BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00017887
         (277 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003569731.1| PREDICTED: H/ACA ribonucleoprotein complex s...    80   4e-13
ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex s...    76   4e-12
ref|XP_006396764.1| hypothetical protein EUTSA_v10028535mg [Eutr...    75   7e-12
ref|XP_006396760.1| hypothetical protein EUTSA_v10029296mg [Eutr...    75   7e-12
ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex s...    74   2e-11
gb|ACU23412.1| unknown [Glycine max]                                   74   2e-11
ref|XP_006658871.1| PREDICTED: H/ACA ribonucleoprotein complex s...    73   5e-11
gb|AAK83589.1| AT3g57150/F24I3_230 [Arabidopsis thaliana]              72   8e-11
ref|NP_191274.1| putative pseudouridine synthase NAP57 [Arabidop...    72   8e-11
ref|XP_003531534.2| PREDICTED: H/ACA ribonucleoprotein complex s...    71   1e-10
ref|XP_007148382.1| hypothetical protein PHAVU_006G203800g [Phas...    71   2e-10
gb|EMT07357.1| H/ACA ribonucleoprotein complex subunit 4 [Aegilo...    71   2e-10
ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonu...    71   2e-10
ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex s...    71   2e-10
ref|XP_007028578.1| NAP57 isoform 2 [Theobroma cacao] gi|5087171...    70   2e-10
ref|XP_007028577.1| NAP57 isoform 1 [Theobroma cacao] gi|5087171...    70   2e-10
ref|XP_006491562.1| PREDICTED: H/ACA ribonucleoprotein complex s...    70   4e-10
gb|EMS59226.1| H/ACA ribonucleoprotein complex subunit 4 [Tritic...    70   4e-10
ref|NP_001060391.1| Os07g0636000 [Oryza sativa Japonica Group] g...    70   4e-10
ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arab...    70   4e-10

>ref|XP_003569731.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like
           [Brachypodium distachyon]
          Length = 591

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 43/78 (55%), Positives = 49/78 (62%), Gaps = 8/78 (10%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMA----VDDGHKNENE----S 121
           LDKHGK  EKTP EWLRNVV PTGGDAM+A  AAA EP        D   KN++E     
Sbjct: 413 LDKHGKPTEKTPAEWLRNVVLPTGGDAMIASIAAAPEPEKVKVEQADVKEKNKHEEDKAD 472

Query: 120 GGHKRKLDESGSPAPIPS 67
           GG KRK+DE  + A  P+
Sbjct: 473 GGRKRKVDEDDASASTPA 490


>ref|XP_002270073.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Vitis
           vinifera]
          Length = 586

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           L+KHGK NE TP EWLRNVV PTGGD+MVA  AAA EP++  +   K E +    KRKL+
Sbjct: 401 LNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEPTVKAETDVKEEIDGEQRKRKLN 460

Query: 96  ES-GSPAPIPS 67
           ES   P  +P+
Sbjct: 461 ESTDDPVTVPA 471


>ref|XP_006396764.1| hypothetical protein EUTSA_v10028535mg [Eutrema salsugineum]
           gi|557097781|gb|ESQ38217.1| hypothetical protein
           EUTSA_v10028535mg [Eutrema salsugineum]
          Length = 583

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESG----GHK 109
           LDKHGK NEKTPVEW RNVV PTGGDAM+A  AAA E      D  K E E+G      K
Sbjct: 380 LDKHGKPNEKTPVEWSRNVVLPTGGDAMIAGAAAAPE-----KDEKKVEAENGEAGEARK 434

Query: 108 RKLDESGSPAPI 73
           RK D + SPAP+
Sbjct: 435 RKHDGNDSPAPV 446


>ref|XP_006396760.1| hypothetical protein EUTSA_v10029296mg [Eutrema salsugineum]
           gi|557097777|gb|ESQ38213.1| hypothetical protein
           EUTSA_v10029296mg [Eutrema salsugineum]
          Length = 550

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 43/72 (59%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESG----GHK 109
           LDKHGK NEKTPVEW RNVV PTGGDAM+A  AAA E      D  K E E+G      K
Sbjct: 380 LDKHGKPNEKTPVEWSRNVVLPTGGDAMIAGAAAAPE-----KDEKKVEAENGEAGEARK 434

Query: 108 RKLDESGSPAPI 73
           RK D + SPAP+
Sbjct: 435 RKHDGNDSPAPV 446


>ref|XP_003545704.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
           max]
          Length = 589

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           LDKHGK NEKTP EWLRN+V PTGGD+++A  AAA EP    D   K E +  G KRK  
Sbjct: 395 LDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPE--DDKIQKKEGDGEGKKRKKH 452

Query: 96  ES-GSPAPIPS 67
           ES  SP  +P+
Sbjct: 453 ESTDSPVAVPA 463


>gb|ACU23412.1| unknown [Glycine max]
          Length = 257

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 40/71 (56%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           LDKHGK NEKTP EWLRN+V PTGGD+++A  AAA EP    D   K E +  G KRK  
Sbjct: 63  LDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGLAAAPEPE--DDKIQKKEGDGEGKKRKKH 120

Query: 96  ES-GSPAPIPS 67
           ES  SP  +P+
Sbjct: 121 ESTDSPVAVPA 131


>ref|XP_006658871.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Oryza
           brachyantha]
          Length = 534

 Score = 72.8 bits (177), Expect = 5e-11
 Identities = 40/87 (45%), Positives = 52/87 (59%), Gaps = 18/87 (20%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAA-------SEPSMAVDD--------- 145
           LDKHGK NEKTP EWLRNV  PTGGDAM+A  AAA       +EP + V +         
Sbjct: 346 LDKHGKPNEKTPAEWLRNVALPTGGDAMIASIAAAPEEAKVKAEPDVVVTEEVKEKKKKK 405

Query: 144 GHKNENESG--GHKRKLDESGSPAPIP 70
            HK+E ++   G KRK+++  + A +P
Sbjct: 406 KHKDEEDASDEGRKRKIEDDDAAASVP 432


>gb|AAK83589.1| AT3g57150/F24I3_230 [Arabidopsis thaliana]
          Length = 164

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/68 (55%), Positives = 43/68 (63%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           LDKHGK NEKTPVEW RNVV PTGGDA++A  AAA E   A  D    E      ++  D
Sbjct: 2   LDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKA--DAENGEAGEARKRKHDD 59

Query: 96  ESGSPAPI 73
            S SPAP+
Sbjct: 60  SSDSPAPV 67


>ref|NP_191274.1| putative pseudouridine synthase NAP57 [Arabidopsis thaliana]
           gi|67460428|sp|Q9LD90.1|CBF5_ARATH RecName: Full=H/ACA
           ribonucleoprotein complex subunit 4; AltName: Full=CBF5
           homolog; AltName: Full=Dyskerin; AltName:
           Full=Nopp-140-associated protein of 57 kDa homolog;
           Short=AtNAP57; AltName: Full=Nucleolar protein NAP57
           homolog gi|8901186|gb|AAF43210.2|AF234984_1 putative
           pseudouridine synthase [Arabidopsis thaliana]
           gi|6911885|emb|CAB72185.1| putative protein [Arabidopsis
           thaliana] gi|28392852|gb|AAO41863.1| unknown protein
           [Arabidopsis thaliana] gi|225898727|dbj|BAH30494.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332646100|gb|AEE79621.1| putative pseudouridine
           synthase NAP57 [Arabidopsis thaliana]
          Length = 565

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 38/68 (55%), Positives = 43/68 (63%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           LDKHGK NEKTPVEW RNVV PTGGDA++A  AAA E   A  D    E      ++  D
Sbjct: 389 LDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAAPEEIKA--DAENGEAGEARKRKHDD 446

Query: 96  ESGSPAPI 73
            S SPAP+
Sbjct: 447 SSDSPAPV 454


>ref|XP_003531534.2| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Glycine
           max]
          Length = 580

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 39/64 (60%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDD--GHKNENESGGHKRK 103
           LDKHGK NEKTP EWLRN+V PTGGD+M+A  AAA EP    DD    K E +  G KRK
Sbjct: 387 LDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGLAAAPEPE---DDKLQKKEEGDGEGKKRK 443

Query: 102 LDES 91
             ES
Sbjct: 444 KHES 447


>ref|XP_007148382.1| hypothetical protein PHAVU_006G203800g [Phaseolus vulgaris]
           gi|561021605|gb|ESW20376.1| hypothetical protein
           PHAVU_006G203800g [Phaseolus vulgaris]
          Length = 571

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 34/70 (48%), Positives = 47/70 (67%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           LDKHGK NEKTP EWLRN+V PTGGD+++A  AAA EP     +  K+ +  G  ++K +
Sbjct: 391 LDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEP-----EDEKDGDGEGRKRKKHE 445

Query: 96  ESGSPAPIPS 67
            + SP  +P+
Sbjct: 446 STDSPVSVPA 455


>gb|EMT07357.1| H/ACA ribonucleoprotein complex subunit 4 [Aegilops tauschii]
          Length = 572

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 39/73 (53%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEP---SMAVDDGHKNENESGGHKR 106
           LDKHGK  EKTP EWLRNVV PTGGDAM+A  AAA EP    +   D   +E      KR
Sbjct: 379 LDKHGKPTEKTPAEWLRNVVLPTGGDAMIASLAAAPEPEKVKVEQQDVVPSEQVKEKKKR 438

Query: 105 KLDESGSPAPIPS 67
           K DE    A  P+
Sbjct: 439 KTDEDDVTASTPA 451


>ref|XP_004157453.1| PREDICTED: LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex
           subunit 4-like [Cucumis sativus]
          Length = 566

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVA----EHAAASEPSMAVDDGHKNENESGGHK 109
           LDKHGK NE TP EW+RN+V PTGGD +VA      +A ++P+ A + G     + GG K
Sbjct: 386 LDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEESG----KDDGGRK 441

Query: 108 RKLDESGSPAP 76
           RKLDE    AP
Sbjct: 442 RKLDEETEAAP 452


>ref|XP_004137598.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like, partial
           [Cucumis sativus]
          Length = 564

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVA----EHAAASEPSMAVDDGHKNENESGGHK 109
           LDKHGK NE TP EW+RN+V PTGGD +VA      +A ++P+ A + G     + GG K
Sbjct: 386 LDKHGKPNENTPQEWMRNLVLPTGGDVLVASAFVSDSATAKPTAAEESG----KDDGGRK 441

Query: 108 RKLDESGSPAP 76
           RKLDE    AP
Sbjct: 442 RKLDEETEAAP 452


>ref|XP_007028578.1| NAP57 isoform 2 [Theobroma cacao] gi|508717183|gb|EOY09080.1| NAP57
           isoform 2 [Theobroma cacao]
          Length = 583

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 39/85 (45%), Positives = 46/85 (54%), Gaps = 19/85 (22%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDD---------------- 145
           LDKHGK N+ TP EWLRNVV P GGD+MVA  AA++EP++   D                
Sbjct: 393 LDKHGKPNDSTPKEWLRNVVLPAGGDSMVASLAASAEPAVKDSDTAVVEKEITVVEKEKE 452

Query: 144 ---GHKNENESGGHKRKLDESGSPA 79
                K E +  GHKRKLD S   A
Sbjct: 453 KKKKGKGEEDGEGHKRKLDGSSDSA 477


>ref|XP_007028577.1| NAP57 isoform 1 [Theobroma cacao] gi|508717182|gb|EOY09079.1| NAP57
           isoform 1 [Theobroma cacao]
          Length = 614

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 39/85 (45%), Positives = 46/85 (54%), Gaps = 19/85 (22%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDD---------------- 145
           LDKHGK N+ TP EWLRNVV P GGD+MVA  AA++EP++   D                
Sbjct: 393 LDKHGKPNDSTPKEWLRNVVLPAGGDSMVASLAASAEPAVKDSDTAVVEKEITVVEKEKE 452

Query: 144 ---GHKNENESGGHKRKLDESGSPA 79
                K E +  GHKRKLD S   A
Sbjct: 453 KKKKGKGEEDGEGHKRKLDGSSDSA 477


>ref|XP_006491562.1| PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Citrus
           sinensis]
          Length = 602

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 39/67 (58%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKLD 97
           LDKHGK NEKTP EW RNVV P GGD++VA  AAA+E ++A       +  +G  KRKLD
Sbjct: 411 LDKHGKLNEKTPQEWARNVVLPPGGDSVVASLAAAAEQTVA------EKETAGVKKRKLD 464

Query: 96  ESG-SPA 79
            SG SPA
Sbjct: 465 ASGDSPA 471


>gb|EMS59226.1| H/ACA ribonucleoprotein complex subunit 4 [Triticum urartu]
          Length = 519

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 38/73 (52%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEP---SMAVDDGHKNENESGGHKR 106
           LDKHGK  EKTP EWLRNVV PTGGDAM+A  AAA EP    +   D   +E      +R
Sbjct: 326 LDKHGKPTEKTPAEWLRNVVLPTGGDAMIASLAAAPEPEKVKVEQQDVVPSEEVKEKKRR 385

Query: 105 KLDESGSPAPIPS 67
           K DE    A  P+
Sbjct: 386 KTDEDDVTASTPA 398


>ref|NP_001060391.1| Os07g0636000 [Oryza sativa Japonica Group]
           gi|23237811|dbj|BAC16386.1| putative
           centromere/microtubule binding protein [Oryza sativa
           Japonica Group] gi|113611927|dbj|BAF22305.1|
           Os07g0636000 [Oryza sativa Japonica Group]
           gi|125559298|gb|EAZ04834.1| hypothetical protein
           OsI_27012 [Oryza sativa Indica Group]
           gi|125601221|gb|EAZ40797.1| hypothetical protein
           OsJ_25275 [Oryza sativa Japonica Group]
           gi|215734843|dbj|BAG95565.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 600

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 18/87 (20%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPS--------MAVDD-------- 145
           LDKHGK NEKTP EW+RNV  PTGGDAM+A  AAA E +        +A ++        
Sbjct: 412 LDKHGKPNEKTPAEWIRNVALPTGGDAMIASIAAAPEEAKVKAEQDVVATEEVKEKKKKK 471

Query: 144 GHKNENESG--GHKRKLDESGSPAPIP 70
            HK+E ++   G KRK+++  + A +P
Sbjct: 472 KHKDEEDAADEGRKRKIEDDDASASVP 498


>ref|XP_002878134.1| hypothetical protein ARALYDRAFT_486159 [Arabidopsis lyrata subsp.
           lyrata] gi|297323972|gb|EFH54393.1| hypothetical protein
           ARALYDRAFT_486159 [Arabidopsis lyrata subsp. lyrata]
          Length = 561

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 40/71 (56%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
 Frame = -2

Query: 276 LDKHGKRNEKTPVEWLRNVVFPTGGDAMVAEHAAASEPSMAVDDGHKNENESGGHKRKL- 100
           LDKHGK NEKTPVEW RNVV PTGGDA++A  AAA      V+   + EN   G  RK  
Sbjct: 389 LDKHGKPNEKTPVEWSRNVVLPTGGDAIIAGAAAA-----PVEIKAEAENGEAGEVRKRK 443

Query: 99  --DESGSPAPI 73
             D S SPAP+
Sbjct: 444 HDDSSDSPAPV 454