BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00017551
         (1157 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]     605   e-170
gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus...   605   e-170
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...   604   e-170
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...   601   e-169
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]     601   e-169
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...   600   e-169
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    599   e-169
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    598   e-168
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...   598   e-168
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]   598   e-168
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   595   e-167
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...   588   e-165
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   587   e-165
emb|CBI21038.3| unnamed protein product [Vitis vinifera]              587   e-165
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   587   e-165
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   586   e-165
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]       585   e-164
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...   581   e-163
ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma ca...   580   e-163
gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]   578   e-162

>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score =  605 bits (1560), Expect = e-170
 Identities = 292/384 (76%), Positives = 330/384 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K+DG RLSLR SM KF S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V DG
Sbjct: 624  GVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+  LD+ML ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  MLSS
Sbjct: 684  IFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R +QL DL  KARIFVPSGRWLMGCLDELG LE GQCFIQVS+PSLEN F KHGP+FS+
Sbjct: 744  IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSD 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++V+KG VVIAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM Y PAE K++ R VN+ DIIDFF+KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK E
Sbjct: 924  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSYKS KILGKLYR+ KD  D E
Sbjct: 984  FQSYKSKKILGKLYRQVKDVCDTE 1007


>gb|EYU20269.1| hypothetical protein MIMGU_mgv1a000386mg [Mimulus guttatus]
          Length = 1196

 Score =  605 bits (1559), Expect = e-170
 Identities = 287/381 (75%), Positives = 331/381 (86%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP + DGFRLSLR+SM KF S+H ++E+ SWTRFQPGFLNRQIITLLSAL V D 
Sbjct: 625  GVVACWPAQSDGFRLSLRKSMKKFDSNHTVLEICSWTRFQPGFLNRQIITLLSALEVGDE 684

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F RMQ+ M+ +L+QMLE+ D AF+++T SC ++GNTAA+MLSAGFKPQTE HL  ML+S
Sbjct: 685  IFWRMQETMISRLNQMLEDTDTAFDVLTSSCTDQGNTAAIMLSAGFKPQTEPHLRGMLTS 744

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +RVAQL DL  +ARIFVPSGRWLMGCLDELGVLE+GQCFIQVS PSLE+ F KHG EFS 
Sbjct: 745  IRVAQLGDLRERARIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLEDCFVKHGSEFSG 804

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + K + VIKG V IAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKGERPHT+EASGS
Sbjct: 805  AKKKLEVIKGLVAIAKNPCLHPGDVRILEAVDCPGLHHLYDCLVFPQKGERPHTNEASGS 864

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE L+PPSK+SW PM+YAP E K+L R V ++DII+FFTKNM +E LGA
Sbjct: 865  DLDGDLYFVTWDENLMPPSKRSWTPMEYAPGEVKQLPREVKHTDIIEFFTKNMVNESLGA 924

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHAD SEYGA+DEKC+KLAELAA AVDFPKTGK+VTMP  LKPK+YPDFMGK E
Sbjct: 925  ICNAHVVHADSSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPAELKPKLYPDFMGKDE 984

Query: 1083 FQSYKSNKILGKLYRKAKDAS 1145
            FQ+YKS+KILGKLYRK KD++
Sbjct: 985  FQTYKSSKILGKLYRKIKDSN 1005


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score =  604 bits (1558), Expect = e-170
 Identities = 296/385 (76%), Positives = 333/385 (86%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP + DG RLSLR SMNKF S+H I+E+ SWTRFQPGFLNRQIITLLSALNV D 
Sbjct: 624  GVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDA 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            VF +MQ+LMV KL+QML ++DVAF+++T SCAE+GN AA+MLSAGFKPQ E HL  ML+ 
Sbjct: 684  VFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTC 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            VR AQL  L  KARIFVPSGRWLMGCLDELGVLE GQCFIQVS   LEN F KHG +FSE
Sbjct: 744  VRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSE 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN++V+KGTVVIAKNPCLHPGDIRILEAVDAPGLHHL DCLVFPQKGERPH +EASGS
Sbjct: 804  TKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSK+SW+PMQY  AEAK+L R VN+ DI++FF KNMA+E+LGA
Sbjct: 864  DLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGA 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVV ADLSEYGA+DEKCL LAELAATAVDFPKTGK+V+MP  LKPK+YPDFMGK E
Sbjct: 924  ICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGED 1157
             QSYKS KILG+LYR+ KDA D +D
Sbjct: 984  HQSYKSKKILGRLYRQIKDAYDDDD 1008


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score =  601 bits (1550), Expect = e-169
 Identities = 291/384 (75%), Positives = 329/384 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K+DG  LSLR SM KF S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V DG
Sbjct: 624  GVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+  L++ML ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  MLSS
Sbjct: 684  IFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R +QL DL  KARIFVPSGRWLMGCLDELG LE GQCFIQVS+PSLEN F KHGP+FS+
Sbjct: 744  IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSD 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++V+KG VVIAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM Y PAE K+L R VN+ DIIDFF+KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK E
Sbjct: 924  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSYKS KILGKLYR+ KD  D E
Sbjct: 984  FQSYKSKKILGKLYRQVKDVCDTE 1007


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  601 bits (1550), Expect = e-169
 Identities = 291/384 (75%), Positives = 328/384 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K+DG RLSLR SM KF S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V DG
Sbjct: 624  GVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+  LD+ML ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  MLSS
Sbjct: 684  IFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R +QL DL  KARIFVPSGRWLMGCLDELG LE GQCFIQVS+PSLEN F KHGP+FS+
Sbjct: 744  IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSD 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++V+KG VVIAKNPCLHPGD+RILEAVD P L HL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM Y PAE K+L R VN+ DIIDFF+KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK E
Sbjct: 924  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSYKS KILGKLYR+ KD  D E
Sbjct: 984  FQSYKSKKILGKLYRQVKDVCDAE 1007


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score =  600 bits (1546), Expect = e-169
 Identities = 291/385 (75%), Positives = 330/385 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP   DG RLSLR SMNKF S+H  +E+ SWTRFQPGFLNRQIITLLS L+V D 
Sbjct: 624  GVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDE 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F +MQ +MV KL+QM  +ADVAF++VT SCAE+GNTAA+MLSAGF P+TE HL  ML+ 
Sbjct: 684  IFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTC 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R AQL  L  K RIFVPSGRWLMGCLDELGVLE+GQCFIQVS PSLE+ F KHG  FSE
Sbjct: 744  IRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSE 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            S K ++V+KGTVV+AKNPCLHPGDIRILEAVDAP LHHL DCLVFPQKG+RPHT+EASGS
Sbjct: 804  SKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSK+SWLPMQY  AEAK+L R VN+ DIIDFF KNM +E+LGA
Sbjct: 864  DLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGA 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSEYGA+DE C+KLAELAATAVDFPKTGKLVTMPP LKPK+YPDFMGK +
Sbjct: 924  ICNAHVVHADLSEYGALDENCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKED 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGED 1157
            +QSY SNKILG+LYR+ KD  + +D
Sbjct: 984  YQSYNSNKILGRLYRQVKDDYNDDD 1008


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  599 bits (1545), Expect = e-169
 Identities = 290/384 (75%), Positives = 328/384 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K+DG RLSLR SM KF S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V DG
Sbjct: 624  GVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+  LD+ML ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  MLSS
Sbjct: 684  IFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R +QL DL  KARIFVPSGRWLMGCLDELG LE GQCFIQVS+PSLEN F KHGP+FS+
Sbjct: 744  IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSD 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              +N++V+KG VVIAKNPCLHPGD+RILEAVD P L HL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM Y PAE K+L R VN+ DIIDFF+KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK E
Sbjct: 924  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSYKS KILGKLYR+ KD  D E
Sbjct: 984  FQSYKSKKILGKLYRQVKDVCDAE 1007


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score =  598 bits (1543), Expect = e-168
 Identities = 290/384 (75%), Positives = 327/384 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K+DG  LSLR SM KF S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V DG
Sbjct: 624  GVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+  LD+ML ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  MLSS
Sbjct: 684  IFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R +QL DL  KARIFVPSGRWLMGCLDELG LE GQCFIQVS+PSLEN F KHGP+FS+
Sbjct: 744  IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSD 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++V+KG VVIAKNPCLHPGD+RILEAVD P L HL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM Y PAE K+L R VN+ DIIDFF+KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK E
Sbjct: 924  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSYKS KILGKLYR+ KD  D E
Sbjct: 984  FQSYKSKKILGKLYRQVKDVCDAE 1007


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score =  598 bits (1542), Expect = e-168
 Identities = 290/382 (75%), Positives = 326/382 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WPGK DG RLSLR SMNKF S+H  +E+ SWTRFQPGFLNRQIITLLS LNV D 
Sbjct: 627  GVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDA 686

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            VF +MQ+ MV KL+QM  N+DVAF+++T SCA++GN AA+MLSAGFKP  E HL  ML+ 
Sbjct: 687  VFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTC 746

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            VR AQL DL  K RIFVPSGRWLMGCLDELG+LE GQCFIQVS  SLE  F KHG +FSE
Sbjct: 747  VRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSE 806

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN++VIKGTVVIAKNPCLHPGD+R+LEAVD PGLHHL DCLVFPQKGERPHT+EASGS
Sbjct: 807  AEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGS 866

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSK+SW+PMQY  AEAK L R VN+ DII+FF KNM +++LGA
Sbjct: 867  DLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGA 926

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSEYGA D+ CL LAELAATAVDFPKTGK+V+MPP LKPKMYPDFMGK E
Sbjct: 927  ICNAHVVHADLSEYGATDKNCLTLAELAATAVDFPKTGKVVSMPPYLKPKMYPDFMGKEE 986

Query: 1083 FQSYKSNKILGKLYRKAKDASD 1148
            +QSYKS KILG+LYR+ KDA D
Sbjct: 987  YQSYKSEKILGRLYRQIKDAYD 1008


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score =  598 bits (1541), Expect = e-168
 Identities = 289/384 (75%), Positives = 327/384 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K+DG RLSLR SM KF S+H I+E+ SWTRFQPGFLNRQI+TLLS+L+V DG
Sbjct: 624  GVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDG 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+  LD+ML ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  MLSS
Sbjct: 684  IFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R +QL DL  KARIFVPSGRWLMGCLDELG LE GQCFIQVS+PSLEN F KHG +FS+
Sbjct: 744  IRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSD 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++V+KG VVIAKNPCLHPGD+RILEAVD P L HL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE +IPPSKKSW+PM Y PAE K+L R VN+ DIIDFF+KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK E
Sbjct: 924  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSYKS KILGKLYR+ KD  D E
Sbjct: 984  FQSYKSKKILGKLYRQVKDVCDAE 1007


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score =  595 bits (1534), Expect = e-167
 Identities = 287/382 (75%), Positives = 323/382 (84%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP   DGFRLSLRRSMNKF S H  +E+ SWTR QPGFLNRQIITLLSALNV D 
Sbjct: 624  GVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDE 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ+ MV KL QML + DVAF+++T SCAE+GN+AA+MLSAGFKPQTE HL  ML+ 
Sbjct: 684  IFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTC 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            ++ AQL  L  K RIFVPSGRWLMGCLDELGVLE GQCF+QVSTPSLEN F+KHG  F +
Sbjct: 744  IQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQ 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN++VIKG VV+AKNPCLHPGDIRILEAVDAPGLHHL DCLVFPQKG RPHTDEASGS
Sbjct: 804  TDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPP KKSW PM+Y PAEAK   R+V + D+I+FF +NM +E+LGA
Sbjct: 864  DLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVRNMVNENLGA 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVH+D SEYGA DE CLKLAELAA AVDFPKTGK+VTMPP LKPK+YPDFMGK +
Sbjct: 924  ICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFPKTGKIVTMPPHLKPKLYPDFMGKQD 983

Query: 1083 FQSYKSNKILGKLYRKAKDASD 1148
            +QSYKSNKILG+LYRK  DA D
Sbjct: 984  YQSYKSNKILGRLYRKICDAYD 1005


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score =  588 bits (1517), Expect = e-165
 Identities = 288/384 (75%), Positives = 323/384 (84%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP + DG RLSLR SM KF S+H I+E+ SWTR QPGFLNRQIITLLS+L V D 
Sbjct: 624  GVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDE 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+ KLD++L ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  ML+S
Sbjct: 684  MFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLAS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R AQL DL  K R+FV SGRWLMGCLDELG LE GQCFIQVS+PSLE  F KHGPEFSE
Sbjct: 744  IRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSE 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++V+KG VVIAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKG+RPH++EASGS
Sbjct: 804  IKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM YAPAEAK+L R V ++DIIDFF KNM  E LG 
Sbjct: 864  DLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGE 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GAMDEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK  
Sbjct: 924  ICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEP 983

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQSY+S KILGKLYR+  D  D E
Sbjct: 984  FQSYESKKILGKLYRQVIDVYDAE 1007


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  587 bits (1513), Expect = e-165
 Identities = 285/382 (74%), Positives = 324/382 (84%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+ASWP K DG RLSLR SMNKF S+HNI+E+ +WTRFQPGFLNRQIITLLSAL V D 
Sbjct: 624  GVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDE 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F +MQ+ M+ KL+QML +AD+AF+++T SCAE GN AA+MLS GF P TE HL  ML+S
Sbjct: 684  IFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
             R AQL  L  K+RIFV SGRWLMG LDELGVLE GQCF+QVSTPSLEN FSKHG  FSE
Sbjct: 744  TRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSE 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN+ V+KG VVIAKNPCLHPGD+R+LEAVDAP LHHL DCLVFPQKG+RPHT+EASGS
Sbjct: 804  T-KNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGS 862

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSK+SW+PM+YAP E+K L R V   DII+FF +NM +EHLGA
Sbjct: 863  DLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLLTRQVMTRDIIEFFVRNMVNEHLGA 922

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHAD S+YGA+DEKC+ LAELAATAVDFPKTGKLVTMPP LKPK+YPDFMGK  
Sbjct: 923  ICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKER 982

Query: 1083 FQSYKSNKILGKLYRKAKDASD 1148
             QSY+SNKILG+LYR  KDA D
Sbjct: 983  HQSYRSNKILGRLYRHIKDAYD 1004


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  587 bits (1512), Expect = e-165
 Identities = 286/380 (75%), Positives = 324/380 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP  +DG RLS R SMNKF+S H I+E+ SWTRFQPGFLNRQI+TLLSALNV D 
Sbjct: 462  GVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDK 521

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F +MQ+ M+ KL+QML + DVAF+++  SCAE+GNTAA+MLSAGFKPQTE HL  ML+ 
Sbjct: 522  IFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTC 581

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R AQ   L  KARIFVPSGRWLMGCLDELGVLE GQCFIQVS+PSLEN F KHG  FS 
Sbjct: 582  IRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFS- 640

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN++VIKG V IAKNPCLHPGD+RILEAVDAPGL HL DCLVFPQKG+RPH++EASGS
Sbjct: 641  AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGS 700

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTW+E LIPPSK+SW PMQY  AEAK L R V + DIIDFFTKNM +E+LGA
Sbjct: 701  DLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGA 760

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHAD SEYGA+DE CL LAE AATAVDFPKTGKLVT+PP LKPKMYPDFMGK E
Sbjct: 761  ICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEE 820

Query: 1083 FQSYKSNKILGKLYRKAKDA 1142
            FQ+Y+SNKILGK+YR+ KDA
Sbjct: 821  FQTYRSNKILGKMYRQIKDA 840


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  587 bits (1512), Expect = e-165
 Identities = 286/380 (75%), Positives = 324/380 (85%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP  +DG RLS R SMNKF+S H I+E+ SWTRFQPGFLNRQI+TLLSALNV D 
Sbjct: 624  GVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDK 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F +MQ+ M+ KL+QML + DVAF+++  SCAE+GNTAA+MLSAGFKPQTE HL  ML+ 
Sbjct: 684  IFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTC 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R AQ   L  KARIFVPSGRWLMGCLDELGVLE GQCFIQVS+PSLEN F KHG  FS 
Sbjct: 744  IRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFS- 802

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN++VIKG V IAKNPCLHPGD+RILEAVDAPGL HL DCLVFPQKG+RPH++EASGS
Sbjct: 803  AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGS 862

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTW+E LIPPSK+SW PMQY  AEAK L R V + DIIDFFTKNM +E+LGA
Sbjct: 863  DLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGA 922

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHAD SEYGA+DE CL LAE AATAVDFPKTGKLVT+PP LKPKMYPDFMGK E
Sbjct: 923  ICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEE 982

Query: 1083 FQSYKSNKILGKLYRKAKDA 1142
            FQ+Y+SNKILGK+YR+ KDA
Sbjct: 983  FQTYRSNKILGKMYRQIKDA 1002


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score =  586 bits (1511), Expect = e-165
 Identities = 286/384 (74%), Positives = 324/384 (84%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP + DG RLSLR SM KF S+H I+E+ SWTR QPGFLNRQIITLLS+L V D 
Sbjct: 625  GVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDE 684

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F  MQ  M+ KLD++L ++DVAF+++T SCAE GNTAA+MLSAGFKPQ+E HL  ML+S
Sbjct: 685  MFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLAS 744

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R AQL DL  K R+FVPSGRWLMGCLDEL  LE GQCFIQVS+PSLE  F KHGP+FSE
Sbjct: 745  IRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQGQCFIQVSSPSLETCFVKHGPKFSE 804

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
              KN++VIKG VVIAKNPCLHPGD+RILEAVD PGLHHL DCLVFPQKG+RPH++EASGS
Sbjct: 805  IKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGS 864

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW+PM YAPAEAK+L R V ++DIIDFF+KNM  E LG 
Sbjct: 865  DLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQLGRQVQHTDIIDFFSKNMVQESLGE 924

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSE+GA+DEKCLKLAELAA AVDFPKTGKLVTMP  LKPKMYPDFMGK  
Sbjct: 925  ICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKTGKLVTMPFDLKPKMYPDFMGKEP 984

Query: 1083 FQSYKSNKILGKLYRKAKDASDGE 1154
            FQ+Y+S KILGKLYR+  D  D E
Sbjct: 985  FQTYESKKILGKLYRQVIDVYDAE 1008


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score =  585 bits (1507), Expect = e-164
 Identities = 284/379 (74%), Positives = 318/379 (83%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP K DG RLSLRRSMNKF S H I+E+ SWTRFQPGFLNRQI+TLLS LNV D 
Sbjct: 620  GVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICSWTRFQPGFLNRQIVTLLSTLNVRDE 679

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            +F +MQ+ M+ KL+QML +ADVAF ++T SC E+GN  A+MLSAGFKPQ+E HL  ML+ 
Sbjct: 680  IFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQGNVGAIMLSAGFKPQSEPHLQGMLTC 739

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +R AQL  L  KARIFVP GRWLMGCLDELGVLE GQCFIQVSTPSLEN FSKHG  FSE
Sbjct: 740  IRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQGQCFIQVSTPSLENCFSKHGSRFSE 799

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            +  N+ VIKG VVIAKNPCLHPGDIRILEAVD PGLHHL DCLVFPQKG+RPH +EASGS
Sbjct: 800  TKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPGLHHLYDCLVFPQKGDRPHANEASGS 859

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSKKSW PMQY PA+ + L R V   DIIDFF++NM +E LGA
Sbjct: 860  DLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRTLPRDVTQKDIIDFFSRNMVNESLGA 919

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLS+YGA+DEKCL LAELAA AVDFPKTG +VTMP  LKPK+YPDFMGK E
Sbjct: 920  ICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFPKTGIIVTMPAHLKPKIYPDFMGKEE 979

Query: 1083 FQSYKSNKILGKLYRKAKD 1139
            +QSYKS KI+G+LYR+ KD
Sbjct: 980  YQSYKSTKIMGRLYRQIKD 998


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score =  581 bits (1498), Expect = e-163
 Identities = 282/382 (73%), Positives = 322/382 (84%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+ASWP K DG RLSLR SMNKF S+HNI+E+ +WTRFQPGFLNRQIITLLSAL V D 
Sbjct: 624  GVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICAWTRFQPGFLNRQIITLLSALGVPDE 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            VF +MQ+ M+ KL+QML +AD+AF+++T SCAE GN AA+MLS GF P TE HL  ML+S
Sbjct: 684  VFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHGNAAAIMLSCGFSPLTEPHLRGMLTS 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
             R AQL  L  K+RIFV SGRWLMG LDE GVLE GQCF+QVSTPSLEN FSKHG  FSE
Sbjct: 744  TRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQGQCFVQVSTPSLENCFSKHGSRFSE 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN+ V+KG V+IAKNPCLHPGD+R+LEAVDAP LHHL DCLVFPQKG+RPHT+EASGS
Sbjct: 804  T-KNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPDLHHLNDCLVFPQKGDRPHTNEASGS 862

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWDE LIPPSK+SW+PM+YAP E+K   R V   DII+FF +NM +EHLGA
Sbjct: 863  DLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLKTRQVMTRDIIEFFVRNMVNEHLGA 922

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHAD S+YGA+DEKC+ LAELAATAVDFPKTGKLVTMPP LKPK+YPDFMGK  
Sbjct: 923  ICNAHVVHADSSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKER 982

Query: 1083 FQSYKSNKILGKLYRKAKDASD 1148
             QSY+S KILG+LYR+ KDA D
Sbjct: 983  HQSYRSKKILGRLYRRIKDAYD 1004


>ref|XP_007011871.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
            gi|508782234|gb|EOY29490.1| RNA-dependent RNA polymerase
            6 [Theobroma cacao]
          Length = 1197

 Score =  580 bits (1495), Expect = e-163
 Identities = 283/382 (74%), Positives = 318/382 (83%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP + DG RLSLR SMNKF S H  +E+ SWTRFQPGFLNRQIITLLS   V D 
Sbjct: 624  GVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICSWTRFQPGFLNRQIITLLSTQYVPDE 683

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
            VF  MQ+ MV KL+++L + DVAFE++T SC+E+GN AA+MLSAGFKPQTE HL  +L+ 
Sbjct: 684  VFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQGNAAAIMLSAGFKPQTEPHLRGILTC 743

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            VR +QL  L  KARIFVPSGRWLMG LDELGVLE GQCFIQVS PS+EN F KHG  F+E
Sbjct: 744  VRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQGQCFIQVSNPSVENCFLKHGSRFAE 803

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + KN  VI+G VVIAKNPCLHPGDIRILEAVDAPGLHHL DCLVFPQKGERPHT+EASGS
Sbjct: 804  TKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGS 863

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTW++ LIPP KKSW PMQY P E K++QR VN+ DIIDFF KNM +EHLG 
Sbjct: 864  DLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKEIQREVNHKDIIDFFAKNMVNEHLGT 923

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSEYGA+DEKC+ LAELAATAVDFPKTGK+V+MP  LKPK+YPDFMGK E
Sbjct: 924  ICNAHVVHADLSEYGALDEKCIHLAELAATAVDFPKTGKIVSMPANLKPKLYPDFMGKEE 983

Query: 1083 FQSYKSNKILGKLYRKAKDASD 1148
            +QSYKS KILG+LYR  KD  D
Sbjct: 984  YQSYKSRKILGRLYRHIKDVYD 1005


>gb|AHL27586.1| RNA-dependent RNA polymerase 3 [Salvia miltiorrhiza]
          Length = 1195

 Score =  578 bits (1489), Expect = e-162
 Identities = 277/380 (72%), Positives = 320/380 (84%)
 Frame = +3

Query: 3    GVIASWPGKDDGFRLSLRRSMNKFISSHNIVEVVSWTRFQPGFLNRQIITLLSALNVSDG 182
            GV+A WP +++G RL LR SM KF S H  +E+ SWTRFQPGFLNRQI+TLLS+L V D 
Sbjct: 623  GVVACWPAENNGHRLQLRPSMKKFDSDHTTLEICSWTRFQPGFLNRQIVTLLSSLEVCDE 682

Query: 183  VFSRMQDLMVCKLDQMLENADVAFEIVTLSCAEEGNTAAMMLSAGFKPQTELHLGRMLSS 362
             F RMQ+LM+ +LD +LE+ D+AF+++T SC+++GNTAAMML+AGF+  TE HL  ML S
Sbjct: 683  NFWRMQELMIARLDGILEDPDMAFDVLTASCSDQGNTAAMMLAAGFRSHTEPHLRGMLMS 742

Query: 363  VRVAQLSDLLAKARIFVPSGRWLMGCLDELGVLEYGQCFIQVSTPSLENRFSKHGPEFSE 542
            +RV+QL DL  K+RIFV SGRWLMGCLDELGVLEYGQCFIQVS PSLE+ F+ HG EFSE
Sbjct: 743  IRVSQLGDLREKSRIFVHSGRWLMGCLDELGVLEYGQCFIQVSKPSLEDCFANHGSEFSE 802

Query: 543  SMKNVRVIKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLGDCLVFPQKGERPHTDEASGS 722
            + K++ VIKG VVIAKNPCLHPGD+RILEAVD  GLHHL DCLVFPQKGERPH +EASGS
Sbjct: 803  TKKDLEVIKGLVVIAKNPCLHPGDVRILEAVDVRGLHHLYDCLVFPQKGERPHANEASGS 862

Query: 723  DLDGDLYFVTWDEELIPPSKKSWLPMQYAPAEAKKLQRAVNNSDIIDFFTKNMASEHLGA 902
            DLDGDLYFVTWD+ LIPPSK+SWLPM Y P E K   R V +SDII+FFTKNM +E LG 
Sbjct: 863  DLDGDLYFVTWDDTLIPPSKRSWLPMDYEPGEVKLKPREVTHSDIIEFFTKNMVNESLGT 922

Query: 903  ICNAHVVHADLSEYGAMDEKCLKLAELAATAVDFPKTGKLVTMPPALKPKMYPDFMGKPE 1082
            ICNAHVVHADLSEYGA+DEKC+KLAELAA AVDFPKTGK+VTMPP LKP+MYPDFMGK E
Sbjct: 923  ICNAHVVHADLSEYGALDEKCIKLAELAAIAVDFPKTGKIVTMPPDLKPQMYPDFMGKEE 982

Query: 1083 FQSYKSNKILGKLYRKAKDA 1142
             QSYKS KILGKLYR+ +DA
Sbjct: 983  LQSYKSTKILGKLYRRVRDA 1002