BLASTX nr result
ID: Cocculus22_contig00016623
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00016623
(437 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_740260.1| hypothetical chloroplast RF1 [Liriodendron tuli... 69 5e-10
ref|YP_008993664.1| hypothetical chloroplast RF19 (chloroplast) ... 68 1e-09
ref|YP_008993320.1| hypothetical chloroplast RF19 (chloroplast) ... 68 1e-09
ref|YP_008993234.1| hypothetical chloroplast RF19 (chloroplast) ... 68 1e-09
ref|YP_004769771.1| hypothetical chloroplast RF19 [Magnolia kwan... 68 1e-09
ref|YP_009026939.1| photosystem I assembly protein Ycf1 [Magnoli... 67 2e-09
gb|AEX98809.1| photosystem I assembly protein Ycf1-like protein ... 67 2e-09
gb|AEX98725.1| photosystem I assembly protein Ycf1 (chloroplast)... 67 2e-09
ref|YP_007474509.1| photosystem I assembly protein Ycf1 (chlorop... 67 2e-09
ref|YP_007474425.1| hypothetical chloroplast RF1 (chloroplast) [... 67 2e-09
ref|NP_862813.1| Ycf1 protein [Calycanthus floridus var. glaucus... 67 3e-09
ref|YP_008993750.1| hypothetical chloroplast RF19 (chloroplast) ... 67 3e-09
ref|YP_008993922.1| hypothetical chloroplast RF19 (chloroplast) ... 67 3e-09
ref|YP_008993578.1| hypothetical chloroplast RF19 (chloroplast) ... 67 3e-09
ref|YP_008993492.1| hypothetical chloroplast RF19 (chloroplast) ... 67 3e-09
ref|YP_008993406.1| hypothetical chloroplast RF19 (chloroplast) ... 67 3e-09
ref|YP_007474593.1| photosystem I assembly protein Ycf1 (chlorop... 67 3e-09
gb|AEX98391.1| photosystem I assembly protein Ycf1 (chloroplast)... 67 3e-09
ref|YP_006576172.1| Ycf1 (chloroplast) [Magnolia denudata] gi|34... 67 3e-09
ref|YP_001294145.1| hypothetical chloroplast RF1 [Chloranthus sp... 66 4e-09
>ref|YP_740260.1| hypothetical chloroplast RF1 [Liriodendron tulipifera]
gi|118574755|sp|Q0G9G1.1|YCF1_LIRTU RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|113201052|gb|ABI32567.1| hypothetical chloroplast RF1
[Liriodendron tulipifera]
Length = 1835
Score = 69.3 bits (168), Expect = 5e-10
Identities = 34/35 (97%), Positives = 35/35 (100%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAETWDTI+FAQAIRGSMLVTQSILRKYIVLP
Sbjct: 762 RIAIAETWDTIIFAQAIRGSMLVTQSILRKYIVLP 796
>ref|YP_008993664.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia odora]
Length = 1852
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQAIRGSMLVTQSILRKYIVLP
Sbjct: 777 RIAIAENWDTILFAQAIRGSMLVTQSILRKYIVLP 811
>ref|YP_008993320.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia dealbata]
Length = 1846
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQAIRGSMLVTQSILRKYIVLP
Sbjct: 771 RIAIAENWDTILFAQAIRGSMLVTQSILRKYIVLP 805
>ref|YP_008993234.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia cathcartii]
Length = 1837
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQAIRGSMLVTQSILRKYIVLP
Sbjct: 762 RIAIAENWDTILFAQAIRGSMLVTQSILRKYIVLP 796
>ref|YP_004769771.1| hypothetical chloroplast RF19 [Magnolia kwangsiensis]
gi|302424237|gb|ADL39113.1| hypothetical chloroplast
RF19 [Magnolia kwangsiensis]
Length = 1838
Score = 68.2 bits (165), Expect = 1e-09
Identities = 34/35 (97%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQAIRGSMLVTQSILRKYIVLP
Sbjct: 765 RIAIAENWDTILFAQAIRGSMLVTQSILRKYIVLP 799
>ref|YP_009026939.1| photosystem I assembly protein Ycf1 [Magnolia tripetala]
gi|608608461|gb|AHW52015.1| photosystem I assembly
protein Ycf1 [Magnolia tripetala]
Length = 1846
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTI+FAQAIRGSMLVTQSILRKYIVLP
Sbjct: 771 RIAIAENWDTIIFAQAIRGSMLVTQSILRKYIVLP 805
>gb|AEX98809.1| photosystem I assembly protein Ycf1-like protein (chloroplast)
[Magnolia officinalis subsp. biloba]
Length = 1863
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTI+FAQAIRGSMLVTQSILRKYIVLP
Sbjct: 789 RIAIAENWDTIIFAQAIRGSMLVTQSILRKYIVLP 823
>gb|AEX98725.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
officinalis subsp. biloba]
Length = 1863
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTI+FAQAIRGSMLVTQSILRKYIVLP
Sbjct: 789 RIAIAENWDTIIFAQAIRGSMLVTQSILRKYIVLP 823
>ref|YP_007474509.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
officinalis subsp. biloba] gi|372862561|gb|AEX98641.1|
photosystem I assembly protein Ycf1 (chloroplast)
[Magnolia officinalis subsp. biloba]
Length = 1863
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTI+FAQAIRGSMLVTQSILRKYIVLP
Sbjct: 789 RIAIAENWDTIIFAQAIRGSMLVTQSILRKYIVLP 823
>ref|YP_007474425.1| hypothetical chloroplast RF1 (chloroplast) [Magnolia officinalis]
gi|372862476|gb|AEX98557.1| hypothetical chloroplast RF1
(chloroplast) [Magnolia officinalis]
Length = 1863
Score = 67.4 bits (163), Expect = 2e-09
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTI+FAQAIRGSMLVTQSILRKYIVLP
Sbjct: 789 RIAIAENWDTIIFAQAIRGSMLVTQSILRKYIVLP 823
>ref|NP_862813.1| Ycf1 protein [Calycanthus floridus var. glaucus]
gi|75146316|sp|Q7YJS6.1|YCF1_CALFG RecName:
Full=Putative membrane protein ycf1
gi|32399439|emb|CAD28780.1| Ycf1 protein [Calycanthus
floridus var. glaucus]
Length = 1828
Score = 67.0 bits (162), Expect = 3e-09
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAETWDTI+FAQAIRG MLVTQSILRKYIVLP
Sbjct: 768 RIAIAETWDTIIFAQAIRGIMLVTQSILRKYIVLP 802
>ref|YP_008993750.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia salicifolia]
Length = 1858
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQ IRGSMLVTQSILRKYIVLP
Sbjct: 783 RIAIAENWDTILFAQTIRGSMLVTQSILRKYIVLP 817
>ref|YP_008993922.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia sprengeri]
Length = 1846
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQ IRGSMLVTQSILRKYIVLP
Sbjct: 771 RIAIAENWDTILFAQTIRGSMLVTQSILRKYIVLP 805
>ref|YP_008993578.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia liliifera]
Length = 1852
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQ IRGSMLVTQSILRKYIVLP
Sbjct: 777 RIAIAENWDTILFAQTIRGSMLVTQSILRKYIVLP 811
>ref|YP_008993492.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia kobus]
Length = 1858
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQ IRGSMLVTQSILRKYIVLP
Sbjct: 783 RIAIAENWDTILFAQTIRGSMLVTQSILRKYIVLP 817
>ref|YP_008993406.1| hypothetical chloroplast RF19 (chloroplast) [Magnolia pyramidata]
Length = 1858
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RI IAE WDTILFAQAIRGSMLVTQSILRKYIVLP
Sbjct: 783 RITIAENWDTILFAQAIRGSMLVTQSILRKYIVLP 817
>ref|YP_007474593.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
grandiflora] gi|372862899|gb|AEX98975.1| photosystem I
assembly protein Ycf1 (chloroplast) [Magnolia
grandiflora]
Length = 1843
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RI IAE WDTILFAQAIRGSMLVTQSILRKYIVLP
Sbjct: 771 RITIAENWDTILFAQAIRGSMLVTQSILRKYIVLP 805
>gb|AEX98391.1| photosystem I assembly protein Ycf1 (chloroplast) [Magnolia
denudata]
Length = 1863
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQ IRGSMLVTQSILRKYIVLP
Sbjct: 789 RIAIAENWDTILFAQTIRGSMLVTQSILRKYIVLP 823
>ref|YP_006576172.1| Ycf1 (chloroplast) [Magnolia denudata] gi|343887596|gb|AEM65275.1|
Ycf1 [Magnolia denudata]
Length = 1863
Score = 66.6 bits (161), Expect = 3e-09
Identities = 33/35 (94%), Positives = 33/35 (94%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP 294
RIAIAE WDTILFAQ IRGSMLVTQSILRKYIVLP
Sbjct: 789 RIAIAENWDTILFAQTIRGSMLVTQSILRKYIVLP 823
>ref|YP_001294145.1| hypothetical chloroplast RF1 [Chloranthus spicatus]
gi|182702243|sp|A6MMG9.1|YCF1_CHLSC RecName:
Full=Putative membrane protein ycf1; Short=RF1
gi|146744234|gb|ABQ43306.1| hypothetical chloroplast RF1
[Chloranthus spicatus]
Length = 1877
Score = 66.2 bits (160), Expect = 4e-09
Identities = 40/68 (58%), Positives = 43/68 (63%), Gaps = 11/68 (16%)
Frame = -1
Query: 398 RIAIAETWDTILFAQAIRGSMLVTQSILRKYIVLP**SEGGIYVNNTTR----------- 252
RI IAE WDTI+FAQAIRGSMLVTQSILRKYIVLP I N R
Sbjct: 802 RIFIAEIWDTIIFAQAIRGSMLVTQSILRKYIVLP----SLIIAKNIGRMLLFQFPEWYE 857
Query: 251 SLKGWNQK 228
LKGWN++
Sbjct: 858 DLKGWNKE 865