BLASTX nr result
ID: Cocculus22_contig00016863
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00016863
(552 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 100 3e-19
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 92 9e-17
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 92 9e-17
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 91 1e-16
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 90 3e-16
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 89 6e-16
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 89 6e-16
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 89 6e-16
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 89 7e-16
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ... 87 2e-15
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 87 2e-15
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 87 4e-15
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ... 86 6e-15
ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A... 81 3e-14
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 83 4e-14
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 82 9e-14
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana] 81 2e-13
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 81 2e-13
ref|XP_007015140.1| Ribonuclease H protein, putative [Theobroma ... 80 3e-13
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 79 6e-13
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 100 bits (248), Expect = 3e-19
Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W+ ICKPKKE GLG++ +E+N ++KL W + S +DSLW KW LK ES W++
Sbjct: 581 VSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSI 640
Query: 210 -PHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
H T SW+WR++LKH + + +V NGV T W D
Sbjct: 641 GTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFD 680
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 92.0 bits (227), Expect = 9e-17
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W+ +CKPK E GLG+R KE+N +KL W I S +SLW KW+ E ++ +S+W+L
Sbjct: 507 ISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSL 566
Query: 210 PHITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
T SW+WRKILK + + +VGNG W D
Sbjct: 567 KQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYD 606
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 92.0 bits (227), Expect = 9e-17
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W+ ICKPK+E GLG+R E+N+ +KL W + S DSLW KW LK ES W+L
Sbjct: 265 VSWDDICKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 324
Query: 210 -PHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLD 356
P+ + SW+W+K+LK+ + +V NG +T W D MG +D
Sbjct: 325 TPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMD 374
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 91.3 bits (225), Expect = 1e-16
Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W +CKPK E GLG+R KE+N +KL W I S DSLW KW+ LK E W +
Sbjct: 413 ISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIV 472
Query: 210 PHITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLD 356
+ SW+W+KILK+ + + +VGNG T W D ++G +D
Sbjct: 473 KENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLID 522
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 90.1 bits (222), Expect = 3e-16
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W +CKPK E GLG+R KE+N +KL W I S +SLW KW+ + L+ S W +
Sbjct: 860 ISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEV 919
Query: 210 PH-ITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
++ SW+W+K+LK+ + + +VGNG QT W D
Sbjct: 920 KQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYD 959
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 89.4 bits (220), Expect = 6e-16
Identities = 41/106 (38%), Positives = 61/106 (57%)
Frame = +3
Query: 9 HSKSIHLLNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLK 188
+++ +H +NW ICKP+ E GLG+R+ ++ N A K++W I S D LW K + EKY+K
Sbjct: 1368 NTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVK 1427
Query: 189 PESLWTLPHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
L ++CSW WR I+K ++ I VGNG + W D
Sbjct: 1428 NADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWND 1473
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 89.4 bits (220), Expect = 6e-16
Identities = 41/106 (38%), Positives = 61/106 (57%)
Frame = +3
Query: 9 HSKSIHLLNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLK 188
+++ +H +NW ICKP+ E GLG+R+ ++ N A K++W I S D LW K + EKY+K
Sbjct: 836 NTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVK 895
Query: 189 PESLWTLPHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
L ++CSW WR I+K ++ I VGNG + W D
Sbjct: 896 NADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWND 941
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 89.4 bits (220), Expect = 6e-16
Identities = 41/106 (38%), Positives = 61/106 (57%)
Frame = +3
Query: 9 HSKSIHLLNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLK 188
+++ +H +NW ICKP+ E GLG+R+ ++ N A K++W I S D LW K + EKY+K
Sbjct: 836 NTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVK 895
Query: 189 PESLWTLPHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
L ++CSW WR I+K ++ I VGNG + W D
Sbjct: 896 NADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWND 941
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 89.0 bits (219), Expect = 7e-16
Identities = 43/100 (43%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
+ W +CKPK+E GLG+R KE+N +KL W I S DSLW KWI LK S W +
Sbjct: 109 ITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVSFWAV 168
Query: 210 PHITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
T SW+WRKILK + ++ NG +T W D
Sbjct: 169 RENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYD 208
>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
hypothetical protein At5g13655 [Arabidopsis thaliana]
Length = 385
Score = 87.4 bits (215), Expect = 2e-15
Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLPH 215
W +C PK E GLG+R +E+N +KL W I S K SLW W+ + L+ SLW +
Sbjct: 21 WSVVCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKE 80
Query: 216 ITD-CSWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLDHMVKISEEG 383
+ SW+W+K+LK+ +C V NG T W D +GC D K E G
Sbjct: 81 TSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWSSLGCLYD---KFGERG 134
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 87.4 bits (215), Expect = 2e-15
Identities = 43/98 (43%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLPH 215
W +CKPK+E GLG+R KE+N +KL W I S DSLW KWI LK W +
Sbjct: 192 WAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRE 251
Query: 216 ITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
T SW+WRKILK + ++ NG QT W D
Sbjct: 252 NTSLGSWMWRKILKFRDIARTLCKVEINNGAQTSFWYD 289
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 86.7 bits (213), Expect = 4e-15
Identities = 46/108 (42%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLPH 215
W +CKPK E GLG+R KE+N +KL W I S DSLW KWIH LK S W +
Sbjct: 244 WTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVRE 303
Query: 216 ITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLD 356
T SW+W+K+LK +V NG T W D MG +D
Sbjct: 304 NTSLGSWMWKKVLKFRDAAIQLCKAEVNNGAHTFFWYDNWSDMGRLID 351
>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1115
Score = 85.9 bits (211), Expect = 6e-15
Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W+ ICKPK + GLG+R E+N+ +KL W + S DSLW KW LK ES W+L
Sbjct: 777 VSWDDICKPK-QGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSL 835
Query: 210 -PHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLD 356
P+ + SW+W+K+LK+ + +V NG +T W D MG +D
Sbjct: 836 KPNSSLGSWMWKKMLKYRETAKPFSRVEVNNGARTSFWFDNWSGMGHLMD 885
>ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
sativus]
Length = 265
Score = 80.9 bits (198), Expect(2) = 3e-14
Identities = 37/97 (38%), Positives = 53/97 (54%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLPH 215
W+ +C P E GL IR N+A +K+ W + K SLW W+ LK SLW +
Sbjct: 132 WDEVCLPFDEGGLVIRDRSSWNIASTLKILWLLLVKSGSLWVAWVEAYILKGRSLWEIDV 191
Query: 216 ITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
SW +R IL+ ++E H+ +VGNG + R+WLD
Sbjct: 192 GVGRSWCFRAILRKREILEAHVNIEVGNGKKCRVWLD 228
Score = 23.1 bits (48), Expect(2) = 3e-14
Identities = 5/16 (31%), Positives = 12/16 (75%)
Frame = +2
Query: 326 PWLNNGVLVRSYGENI 373
PW+ G +++ +GE++
Sbjct: 229 PWIQGGPIIQQFGESV 244
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 83.2 bits (204), Expect = 4e-14
Identities = 36/97 (37%), Positives = 54/97 (55%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLPH 215
WE +C+PK+E GLG++ KE+N +KL W I S+ DSLW +WI LK + W+
Sbjct: 380 WETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRS 439
Query: 216 ITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
+ SW+W+K+LK+ + + NG W D
Sbjct: 440 ASQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYD 476
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 977
Score = 82.0 bits (201), Expect = 9e-14
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Frame = +3
Query: 30 LNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTL 209
++W+ +CKPKKE GLG+R KE+N +K+ W I S +SLW KWI + LK E+ W +
Sbjct: 817 VSWDDVCKPKKEGGLGLRSLKEANDVCCLKVVWKIVSHGNSLWVKWIEKFLLKNETFWFV 876
Query: 210 PHITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLDHMVKISEEGQ 386
T SW+WRK++K + +V G T W D MG ++ K+ + G
Sbjct: 877 KENTTLGSWMWRKLIKFREKAKNFCKVEVNKGNCTSFWYDDWSNMGQMVE---KVGDRGM 933
Query: 387 V 389
+
Sbjct: 934 I 934
>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 81.3 bits (199), Expect = 2e-13
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLP- 212
W +C PK E GLGIR KE+N +KL W + S SLW +W+ L+ S W++
Sbjct: 118 WSDVCTPKDEGGLGIRSLKEANKVSLLKLIWRMLS-STSLWVQWLRLYLLRKGSFWSISG 176
Query: 213 HITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
+ T SW+W+KILKH L + H + NG T W D
Sbjct: 177 NTTLGSWMWKKILKHRALASGFVKHDIHNGSNTSFWFD 214
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 81.3 bits (199), Expect = 2e-13
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Frame = +3
Query: 36 WEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKPESLWTLPH 215
W +CK K+E GLG++ KE+N +KL W I S +DSLW KW+++ ++ E+ W++
Sbjct: 1009 WSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKE 1068
Query: 216 ITDC-SWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLDHM 362
T SW+WRKILK +V +G T W D +G HM
Sbjct: 1069 NTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHM 1118
>ref|XP_007015140.1| Ribonuclease H protein, putative [Theobroma cacao]
gi|508785503|gb|EOY32759.1| Ribonuclease H protein,
putative [Theobroma cacao]
Length = 337
Score = 80.1 bits (196), Expect = 3e-13
Identities = 43/117 (36%), Positives = 65/117 (55%)
Frame = +3
Query: 6 GHSKSIHLLNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYL 185
G +K H ++WE +C PK+E GL +R + NLA KL W + + LW + +KYL
Sbjct: 11 GGNKKNHGVSWEKLCSPKEEGGLQLRNLRFLNLALLGKLGWRLLMDTNHLWVDMLQKKYL 70
Query: 186 KPESLWTLPHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLDLG*IMGCWLD 356
+ ++L T+ + S VWR ILK +++E + V NG+ TR W+D WLD
Sbjct: 71 RDDNLMTVTAKSSDSHVWRSILKARYILEKGLGKVVTNGIATRFWVD------SWLD 121
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 79.3 bits (194), Expect = 6e-13
Identities = 34/105 (32%), Positives = 58/105 (55%)
Frame = +3
Query: 12 SKSIHLLNWEAICKPKKEDGLGIRLTKESNLAGNIKLSWWIASKKDSLWCKWIHEKYLKP 191
+KS + + W IC+PK G+G R + +N+A +KL W I KD++W K + +KYLK
Sbjct: 849 AKSANFIGWNKICQPKSVGGVGFRKAEVTNIALQMKLLWKIMVSKDNIWVKLVTQKYLKE 908
Query: 192 ESLWTLPHITDCSWVWRKILKHWHLIECHILHQVGNGVQTRLWLD 326
++L ++ SW W+ +L+H + + +G+G W D
Sbjct: 909 QNLLVCKIPSNASWQWKNLLRHRNFFSKGLRWLIGDGQDISFWTD 953