) = 3e-47
 Identities = 35/72 (48%), Positives = 45/72 (62%)
 Frame = +3

Query: 9   EEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXXKG 188
           E+F +VFP E+ +GLP  R I+H ID VPGA+ SN   YR +P+              KG
Sbjct: 318 EDFDDVFPNEVPNGLPHTRGIEHQIDFVPGATISNRPEYRSNPEETKELQRQVEELLAKG 377

Query: 189 FIRESMSPCAVP 224
           ++RESMSPCAVP
Sbjct: 378 YVRESMSPCAVP 389



 Score = 56.6 bits (135), Expect(3) = 3e-47
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGLSNAPSTFMR MN VL++
Sbjct: 461 KTKYGLYEWLVMPFGLSNAPSTFMRLMNHVLRA 493


>ref|XP_004309164.1| PREDICTED: uncharacterized protein LOC101300012 [Fragaria vesca
           subsp. vesca]
          Length = 1034

 Score = 97.8 bits (242), Expect(3) = 6e-47
 Identities = 46/63 (73%), Positives = 56/63 (88%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKD S RMCV+SRAIN+IT+KY +PIP+L+DMLD+L G+ VFSKIDL+SGYHQI
Sbjct: 702 PVLLVPKKDRSWRMCVDSRAINKITIKYRFPIPQLEDMLDVLGGSVVFSKIDLRSGYHQI 761

Query: 403 RIQ 411
           RI+
Sbjct: 762 RIK 764



 Score = 78.6 bits (192), Expect(3) = 6e-47
 Identities = 40/74 (54%), Positives = 46/74 (62%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL++F+E+   +L + LPP R IQH IDLV GAS  NL HYRM PK              
Sbjct: 629 LLQDFEELLADDLPNELPPMRDIQHQIDLVSGASLPNLPHYRMSPKENEILKEKIEELLR 688

Query: 183 KGFIRESMSPCAVP 224
           KG IRESMSPCAVP
Sbjct: 689 KGHIRESMSPCAVP 702



 Score = 58.2 bits (139), Expect(3) = 6e-47
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGLSNAPSTFMR MNQVLK
Sbjct: 774 KSKDGLYEWLVMPFGLSNAPSTFMRVMNQVLK 805


>ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752491 [Setaria italica]
          Length = 1295

 Score = 96.7 bits (239), Expect(3) = 5e-46
 Identities = 45/63 (71%), Positives = 54/63 (85%)
 Frame = +1

Query: 223  PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
            P LL PKKDGS RMCV+ RAIN ITV+Y +PIPRLDDMLD L G+ +F+KIDL+SGYHQI
Sbjct: 826  PVLLVPKKDGSWRMCVDCRAINAITVRYRHPIPRLDDMLDELSGSTIFTKIDLRSGYHQI 885

Query: 403  RIQ 411
            R++
Sbjct: 886  RMK 888



 Score = 79.0 bits (193), Expect(3) = 5e-46
 Identities = 37/74 (50%), Positives = 49/74 (66%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL++F++VFP E+ +GLPP R I+H IDLVPGAS  N   YR +P+              
Sbjct: 753 LLQDFKDVFPDEVPAGLPPLRGIEHQIDLVPGASLPNRPAYRTNPEETKEIQQQVKELLD 812

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPCAVP
Sbjct: 813 KGYVRESLSPCAVP 826



 Score = 55.8 bits (133), Expect(3) = 5e-46
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGL+NAPSTFMR MN VL++
Sbjct: 898 KTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRA 930


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score = 95.1 bits (235), Expect(3) = 5e-46
 Identities = 45/63 (71%), Positives = 53/63 (84%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P +L PKKDGS RMC + RAI+ IT+KY +PIPRLDD+LD L GA +FSKIDLKSGYHQI
Sbjct: 647 PIILVPKKDGSWRMCTDCRAISNITIKYRHPIPRLDDLLDELFGACLFSKIDLKSGYHQI 706

Query: 403 RIQ 411
           RI+
Sbjct: 707 RIR 709



 Score = 80.9 bits (198), Expect(3) = 5e-46
 Identities = 39/74 (52%), Positives = 49/74 (66%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+EF+E+FP E+ SGLPP R I+HHIDL PGAS  N   YR +P+              
Sbjct: 574 LLQEFKELFPEEVPSGLPPIRGIEHHIDLNPGASLPNRPAYRSNPQQTQEIQRQVAELIS 633

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPCAVP
Sbjct: 634 KGWVRESLSPCAVP 647



 Score = 55.5 bits (132), Expect(3) = 5e-46
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGL+NAPSTFMR MN VL+
Sbjct: 719 KTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLR 750


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 96.3 bits (238), Expect(3) = 6e-46
 Identities = 44/63 (69%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P +L PKKDG+ RMCV+ RAIN IT++Y +PIPRLDDMLD L GA VFSK+DL+SGYHQI
Sbjct: 760 PVILVPKKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQI 819

Query: 403 RIQ 411
           R++
Sbjct: 820 RMK 822



 Score = 78.2 bits (191), Expect(3) = 6e-46
 Identities = 35/74 (47%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           +L+E+ +VFP E+  GLPP R I+H IDL+PGAS  N + YR +P+              
Sbjct: 687 ILQEYSDVFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 746

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPCAVP
Sbjct: 747 KGYVRESLSPCAVP 760



 Score = 56.6 bits (135), Expect(3) = 6e-46
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGL+NAPSTFMR MN+VL++
Sbjct: 832 KTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRA 864


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 98.6 bits (244), Expect(3) = 6e-46
 Identities = 45/63 (71%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDGS RMC +SRAIN IT+KY +PIPRLDD+LD L GA++FSKIDL+ GYHQ+
Sbjct: 643 PALLVPKKDGSWRMCTDSRAINNITIKYRFPIPRLDDILDELSGAQLFSKIDLRQGYHQV 702

Query: 403 RIQ 411
           RI+
Sbjct: 703 RIK 705



 Score = 78.2 bits (191), Expect(3) = 6e-46
 Identities = 36/74 (48%), Positives = 47/74 (63%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+ +++VFP EL SGLPP R I+H ID +PGA+  N + YR  PK              
Sbjct: 570 LLQSYEDVFPNELPSGLPPLRGIEHQIDFIPGATLPNKAAYRSDPKATQELQQQIGELVS 629

Query: 183 KGFIRESMSPCAVP 224
           KGF+RES+SPC+VP
Sbjct: 630 KGFVRESLSPCSVP 643



 Score = 54.3 bits (129), Expect(3) = 6e-46
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGLSNAPSTFMR M +VL+
Sbjct: 715 KTKHGLYEWLVMPFGLSNAPSTFMRLMTEVLR 746


>ref|XP_007220740.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
           gi|462417202|gb|EMJ21939.1| hypothetical protein
           PRUPE_ppa023598mg [Prunus persica]
          Length = 1457

 Score = 97.1 bits (240), Expect(3) = 6e-46
 Identities = 46/63 (73%), Positives = 56/63 (88%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKD + RMCV+SRAIN+ITVK  +PIPRL+DMLD+L G++VFSKIDL+SGYHQI
Sbjct: 655 PVLLVPKKDKTWRMCVDSRAINKITVKSRFPIPRLEDMLDVLSGSRVFSKIDLRSGYHQI 714

Query: 403 RIQ 411
           RI+
Sbjct: 715 RIR 717



 Score = 78.6 bits (192), Expect(3) = 6e-46
 Identities = 39/74 (52%), Positives = 46/74 (62%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           +L +FQE+   +L + LP  R IQH IDLVPGA+  NL HYRM PK              
Sbjct: 582 ILSQFQELLSEKLPNELPSMRDIQHRIDLVPGANLPNLPHYRMSPKENDILREQIEELLQ 641

Query: 183 KGFIRESMSPCAVP 224
           KGFIRES+SPCAVP
Sbjct: 642 KGFIRESLSPCAVP 655



 Score = 55.5 bits (132), Expect(3) = 6e-46
 Identities = 25/32 (78%), Positives = 28/32 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GL+EW +MPFGLSNAPSTFMR MNQVL+
Sbjct: 727 KSKDGLFEWLVMPFGLSNAPSTFMRLMNQVLR 758


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1616

 Score = 97.8 bits (242), Expect(3) = 8e-46
 Identities = 46/63 (73%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDGS RMCV+ RAIN IT++Y +PIPRLDDMLD L G+ VFSKIDL+SGYHQI
Sbjct: 785 PVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQI 844

Query: 403 RIQ 411
           R++
Sbjct: 845 RMK 847



 Score = 76.3 bits (186), Expect(3) = 8e-46
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+E+ ++FP E+  GLPP R I+H IDL+PGAS  N + YR +P+              
Sbjct: 712 LLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 771

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPC+VP
Sbjct: 772 KGYVRESLSPCSVP 785



 Score = 56.6 bits (135), Expect(3) = 8e-46
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGL+NAPSTFMR MN+VL++
Sbjct: 857 KTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRA 889


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 97.8 bits (242), Expect(3) = 8e-46
 Identities = 46/63 (73%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDGS RMCV+ RAIN IT++Y +PIPRLDDMLD L G+ VFSKIDL+SGYHQI
Sbjct: 785 PVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQI 844

Query: 403 RIQ 411
           R++
Sbjct: 845 RMK 847



 Score = 76.3 bits (186), Expect(3) = 8e-46
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+E+ ++FP E+  GLPP R I+H IDL+PGAS  N + YR +P+              
Sbjct: 712 LLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 771

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPC+VP
Sbjct: 772 KGYVRESLSPCSVP 785



 Score = 56.6 bits (135), Expect(3) = 8e-46
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGL+NAPSTFMR MN+VL++
Sbjct: 857 KTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRA 889


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
           gi|31431012|gb|AAP52850.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 2447

 Score = 96.3 bits (238), Expect(3) = 1e-45
 Identities = 44/63 (69%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P +L PKKDGS RMCV+ RAIN IT++Y +PIPRLDDMLD L G+ VFSK+DL+SGYHQI
Sbjct: 757 PVILVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQI 816

Query: 403 RIQ 411
           R++
Sbjct: 817 RMK 819



 Score = 77.8 bits (190), Expect(3) = 1e-45
 Identities = 35/74 (47%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           +L+E+ +VFP E+  GLPP R I+H IDL+PGAS  N + YR +P+              
Sbjct: 684 ILQEYSDVFPKEVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLD 743

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPCAVP
Sbjct: 744 KGYVRESLSPCAVP 757



 Score = 56.2 bits (134), Expect(3) = 1e-45
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGL+NAPSTFMR MN+VL+
Sbjct: 829 KTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLR 860


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  102 bits (254), Expect(3) = 1e-45
 Identities = 48/62 (77%), Positives = 55/62 (88%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDG+ RMCV+ RAIN+ITVKY +PIPRLDDMLD L G+K+FSKIDLKSGYHQI
Sbjct: 740 PVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQI 799

Query: 403 RI 408
           R+
Sbjct: 800 RL 801



 Score = 73.2 bits (178), Expect(3) = 1e-45
 Identities = 34/74 (45%), Positives = 44/74 (59%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+ F++VFP +   GLPP R I+H ID VPG+   N   YR +P+              
Sbjct: 667 LLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLV 726

Query: 183 KGFIRESMSPCAVP 224
           KGF+RESMSPC+VP
Sbjct: 727 KGFVRESMSPCSVP 740



 Score = 54.7 bits (130), Expect(3) = 1e-45
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGL+NAPSTFMR MN V K
Sbjct: 812 KTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFK 843


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  102 bits (254), Expect(3) = 1e-45
 Identities = 48/62 (77%), Positives = 55/62 (88%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDG+ RMCV+ RAIN+ITVKY +PIPRLDDMLD L G+K+FSKIDLKSGYHQI
Sbjct: 740 PVLLVPKKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQI 799

Query: 403 RI 408
           R+
Sbjct: 800 RL 801



 Score = 73.2 bits (178), Expect(3) = 1e-45
 Identities = 34/74 (45%), Positives = 44/74 (59%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+ F++VFP +   GLPP R I+H ID VPG+   N   YR +P+              
Sbjct: 667 LLQNFEDVFPDDTPKGLPPLRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLV 726

Query: 183 KGFIRESMSPCAVP 224
           KGF+RESMSPC+VP
Sbjct: 727 KGFVRESMSPCSVP 740



 Score = 54.7 bits (130), Expect(3) = 1e-45
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGL+NAPSTFMR MN V K
Sbjct: 812 KTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFK 843


>gb|ABD33247.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 386

 Score =  103 bits (258), Expect(3) = 1e-45
 Identities = 49/63 (77%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P +L PKKDG+ RMC N RAIN IT+KY +PIPRLDDMLD LHGA VFSKIDLKSGYHQI
Sbjct: 237 PVILVPKKDGTWRMCTNCRAINNITIKYRHPIPRLDDMLDELHGACVFSKIDLKSGYHQI 296

Query: 403 RIQ 411
           RI+
Sbjct: 297 RIR 299



 Score = 71.2 bits (173), Expect(3) = 1e-45
 Identities = 33/74 (44%), Positives = 45/74 (60%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL++F +VFP EL  GLPP R I+HHIDL+P AS  N   YR +P+              
Sbjct: 164 LLKDFADVFPKELPHGLPPLRGIEHHIDLIPSASLPNRPPYRSNPEQTKEIETQVHKLLE 223

Query: 183 KGFIRESMSPCAVP 224
            G+ ++S+SPCA+P
Sbjct: 224 NGWFQDSLSPCAMP 237



 Score = 55.1 bits (131), Expect(3) = 1e-45
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K K GLYEW +MPFGL+NAPSTFMR MN +L+
Sbjct: 309 KTKFGLYEWLVMPFGLTNAPSTFMRLMNHILR 340


>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
          Length = 1392

 Score =  105 bits (263), Expect(3) = 2e-45
 Identities = 49/63 (77%), Positives = 58/63 (92%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LLTPKKDGS RMCV+SRAIN+IT+KY +PIPRLDDMLDM+ G+ +FSKIDL+SGYHQI
Sbjct: 621 PALLTPKKDGSWRMCVDSRAINKITIKYRFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQI 680

Query: 403 RIQ 411
           RI+
Sbjct: 681 RIR 683



 Score = 67.8 bits (164), Expect(3) = 2e-45
 Identities = 34/63 (53%), Positives = 38/63 (60%)
 Frame = +3

Query: 36  ELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXXKGFIRESMSPC 215
           EL + LPP R IQH IDL+PGAS  NL  YRM+P               KGFIRES+SPC
Sbjct: 559 ELPNELPPMRDIQHAIDLIPGASLPNLPAYRMNPTEHAELKRQVDELLTKGFIRESLSPC 618

Query: 216 AVP 224
            VP
Sbjct: 619 GVP 621



 Score = 55.5 bits (132), Expect(3) = 2e-45
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 428 KRHSKLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K   K K GLYEW +MPFGL+NAPSTFMR M QVLK
Sbjct: 689 KTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLK 724


>emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]
          Length = 1323

 Score =  104 bits (260), Expect(3) = 2e-45
 Identities = 49/61 (80%), Positives = 56/61 (91%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           PTLLTPKKDGS RMCV+SRAIN+IT KY +PIPRLDDMLDM+ G+ +FSKIDL+SGYHQI
Sbjct: 550 PTLLTPKKDGSWRMCVDSRAINKITTKYQFPIPRLDDMLDMMVGSVIFSKIDLRSGYHQI 609

Query: 403 R 405
           R
Sbjct: 610 R 610



 Score = 68.9 bits (167), Expect(3) = 2e-45
 Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = +3

Query: 6   LEEFQEV---FPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXX 176
           +EEF+E    +P  L + LPP R +QH IDL+PGAS  NL  YRM+P             
Sbjct: 475 VEEFKEQDKEYPANLPNQLPPMRDVQHAIDLIPGASLPNLXAYRMNPTEHXELKRQVDEL 534

Query: 177 XXKGFIRESMSPCAVPNSSNSKE 245
             K FIRES+SPC VP     K+
Sbjct: 535 LTKCFIRESLSPCGVPTLLTPKK 557



 Score = 55.5 bits (132), Expect(3) = 2e-45
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 428 KRHSKLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLK 535
           K   K K GLYEW +MPFGL+NAPSTFMR M QVLK
Sbjct: 618 KTSFKTKDGLYEWLVMPFGLTNAPSTFMRIMTQVLK 653


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|15217296|gb|AAK92640.1|AC079634_1 Putative
           retroelement [Oryza sativa Japonica Group]
           gi|31431373|gb|AAP53161.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1708

 Score = 97.8 bits (242), Expect(3) = 3e-45
 Identities = 46/63 (73%), Positives = 54/63 (85%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDGS RMCV+ RAIN IT++Y +PIPRLDDMLD L G+ VFSKIDL+SGYHQI
Sbjct: 785 PVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQI 844

Query: 403 RIQ 411
           R++
Sbjct: 845 RMK 847



 Score = 75.9 bits (185), Expect(3) = 3e-45
 Identities = 33/74 (44%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+E+ ++FP E+  GLPP R I+H IDL+PGAS  N + YR +P+              
Sbjct: 712 LLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 771

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPC++P
Sbjct: 772 KGYVRESLSPCSIP 785



 Score = 55.1 bits (131), Expect(3) = 3e-45
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGL+NAPSTF+R MN+VL++
Sbjct: 857 KTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRA 889


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score = 95.9 bits (237), Expect(3) = 3e-45
 Identities = 46/63 (73%), Positives = 53/63 (84%)
 Frame = +1

Query: 223 PTLLTPKKDGSRRMCVNSRAINRITVKY*YPIPRLDDMLDMLHGAKVFSKIDLKSGYHQI 402
           P LL PKKDGS RMCV+ RAIN IT++Y +PIPRLDDMLD L G+ VFSKIDL SGYHQI
Sbjct: 681 PVLLVPKKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYHQI 740

Query: 403 RIQ 411
           R++
Sbjct: 741 RMK 743



 Score = 76.3 bits (186), Expect(3) = 3e-45
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +3

Query: 3   LLEEFQEVFPVELQSGLPPKRSIQHHIDLVPGASQSNLSHYRMHPKXXXXXXXXXXXXXX 182
           LL+E+ ++FP E+  GLPP R I+H IDL+PGAS  N + YR +P+              
Sbjct: 608 LLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLD 667

Query: 183 KGFIRESMSPCAVP 224
           KG++RES+SPC+VP
Sbjct: 668 KGYVRESLSPCSVP 681



 Score = 56.6 bits (135), Expect(3) = 3e-45
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 440 KLKMGLYEWTMMPFGLSNAPSTFMRSMNQVLKS 538
           K K GLYEW +MPFGL+NAPSTFMR MN+VL++
Sbjct: 753 KTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRA 785