BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00016899
         (628 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325518.2| pentatricopeptide repeat-containing family p...   192   5e-47
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi...   191   1e-46
ref|XP_004507080.1| PREDICTED: pentatricopeptide repeat-containi...   191   2e-46
ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi...   189   6e-46
ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containi...   189   6e-46
ref|XP_006478380.1| PREDICTED: pentatricopeptide repeat-containi...   189   8e-46
gb|EXC35649.1| hypothetical protein L484_001633 [Morus notabilis]     187   2e-45
ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containi...   187   2e-45
ref|XP_003604235.1| Pentatricopeptide repeat-containing protein ...   186   6e-45
ref|XP_002528030.1| pentatricopeptide repeat-containing protein,...   186   6e-45
ref|XP_002888838.1| pentatricopeptide repeat-containing protein ...   182   5e-44
ref|XP_007139658.1| hypothetical protein PHAVU_008G048400g [Phas...   182   9e-44
ref|XP_007032385.1| Pentatricopeptide repeat (PPR-like) superfam...   181   1e-43
ref|XP_006390769.1| hypothetical protein EUTSA_v10019712mg [Eutr...   180   3e-43
ref|XP_006301077.1| hypothetical protein CARUB_v10021470mg [Caps...   180   3e-43
ref|NP_177302.1| pentatricopeptide repeat-containing protein [Ar...   176   5e-42
ref|XP_004243456.1| PREDICTED: pentatricopeptide repeat-containi...   164   2e-38
ref|XP_004308527.1| PREDICTED: pentatricopeptide repeat-containi...   163   3e-38
ref|XP_007019860.1| Pentatricopeptide repeat (PPR-like) superfam...   144   2e-32
ref|XP_007019854.1| Pentatricopeptide repeat (PPR-like) superfam...   140   4e-31

>ref|XP_002325518.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550317217|gb|EEE99899.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 678

 Score =  192 bits (489), Expect = 5e-47
 Identities = 91/168 (54%), Positives = 126/168 (75%)
 Frame = -1

Query: 505 PKFPIQIHKTPSSLLQIQQHPNNKFLKQFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYK 326
           P+ P+ I+ T     +I+     + ++     K H++F + DAFP SLPLH KNP +IYK
Sbjct: 14  PQNPLNINITHRQFSKIKSSTQTQPVQTQNPNKKHQQFDERDAFPASLPLHKKNPQAIYK 73

Query: 325 DIQRFARQDKLKEALTILDYLDKQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININS 146
           DIQRF+R+++LK+AL I+DY+D+QGIPVNPTTFS+LIAACIR+KSL+  + +HTH+ IN 
Sbjct: 74  DIQRFSRKNQLKDALIIMDYMDQQGIPVNPTTFSALIAACIRSKSLTKAKEIHTHLRING 133

Query: 145 LQNNEFLLAKLVHMYTSCGAIEEAEKLFDGGGFSAGTRSSVYPWNSLM 2
           LQNNEFL  KLVHMYTSCG+IE+A+ +FD       + ++VYPWN+L+
Sbjct: 134 LQNNEFLRTKLVHMYTSCGSIEDAKSVFD----ECTSTATVYPWNALI 177


>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Vitis vinifera]
          Length = 725

 Score =  191 bits (486), Expect = 1e-46
 Identities = 98/172 (56%), Positives = 122/172 (70%), Gaps = 3/172 (1%)
 Frame = -1

Query: 508 PPKFPIQIHKTPSSLLQIQQHPNNKFLKQFPS--KKPHKK-FSQEDAFPQSLPLHSKNPS 338
           P   P+Q     +     Q  P+     QF +  K P KK FS++DAFP SLPLH+KNP 
Sbjct: 58  PISLPLQSKNPHAIYSDNQTTPSRPTQTQFRTRLKSPKKKPFSEKDAFPMSLPLHTKNPH 117

Query: 337 SIYKDIQRFARQDKLKEALTILDYLDKQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHI 158
           +I+ DIQRFARQ KLKEALTILDY D+QGIPVNPTTFSSL+ AC+ +KSL+HG+ +H HI
Sbjct: 118 AIFSDIQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVHI 177

Query: 157 NINSLQNNEFLLAKLVHMYTSCGAIEEAEKLFDGGGFSAGTRSSVYPWNSLM 2
            IN L+NNEFL  KLVHMYTSCG++E+A  +FDG      +  SVY WN+L+
Sbjct: 178 RINGLENNEFLRTKLVHMYTSCGSLEDARGVFDG-----VSSKSVYTWNALL 224


>ref|XP_004507080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cicer arietinum]
          Length = 694

 Score =  191 bits (485), Expect = 2e-46
 Identities = 105/169 (62%), Positives = 118/169 (69%)
 Frame = -1

Query: 508 PPKFPIQIHKTPSSLLQIQQHPNNKFLKQFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIY 329
           PP      HK  S       + N        S+KP   F +EDAFP SLPLH+KNP  IY
Sbjct: 34  PPSITTTTHKKKSPKFTTTTNKNKNI-----SEKP---FLEEDAFPCSLPLHNKNPLFIY 85

Query: 328 KDIQRFARQDKLKEALTILDYLDKQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININ 149
           KDI+ FARQ+KLKEALTILDY+D+QGIPVN TTFSSLIAACIRT SLS GR VHTHI IN
Sbjct: 86  KDIKNFARQNKLKEALTILDYVDQQGIPVNATTFSSLIAACIRTNSLSIGRQVHTHIRIN 145

Query: 148 SLQNNEFLLAKLVHMYTSCGAIEEAEKLFDGGGFSAGTRSSVYPWNSLM 2
            LQNN FL  KLV MYTSCG+ E+A KLFD    S  + SSVYPWN+L+
Sbjct: 146 GLQNNLFLKTKLVQMYTSCGSFEDAVKLFDE---SFQSESSVYPWNALL 191


>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 716

 Score =  189 bits (480), Expect = 6e-46
 Identities = 87/145 (60%), Positives = 118/145 (81%)
 Frame = -1

Query: 436 KFLKQFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDK 257
           K + +F ++K    F+++DAFP SLPLH+KNP +IY+D+QRFARQ+KLKEALTI+DY+D+
Sbjct: 49  KIVSKFRNRK-RPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFARQNKLKEALTIMDYVDQ 107

Query: 256 QGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEE 77
           QGIPVN TTFSSLI AC+RTKS+++ + +H HI IN L+NNEF+  +LVHMYT+CG++EE
Sbjct: 108 QGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEE 167

Query: 76  AEKLFDGGGFSAGTRSSVYPWNSLM 2
           A+KLFD       +  SVYPWN+L+
Sbjct: 168 AQKLFD-----ESSSKSVYPWNALL 187


>ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 696

 Score =  189 bits (480), Expect = 6e-46
 Identities = 87/145 (60%), Positives = 118/145 (81%)
 Frame = -1

Query: 436 KFLKQFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDK 257
           K + +F ++K    F+++DAFP SLPLH+KNP +IY+D+QRFARQ+KLKEALTI+DY+D+
Sbjct: 49  KIVSKFRNRK-RPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFARQNKLKEALTIMDYVDQ 107

Query: 256 QGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEE 77
           QGIPVN TTFSSLI AC+RTKS+++ + +H HI IN L+NNEF+  +LVHMYT+CG++EE
Sbjct: 108 QGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEFIRTRLVHMYTACGSLEE 167

Query: 76  AEKLFDGGGFSAGTRSSVYPWNSLM 2
           A+KLFD       +  SVYPWN+L+
Sbjct: 168 AQKLFD-----ESSSKSVYPWNALL 187


>ref|XP_006478380.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Citrus sinensis]
          Length = 681

 Score =  189 bits (479), Expect = 8e-46
 Identities = 92/142 (64%), Positives = 112/142 (78%), Gaps = 2/142 (1%)
 Frame = -1

Query: 421 FPSKKPH--KKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGI 248
           F  +K H  KK +++DAFP SLPLH KNP +IYKDIQRFARQ+KLKEAL ILDY+D+QGI
Sbjct: 44  FQKRKKHHTKKSAEKDAFPSSLPLHEKNPRAIYKDIQRFARQNKLKEALVILDYMDQQGI 103

Query: 247 PVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEK 68
           PVN TTF++LI AC+RT+SL  GRL+HTHI IN L+NN FL  KLV MYTSCG+ E+AEK
Sbjct: 104 PVNVTTFNALITACVRTRSLVEGRLIHTHIRINGLENNGFLRTKLVKMYTSCGSFEDAEK 163

Query: 67  LFDGGGFSAGTRSSVYPWNSLM 2
           +FD       +  SVYPWN+L+
Sbjct: 164 VFD-----ESSSESVYPWNALL 180


>gb|EXC35649.1| hypothetical protein L484_001633 [Morus notabilis]
          Length = 647

 Score =  187 bits (475), Expect = 2e-45
 Identities = 89/141 (63%), Positives = 111/141 (78%), Gaps = 2/141 (1%)
 Frame = -1

Query: 418 PSKKPHKK--FSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIP 245
           P K+  K+  F+++DAFP+SLPLHSKNP ++Y DIQRFARQ+KL +ALTILDY+D+QGIP
Sbjct: 11  PGKRRRKRPVFTKKDAFPESLPLHSKNPRAVYSDIQRFARQNKLSQALTILDYMDQQGIP 70

Query: 244 VNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKL 65
           VNPTTF++LIAAC+RTKSL HG+ VH  I IN L  NEFL  KLVHMYTSCG++++A  L
Sbjct: 71  VNPTTFAALIAACVRTKSLDHGKQVHAFIRINGLDKNEFLRTKLVHMYTSCGSVDDANNL 130

Query: 64  FDGGGFSAGTRSSVYPWNSLM 2
           FD          SVYPWN+L+
Sbjct: 131 FD-----ESPSRSVYPWNALL 146


>ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Glycine max]
          Length = 682

 Score =  187 bits (475), Expect = 2e-45
 Identities = 92/138 (66%), Positives = 114/138 (82%)
 Frame = -1

Query: 415 SKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVNP 236
           +KKP K F+++DAFP SLPLH+KNP  I+KDI+RFARQ+KLKEALTILDY+D++GIPV+ 
Sbjct: 55  TKKP-KPFTEKDAFPSSLPLHNKNPIFIFKDIKRFARQNKLKEALTILDYVDQRGIPVDA 113

Query: 235 TTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLFDG 56
           TTFSS++AACIR KSL  GR VHTHI IN L+NN FL  KLVHMYT+CG++E+A+KLFDG
Sbjct: 114 TTFSSVVAACIRAKSLPQGREVHTHIRINGLENNSFLRTKLVHMYTACGSLEDAQKLFDG 173

Query: 55  GGFSAGTRSSVYPWNSLM 2
                    SVYPWN+L+
Sbjct: 174 -----LPCESVYPWNALL 186


>ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355505290|gb|AES86432.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 688

 Score =  186 bits (471), Expect = 6e-45
 Identities = 97/148 (65%), Positives = 111/148 (75%)
 Frame = -1

Query: 445 PNNKFLKQFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDY 266
           PN    K    KKP   FS+EDAFP SLPLH+KNP SIYKDI+ FARQ+KL EAL ILDY
Sbjct: 45  PNKNNNKNNNVKKP---FSEEDAFPCSLPLHNKNPISIYKDIKNFARQNKLNEALAILDY 101

Query: 265 LDKQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGA 86
           +D+ GIPVN TTFSSLIAACIRT SLS G+ +HTHI IN L+ N FLL KLV MYTSCG+
Sbjct: 102 VDQNGIPVNATTFSSLIAACIRTNSLSIGKQIHTHIRINGLEKNTFLLTKLVQMYTSCGS 161

Query: 85  IEEAEKLFDGGGFSAGTRSSVYPWNSLM 2
           +E+A KLFD         SSVYPWN+L+
Sbjct: 162 LEDALKLFD----ELPDESSVYPWNALL 185


>ref|XP_002528030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532560|gb|EEF34348.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 456

 Score =  186 bits (471), Expect = 6e-45
 Identities = 87/146 (59%), Positives = 114/146 (78%)
 Frame = -1

Query: 439 NKFLKQFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLD 260
           N++L+    KK   +F ++DAFP SLPLH+KNPS++YKDIQRF RQ+KLKEAL I+DYL+
Sbjct: 48  NRYLRYHNIKKRKSRFREKDAFPSSLPLHTKNPSAVYKDIQRFTRQNKLKEALIIMDYLE 107

Query: 259 KQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIE 80
           +QGIPVN TTFS+LIAACIR+KSL H + +H HI IN L+NNEFL  KLV +YTSCG+ E
Sbjct: 108 QQGIPVNATTFSALIAACIRSKSLDHAKQIHAHIRINGLENNEFLRTKLVSLYTSCGSFE 167

Query: 79  EAEKLFDGGGFSAGTRSSVYPWNSLM 2
           +A+ +F        + +SVYPWN+L+
Sbjct: 168 DAKMVFG----ECTSSTSVYPWNALL 189


>ref|XP_002888838.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297334679|gb|EFH65097.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 688

 Score =  182 bits (463), Expect = 5e-44
 Identities = 86/139 (61%), Positives = 113/139 (81%)
 Frame = -1

Query: 418 PSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVN 239
           P+KKP K F + DAFP SLPLHSKNP SI++DIQRFAR++ L++ALTILDYL+++GIPVN
Sbjct: 51  PAKKP-KPFRERDAFPSSLPLHSKNPHSIHRDIQRFARKNNLEDALTILDYLEQRGIPVN 109

Query: 238 PTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLFD 59
            TTFS+L+AAC+R KSL HG+ VH HI IN L++NEF+  KLVHMYT+CG++ +A+K+FD
Sbjct: 110 ATTFSALLAACVRRKSLLHGKQVHVHIRINGLESNEFIRTKLVHMYTACGSVRDAQKVFD 169

Query: 58  GGGFSAGTRSSVYPWNSLM 2
                  T S+VY WN+L+
Sbjct: 170 -----ESTSSNVYSWNALL 183


>ref|XP_007139658.1| hypothetical protein PHAVU_008G048400g [Phaseolus vulgaris]
           gi|561012791|gb|ESW11652.1| hypothetical protein
           PHAVU_008G048400g [Phaseolus vulgaris]
          Length = 674

 Score =  182 bits (461), Expect = 9e-44
 Identities = 95/152 (62%), Positives = 115/152 (75%), Gaps = 3/152 (1%)
 Frame = -1

Query: 448 HPNNKFLKQFPSKKPHKK---FSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALT 278
           HP        P K+  KK   F+++DAFP SLPLH+KNP  IYKDI+RFARQ+KLKEALT
Sbjct: 32  HPRRPPRFTTPRKQRTKKVKPFTEKDAFPCSLPLHNKNPIFIYKDIKRFARQNKLKEALT 91

Query: 277 ILDYLDKQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYT 98
           ILDY+D++GIPV+ TTFS++IAACIRTKSL  GR VH HI IN L+NN FL  KLV MYT
Sbjct: 92  ILDYVDQRGIPVDSTTFSAVIAACIRTKSLPQGREVHIHIRINGLENNVFLRTKLVQMYT 151

Query: 97  SCGAIEEAEKLFDGGGFSAGTRSSVYPWNSLM 2
           SCG++EEA+KLF+G         SVYPWN+L+
Sbjct: 152 SCGSLEEAQKLFEG-----LPCESVYPWNALL 178


>ref|XP_007032385.1| Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma
           cacao] gi|508711414|gb|EOY03311.1| Pentatricopeptide
           repeat (PPR-like) superfamily protein [Theobroma cacao]
          Length = 683

 Score =  181 bits (460), Expect = 1e-43
 Identities = 86/140 (61%), Positives = 112/140 (80%)
 Frame = -1

Query: 421 FPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPV 242
           F  ++    F +++AFP SLPLH+KNP +IYKDIQRFARQ+KLKEAL ILDY+D+QGIPV
Sbjct: 48  FAHRRSPPPFFEKNAFPSSLPLHTKNPHAIYKDIQRFARQNKLKEALAILDYVDQQGIPV 107

Query: 241 NPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLF 62
           NPTTFSSL+AAC+R+KSL+ GR +H+HI  N L+NNEFL AKL HMYTSCG+I++A ++F
Sbjct: 108 NPTTFSSLLAACVRSKSLADGRQIHSHIRTNGLENNEFLRAKLAHMYTSCGSIDDALRVF 167

Query: 61  DGGGFSAGTRSSVYPWNSLM 2
           D       T  +V+ WN+L+
Sbjct: 168 D-----ECTSKNVHSWNALL 182


>ref|XP_006390769.1| hypothetical protein EUTSA_v10019712mg [Eutrema salsugineum]
           gi|557087203|gb|ESQ28055.1| hypothetical protein
           EUTSA_v10019712mg [Eutrema salsugineum]
          Length = 688

 Score =  180 bits (457), Expect = 3e-43
 Identities = 88/139 (63%), Positives = 112/139 (80%)
 Frame = -1

Query: 418 PSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVN 239
           P+K P K F + DAFP SLPLHSKNP  I++DIQ FARQ+KL++ALTILDYL+++GIPVN
Sbjct: 51  PAKNP-KPFRERDAFPSSLPLHSKNPYIIHRDIQNFARQNKLEDALTILDYLEQRGIPVN 109

Query: 238 PTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLFD 59
            TTFS+L+AAC+R KSLS G+ VH HI IN L+NNEFL  KLVHMYT+CG+I++A+K+FD
Sbjct: 110 ATTFSALLAACVRRKSLSLGKQVHVHIRINGLENNEFLGTKLVHMYTACGSIKDAQKVFD 169

Query: 58  GGGFSAGTRSSVYPWNSLM 2
                  T S+VY WN+L+
Sbjct: 170 -----ESTSSNVYSWNALL 183


>ref|XP_006301077.1| hypothetical protein CARUB_v10021470mg [Capsella rubella]
           gi|482569787|gb|EOA33975.1| hypothetical protein
           CARUB_v10021470mg [Capsella rubella]
          Length = 688

 Score =  180 bits (457), Expect = 3e-43
 Identities = 85/139 (61%), Positives = 113/139 (81%)
 Frame = -1

Query: 418 PSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVN 239
           P++KP K F + DAFP SLPLHSKNP SI++DIQ FAR++ L++ALTILDYL+++GIPVN
Sbjct: 51  PARKP-KPFRERDAFPSSLPLHSKNPCSIHRDIQSFARKNNLEDALTILDYLEQRGIPVN 109

Query: 238 PTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLFD 59
            TTFS+L+AAC+R KSL HG+ VH HI IN L++NEFL  KLVHMYT+CG++++A+K+FD
Sbjct: 110 ATTFSALLAACVRRKSLIHGKQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFD 169

Query: 58  GGGFSAGTRSSVYPWNSLM 2
                  T S+VY WN+L+
Sbjct: 170 -----ESTSSNVYSWNALL 183


>ref|NP_177302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75169718|sp|Q9C9I3.1|PP115_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g71460, chloroplastic; Flags: Precursor
           gi|12323723|gb|AAG51819.1|AC016163_8 unknown protein;
           45757-47826 [Arabidopsis thaliana]
           gi|332197082|gb|AEE35203.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  176 bits (446), Expect = 5e-42
 Identities = 85/139 (61%), Positives = 110/139 (79%)
 Frame = -1

Query: 418 PSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVN 239
           P+KKP K F + DAFP SLPLHSKNP  I++DIQ FARQ+ L+ ALTILDYL+++GIPVN
Sbjct: 52  PAKKP-KPFRERDAFPSSLPLHSKNPYIIHRDIQIFARQNNLEVALTILDYLEQRGIPVN 110

Query: 238 PTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLFD 59
            TTFS+L+ AC+R KSL HG+ VH HI IN L++NEFL  KLVHMYT+CG++++A+K+FD
Sbjct: 111 ATTFSALLEACVRRKSLLHGKQVHVHIRINGLESNEFLRTKLVHMYTACGSVKDAQKVFD 170

Query: 58  GGGFSAGTRSSVYPWNSLM 2
                  T S+VY WN+L+
Sbjct: 171 -----ESTSSNVYSWNALL 184


>ref|XP_004243456.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Solanum lycopersicum]
          Length = 674

 Score =  164 bits (416), Expect = 2e-38
 Identities = 80/136 (58%), Positives = 104/136 (76%)
 Frame = -1

Query: 409 KPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVNPTT 230
           K   K+ + +     L +H+KNP +IYKDIQRFA Q+KLKEALTILDYLD +GIPVNPTT
Sbjct: 43  KEPSKYPKHNNLRNLLSVHTKNPHAIYKDIQRFAHQNKLKEALTILDYLDHRGIPVNPTT 102

Query: 229 FSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTSCGAIEEAEKLFDGGG 50
           F+SLIAAC+R KSL+  ++VHTH+ IN L+NNEFL  K+V+MY +CG+IE+A+K+FD   
Sbjct: 103 FASLIAACVRLKSLTSAKIVHTHVIINGLENNEFLQTKVVNMYAACGSIEDAKKVFD--- 159

Query: 49  FSAGTRSSVYPWNSLM 2
                  SVYPWN+L+
Sbjct: 160 --KMPVRSVYPWNALL 173


>ref|XP_004308527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 683

 Score =  163 bits (413), Expect = 3e-38
 Identities = 82/151 (54%), Positives = 109/151 (72%), Gaps = 3/151 (1%)
 Frame = -1

Query: 445 PNNKFLKQFPSKKPHKK---FSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTI 275
           P+++        + H+K   F + DAFP+SLPLH+KNP ++YKDIQRFA Q+KL EALTI
Sbjct: 37  PHHRAFNLHALSRRHRKPPSFEERDAFPESLPLHTKNPRAVYKDIQRFAAQNKLNEALTI 96

Query: 274 LDYLDKQGIPVNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFLLAKLVHMYTS 95
           LDYLD+QGIPVN TTFS LI AC+RT+SL  G+ +H +I IN L+++EFL  KLV+MYTS
Sbjct: 97  LDYLDQQGIPVNATTFSHLITACVRTRSLDTGKKIHKYIWINGLESSEFLRQKLVNMYTS 156

Query: 94  CGAIEEAEKLFDGGGFSAGTRSSVYPWNSLM 2
            GA+++A  LFD          +VY WN+L+
Sbjct: 157 FGAVDDAHHLFD-----QMPGKNVYTWNALL 182


>ref|XP_007019860.1| Pentatricopeptide repeat (PPR-like) superfamily protein, putative
           [Theobroma cacao] gi|508725188|gb|EOY17085.1|
           Pentatricopeptide repeat (PPR-like) superfamily protein,
           putative [Theobroma cacao]
          Length = 431

 Score =  144 bits (363), Expect = 2e-32
 Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 16/154 (10%)
 Frame = -1

Query: 511 QPPKFPIQIHKTPSSLLQIQQHPNNKFLK------------QFPSKKPHKK----FSQED 380
           Q P   + +H +P + L  +   NN+F K            + P+K  H++    F ++ 
Sbjct: 5   QSPSLSLCLHSSPPNPLFYR---NNQFSKIKASARSPPKPQKDPTKFTHRRSPPPFFEKY 61

Query: 379 AFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIPVNPTTFSSLIAACIR 200
           AFP  LPLH+KNP +IYKDIQRFARQ+KLKEAL ILDY+++QGIPVNPTTFSSL+AAC+R
Sbjct: 62  AFPSPLPLHTKNPHAIYKDIQRFARQNKLKEALAILDYVNQQGIPVNPTTFSSLLAACVR 121

Query: 199 TKSLSHGRLVHTHININSLQNNEFLLAKLVHMYT 98
           +KSL+ G+ +H HI  N L+NNEFL  K  ++ T
Sbjct: 122 SKSLADGKQIHVHIRTNGLKNNEFLRTKHAYIGT 155


>ref|XP_007019854.1| Pentatricopeptide repeat (PPR-like) superfamily protein, putative
           [Theobroma cacao] gi|508725182|gb|EOY17079.1|
           Pentatricopeptide repeat (PPR-like) superfamily protein,
           putative [Theobroma cacao]
          Length = 529

 Score =  140 bits (352), Expect = 4e-31
 Identities = 65/100 (65%), Positives = 82/100 (82%)
 Frame = -1

Query: 424 QFPSKKPHKKFSQEDAFPQSLPLHSKNPSSIYKDIQRFARQDKLKEALTILDYLDKQGIP 245
           +F  ++    F +++AF  SLPLH+KNP +IYKDIQRFARQ+KLKEAL ILDY+D QGIP
Sbjct: 47  KFAHRRSPPPFFEKNAFSSSLPLHTKNPHAIYKDIQRFARQNKLKEALAILDYVDHQGIP 106

Query: 244 VNPTTFSSLIAACIRTKSLSHGRLVHTHININSLQNNEFL 125
           VNPT+FSSL+AAC+R+KSL+ GR +H HI  N L+NNEFL
Sbjct: 107 VNPTSFSSLLAACVRSKSLADGRQIHAHIRTNGLENNEFL 146