BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00017562
         (420 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308572.2| hypothetical protein POPTR_0006s24730g [Popu...    82   8e-14
ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containi...    80   3e-13
ref|XP_002528862.1| pentatricopeptide repeat-containing protein,...    73   4e-11
ref|XP_004308290.1| PREDICTED: pentatricopeptide repeat-containi...    65   1e-08
ref|XP_006603121.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-06
ref|XP_004500336.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-06

>ref|XP_002308572.2| hypothetical protein POPTR_0006s24730g [Populus trichocarpa]
           gi|550337026|gb|EEE92095.2| hypothetical protein
           POPTR_0006s24730g [Populus trichocarpa]
          Length = 602

 Score = 82.0 bits (201), Expect = 8e-14
 Identities = 40/82 (48%), Positives = 57/82 (69%)
 Frame = +2

Query: 158 QIKQVHARITVTGLANNGTILGHLIXXXXXXXXXXXXXHYSDSIFKCIKHPNIFATNNMI 337
           Q KQ HARI V+GLA   +++GH++              YS SI++ IK+PN+FA+NNMI
Sbjct: 12  QTKQAHARIIVSGLAGKASLMGHILSFLATFPSSPFD--YSLSIYRTIKNPNVFASNNMI 69

Query: 338 RCFAKNDSPRNSLLLYSTILQS 403
           RCFAK+D P  SL+LYS++L++
Sbjct: 70  RCFAKSDLPLQSLVLYSSVLRN 91


>ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
           gi|449479547|ref|XP_004155632.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 42/82 (51%), Positives = 51/82 (62%)
 Frame = +2

Query: 158 QIKQVHARITVTGLANNGTILGHLIXXXXXXXXXXXXXHYSDSIFKCIKHPNIFATNNMI 337
           QIKQ HARI V GLAN+G I  HL+              Y+ SI+  I HP +FATNNMI
Sbjct: 46  QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSD-YALSIYNSISHPTVFATNNMI 104

Query: 338 RCFAKNDSPRNSLLLYSTILQS 403
           RCF K D PR+S+ LYS + +S
Sbjct: 105 RCFVKGDLPRHSISLYSHMCRS 126


>ref|XP_002528862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531713|gb|EEF33536.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 374

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 32/80 (40%), Positives = 55/80 (68%)
 Frame = +2

Query: 161 IKQVHARITVTGLANNGTILGHLIXXXXXXXXXXXXXHYSDSIFKCIKHPNIFATNNMIR 340
           IKQ+HA+  ++G   + ++LGHL+             HYS S+++ IK+P++FA+NNMIR
Sbjct: 39  IKQIHAQFIISGFTGHASLLGHLLSLLALSPENQF--HYSYSVYQSIKNPSVFASNNMIR 96

Query: 341 CFAKNDSPRNSLLLYSTILQ 400
           CF+K++ P  S++ YS++L+
Sbjct: 97  CFSKSELPLESVVFYSSMLR 116


>ref|XP_004308290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Fragaria vesca subsp. vesca]
          Length = 606

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 34/80 (42%), Positives = 48/80 (60%)
 Frame = +2

Query: 158 QIKQVHARITVTGLANNGTILGHLIXXXXXXXXXXXXXHYSDSIFKCIKHPNIFATNNMI 337
           Q KQ HA + V+GL  N  ++ HL+              YS S++  I  P +FA+NNMI
Sbjct: 15  QTKQAHAHMIVSGLTANTQLMAHLLCSLSLSSSPPFP--YSLSLYHSIPSPTVFASNNMI 72

Query: 338 RCFAKNDSPRNSLLLYSTIL 397
           RCF+ + SP +SLLLYS++L
Sbjct: 73  RCFSHSPSPPHSLLLYSSML 92


>ref|XP_006603121.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 294

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +2

Query: 158 QIKQVHARITVTGLANNGTILGHLIXXXXXXXXXXXXXHYSDSIFKCIKHPNIFATNNMI 337
           QIKQ HA + V+G  ++  I  HL+             HYS S+F  I  P +FA N++I
Sbjct: 30  QIKQTHAHVVVSG--HHARITAHLLSLLSLSSPVPFPLHYSLSLFNSIPFPTVFAFNSLI 87

Query: 338 RCFAKNDSPRN-SLLLYSTI 394
           RC AK +SP + SL LYS++
Sbjct: 88  RCHAKANSPPSLSLSLYSSM 107


>ref|XP_004500336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cicer arietinum]
          Length = 548

 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +2

Query: 155 HQIKQVHARITVTGLANNGTILGHLIXXXXXXXXXXXXXHYSDSIFKCIKHPNIFATNNM 334
           HQIKQ HAR+ V G + +  IL H++             +Y  SIF  I  P +FA N++
Sbjct: 39  HQIKQTHARLVVLGQSQSRLIL-HILSLLSLSSSPL---NYCLSIFNSISFPTVFAFNSI 94

Query: 335 IRCFAK-NDSPRNSLLLYS 388
           IRC AK N SP NSL LYS
Sbjct: 95  IRCHAKSNSSPSNSLSLYS 113