BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00016594
         (563 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prun...    92   7e-17
ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron sp...    89   1e-15
gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitat...    79   8e-13
ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron sp...    76   7e-12
ref|XP_007034977.1| CRM family member 3A isoform 4 [Theobroma ca...    76   7e-12
ref|XP_007034976.1| CRM family member 3A isoform 3 [Theobroma ca...    76   7e-12
ref|XP_007034975.1| CRM family member 3A isoform 2 [Theobroma ca...    76   7e-12
ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma ca...    76   7e-12
emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]    75   9e-12
ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron sp...    74   3e-11
ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citr...    72   1e-10
ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citr...    72   1e-10
ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron sp...    71   2e-10
ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron sp...    71   2e-10
ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Popu...    71   2e-10
ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron sp...    70   3e-10
ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron sp...    64   2e-08
ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron sp...    64   2e-08
ref|XP_007144072.1| hypothetical protein PHAVU_007G126200g [Phas...    63   6e-08
ref|XP_003590782.1| Chloroplastic group IIA intron splicing faci...    59   9e-07

>ref|XP_007227020.1| hypothetical protein PRUPE_ppa001134mg [Prunus persica]
           gi|462423956|gb|EMJ28219.1| hypothetical protein
           PRUPE_ppa001134mg [Prunus persica]
          Length = 899

 Score = 92.4 bits (228), Expect = 7e-17
 Identities = 64/174 (36%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPRNSDFMLKSK----------- 320
           HG H  +    SSIPFKK  FY T  +       E+ P R S+F+ K++           
Sbjct: 26  HGPHIHLFRCGSSIPFKKHTFYATHYTISSTLNPEQNPLRKSNFVRKNQPISQYKPKKNF 85

Query: 319 -NCGWNHSVENAYQPKFQKDEQALLDYRMGSDGDVPSEYDDSERMKGNGSRTLSSKMGKI 143
            +  W      +++    K  +A+LDY+    G++ S    +E   G G  +  S M KI
Sbjct: 86  SSSSWIDKWNESHKHNRPKPPRAVLDYQSSESGNL-SGSGYAEGDGGGGRNSSGSTMEKI 144

Query: 142 VEKLKGFGYAEEVNETK----ERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           VEKLK FGY ++ NE K    + +  K S+E IFY EEG   NS+GGFS ESPL
Sbjct: 145 VEKLKKFGYVDDSNENKGEVRDSVIEKGSVEDIFYIEEGMLPNSRGGFSEESPL 198


>ref|XP_004291748.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 852

 Score = 88.6 bits (218), Expect = 1e-15
 Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 15/170 (8%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPRNSDFML----KSKN---CGW 308
           HG H  +  YSS IPFKK++F+ TQ     +   E+ PPR  + ++     +KN   C W
Sbjct: 23  HGTHFHLFRYSS-IPFKKQSFHATQYFITSSLTPEQNPPRKLNLLICQYKPTKNLSSCSW 81

Query: 307 NHSVENAYQPKFQKDEQALLDYRMGSDGDVPSEYDDSERMKGNGSRTLSSKMGKIVEKLK 128
                ++ +    +  +A+LDY+    G++ S+ +D             S M KIVEKLK
Sbjct: 82  IDRWNDSRKQHGPRRPRAVLDYQSNESGNLSSDGNDG-----------GSTMDKIVEKLK 130

Query: 127 GFGY-AEEVN----ETKERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
            FGY AE+ N    E +ER+  K S+E IFY EEG   NS+GGFS  SPL
Sbjct: 131 KFGYIAEDKNEGRGEVRERVIEKGSVEDIFYVEEGMLPNSRGGFSGVSPL 180


>gb|EXB29861.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
           notabilis]
          Length = 878

 Score = 79.0 bits (193), Expect = 8e-13
 Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQ-NSFRLNSALEKYP-PRNSDFMLKSKNCGWNHSVE 293
           HG H +   Y SSI F+K   Y T+ +S   +S+ E+ P  + + F   ++N  W++  +
Sbjct: 19  HGTHIKFFRYGSSITFRKHRLYSTKYSSVNSSSSSEQNPGGKYNKFFRTTQNNNWHNKYD 78

Query: 292 N-------------AYQPKFQKDEQALLDYRMGSDGDVP-SEYDDSERMKGNGSRTLSSK 155
           +              +Q    K   A+LDYR    G+ P S Y       G  + +  S 
Sbjct: 79  DNLSSTSWIEKWNETHQQIRPKPPGAVLDYRNSESGNQPRSSY---ANRNGGDNNSGGST 135

Query: 154 MGKIVEKLKGFGYAEEV-----NETKERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           M +IVEKLK FGY ++V      +  ER+  K S+E IFY EEG   N +GGFS +SPL
Sbjct: 136 MERIVEKLKKFGYMDDVGSEGKEDKGERVIEKGSVEDIFYVEEGMLPNPRGGFSPDSPL 194


>ref|XP_006489518.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Citrus sinensis]
          Length = 933

 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 66/185 (35%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPR-------NSDFMLKSKNCGW 308
           HG H        SIP K R FY    +F  NSA EK PPR       N+ F    K+   
Sbjct: 27  HGTHFHFFRCGHSIPLKNRFFY---QNFSSNSAHEKNPPRKTCSFSTNNFFSQHDKDDNA 83

Query: 307 NHSVENAYQPKFQKDE--------QALLDYRMGSD--GDVPSEYDDSERMKGNGSRTLSS 158
           N    +++  K+ K          QA ++YR  +     +     DS+     G     +
Sbjct: 84  NLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGN 143

Query: 157 KMGKIVEKLKGFGYA----------EEVNETKERLPPKKSLEYIFYAEEG---NSQGGFS 17
            MGKIVEKLK FGY           E   + KER+  K S+E IFY EEG   N++GGFS
Sbjct: 144 TMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFS 203

Query: 16  RESPL 2
           +ESPL
Sbjct: 204 KESPL 208


>ref|XP_007034977.1| CRM family member 3A isoform 4 [Theobroma cacao]
           gi|508714006|gb|EOY05903.1| CRM family member 3A isoform
           4 [Theobroma cacao]
          Length = 645

 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 63/170 (37%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
 Frame = -2

Query: 466 HGFHPQILMY-SSSIPFKKRNFYITQNSFRLNSALEKYPP-RNSDFMLKSKN--CGWNHS 299
           HG       Y SS+ P K    Y    +   NS   +YP  +   F  K       W  S
Sbjct: 31  HGLPLPFCSYDSSNFPLKTSTLYAANYTVTSNSLFHQYPKSKTKAFPTKDPTFRSNWLDS 90

Query: 298 VENAYQPKFQKDEQALLDYRMGSDGDVPS-EYDDSERMKGNGSRTLSSKMGKIVEKLKGF 122
               ++    K  + + +YR    GDV S  Y  S+    N  R+ SS M KIVEKLK F
Sbjct: 91  WNKTHKGFGPKPPKTVFNYR--KKGDVWSLSYSQSD----NNGRSSSSTMEKIVEKLKKF 144

Query: 121 GYAEEVNETKE-------RLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           GY  E NE KE       R+  + S+E IFY EEG   N++GGFS+ESPL
Sbjct: 145 GYIGEENEQKEKGEEEPKRVIERGSIEDIFYVEEGMLPNNRGGFSKESPL 194


>ref|XP_007034976.1| CRM family member 3A isoform 3 [Theobroma cacao]
           gi|508714005|gb|EOY05902.1| CRM family member 3A isoform
           3 [Theobroma cacao]
          Length = 856

 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 63/170 (37%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
 Frame = -2

Query: 466 HGFHPQILMY-SSSIPFKKRNFYITQNSFRLNSALEKYPP-RNSDFMLKSKN--CGWNHS 299
           HG       Y SS+ P K    Y    +   NS   +YP  +   F  K       W  S
Sbjct: 31  HGLPLPFCSYDSSNFPLKTSTLYAANYTVTSNSLFHQYPKSKTKAFPTKDPTFRSNWLDS 90

Query: 298 VENAYQPKFQKDEQALLDYRMGSDGDVPS-EYDDSERMKGNGSRTLSSKMGKIVEKLKGF 122
               ++    K  + + +YR    GDV S  Y  S+    N  R+ SS M KIVEKLK F
Sbjct: 91  WNKTHKGFGPKPPKTVFNYR--KKGDVWSLSYSQSD----NNGRSSSSTMEKIVEKLKKF 144

Query: 121 GYAEEVNETKE-------RLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           GY  E NE KE       R+  + S+E IFY EEG   N++GGFS+ESPL
Sbjct: 145 GYIGEENEQKEKGEEEPKRVIERGSIEDIFYVEEGMLPNNRGGFSKESPL 194


>ref|XP_007034975.1| CRM family member 3A isoform 2 [Theobroma cacao]
           gi|508714004|gb|EOY05901.1| CRM family member 3A isoform
           2 [Theobroma cacao]
          Length = 685

 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 63/170 (37%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
 Frame = -2

Query: 466 HGFHPQILMY-SSSIPFKKRNFYITQNSFRLNSALEKYPP-RNSDFMLKSKN--CGWNHS 299
           HG       Y SS+ P K    Y    +   NS   +YP  +   F  K       W  S
Sbjct: 31  HGLPLPFCSYDSSNFPLKTSTLYAANYTVTSNSLFHQYPKSKTKAFPTKDPTFRSNWLDS 90

Query: 298 VENAYQPKFQKDEQALLDYRMGSDGDVPS-EYDDSERMKGNGSRTLSSKMGKIVEKLKGF 122
               ++    K  + + +YR    GDV S  Y  S+    N  R+ SS M KIVEKLK F
Sbjct: 91  WNKTHKGFGPKPPKTVFNYR--KKGDVWSLSYSQSD----NNGRSSSSTMEKIVEKLKKF 144

Query: 121 GYAEEVNETKE-------RLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           GY  E NE KE       R+  + S+E IFY EEG   N++GGFS+ESPL
Sbjct: 145 GYIGEENEQKEKGEEEPKRVIERGSIEDIFYVEEGMLPNNRGGFSKESPL 194


>ref|XP_007034974.1| CRM family member 3A isoform 1 [Theobroma cacao]
           gi|508714003|gb|EOY05900.1| CRM family member 3A isoform
           1 [Theobroma cacao]
          Length = 876

 Score = 75.9 bits (185), Expect = 7e-12
 Identities = 63/170 (37%), Positives = 80/170 (47%), Gaps = 15/170 (8%)
 Frame = -2

Query: 466 HGFHPQILMY-SSSIPFKKRNFYITQNSFRLNSALEKYPP-RNSDFMLKSKN--CGWNHS 299
           HG       Y SS+ P K    Y    +   NS   +YP  +   F  K       W  S
Sbjct: 31  HGLPLPFCSYDSSNFPLKTSTLYAANYTVTSNSLFHQYPKSKTKAFPTKDPTFRSNWLDS 90

Query: 298 VENAYQPKFQKDEQALLDYRMGSDGDVPS-EYDDSERMKGNGSRTLSSKMGKIVEKLKGF 122
               ++    K  + + +YR    GDV S  Y  S+    N  R+ SS M KIVEKLK F
Sbjct: 91  WNKTHKGFGPKPPKTVFNYR--KKGDVWSLSYSQSD----NNGRSSSSTMEKIVEKLKKF 144

Query: 121 GYAEEVNETKE-------RLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           GY  E NE KE       R+  + S+E IFY EEG   N++GGFS+ESPL
Sbjct: 145 GYIGEENEQKEKGEEEPKRVIERGSIEDIFYVEEGMLPNNRGGFSKESPL 194


>emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
          Length = 902

 Score = 75.5 bits (184), Expect = 9e-12
 Identities = 59/176 (33%), Positives = 82/176 (46%), Gaps = 21/176 (11%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPRNSDFM-------------LK 326
           H    Q   Y SS  F+  + Y+T+N+   NS     P R S+ +             + 
Sbjct: 21  HSTRLQFFRYGSSNRFRTHSSYVTRNTIASNST---NPQRKSNIVFTNTPVSQYDSGGVS 77

Query: 325 SKNCGWNHSVENAYQPKFQKDEQALLDYRMGSDGDVPSEYDDSERM-KGNGSRTLSSKMG 149
           S    W       +Q    K+ + +++YR            +SE + + +G     S M 
Sbjct: 78  SSGGNWIDKWNGPHQKSHPKEXRPVMNYR------------NSETVSRSDGGSGGGSTME 125

Query: 148 KIVEKLKGFGYAEEVNETK----ERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           KIVEKLK FGY ++V ETK    ER+  K S+E IFY EEG   N QGGFS +SPL
Sbjct: 126 KIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPL 181


>ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic [Vitis vinifera]
           gi|297737163|emb|CBI26364.3| unnamed protein product
           [Vitis vinifera]
          Length = 902

 Score = 73.9 bits (180), Expect = 3e-11
 Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPRNSDFM-------------LK 326
           H    Q   Y SS  F+  + Y+ +N+   NS     P R S+ +             + 
Sbjct: 21  HSTRLQFFRYGSSNRFRTHSSYVARNTIASNST---NPQRKSNIVFTNTPVSQYDSGGVS 77

Query: 325 SKNCGWNHSVENAYQPKFQKDEQALLDYRMGSDGDVPSEYDDSERM-KGNGSRTLSSKMG 149
           S    W       +Q    K+ + +++YR            +SE + + +G     S M 
Sbjct: 78  SSGGNWIDKWNGPHQKSHPKESRPVMNYR------------NSETVSRSDGGSGGGSTME 125

Query: 148 KIVEKLKGFGYAEEVNETK----ERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           KIVEKLK FGY ++V ETK    ER+  K S+E IFY EEG   N QGGFS +SPL
Sbjct: 126 KIVEKLKKFGYMDDVKETKENVQERIIEKGSIEDIFYIEEGILPNPQGGFSLDSPL 181


>ref|XP_006420115.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
           gi|557521988|gb|ESR33355.1| hypothetical protein
           CICLE_v10004262mg [Citrus clementina]
          Length = 934

 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 65/185 (35%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPR-------NSDFMLKSKNCGW 308
           HG H        SIP K   FY    +F  NSA EK  PR       N+ F    K+   
Sbjct: 27  HGTHFHFFRCGHSIPLKNHFFY---QNFSSNSAHEKNTPRKICSFSTNNFFSQHDKDDNA 83

Query: 307 NHSVENAYQPKFQKDE--------QALLDYRMGSD--GDVPSEYDDSERMKGNGSRTLSS 158
           N    +++  K+ K          QA ++YR  +     +     DS+     G     S
Sbjct: 84  NLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGS 143

Query: 157 KMGKIVEKLKGFGYA----------EEVNETKERLPPKKSLEYIFYAEEG---NSQGGFS 17
            MGKIVEKLK FGY           E   + KER+  K S+E IFY EEG   N++GGFS
Sbjct: 144 TMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFS 203

Query: 16  RESPL 2
           +ESPL
Sbjct: 204 KESPL 208


>ref|XP_006420114.1| hypothetical protein CICLE_v10004262mg [Citrus clementina]
           gi|557521987|gb|ESR33354.1| hypothetical protein
           CICLE_v10004262mg [Citrus clementina]
          Length = 860

 Score = 72.0 bits (175), Expect = 1e-10
 Identities = 65/185 (35%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPR-------NSDFMLKSKNCGW 308
           HG H        SIP K   FY    +F  NSA EK  PR       N+ F    K+   
Sbjct: 27  HGTHFHFFRCGHSIPLKNHFFY---QNFSSNSAHEKNTPRKICSFSTNNFFSQHDKDDNA 83

Query: 307 NHSVENAYQPKFQKDE--------QALLDYRMGSD--GDVPSEYDDSERMKGNGSRTLSS 158
           N    +++  K+ K          QA ++YR  +     +     DS+     G     S
Sbjct: 84  NLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSALGFARTDSDGNGVGGVDDGGS 143

Query: 157 KMGKIVEKLKGFGYA----------EEVNETKERLPPKKSLEYIFYAEEG---NSQGGFS 17
            MGKIVEKLK FGY           E   + KER+  K S+E IFY EEG   N++GGFS
Sbjct: 144 TMGKIVEKLKKFGYVGDGDGDGDNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFS 203

Query: 16  RESPL 2
           +ESPL
Sbjct: 204 KESPL 208


>ref|XP_004495335.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cicer arietinum]
          Length = 838

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 61/168 (36%), Positives = 84/168 (50%), Gaps = 17/168 (10%)
 Frame = -2

Query: 457 HPQILMYSSSIP-FKKRNFYI----TQNSFRLNSALEKYP--PRNSDFMLKSKNCGWNHS 299
           HP I  + +S P F    F+     T  +   N   +KYP  PRN+ F   +    WN  
Sbjct: 10  HPFIDSFHTSSPSFNSLRFFTYNLTTYKTPSTNFTFKKYPILPRNT-FSTHTWLKHWNQP 68

Query: 298 VENAYQPKFQKDEQALLDYRMGSDG-DVPSEYDDSERMKGNGSRTLSSKMGKIVEKLKGF 122
                +PK     +A+L+YR   +G    S +  S+    NG  T    M +IVEKLK F
Sbjct: 69  SSKHNRPK---PPRAVLNYRNSGNGHSSKSHFSSSDDEDNNGGST----MDRIVEKLKKF 121

Query: 121 GYAEEVNE------TKERLPPKKSLEYIFYAEEG---NSQGGFSRESP 5
           GY ++ ++      TKER+  K S+E IFY EEG   N++GGFS ESP
Sbjct: 122 GYDDDDDDEKKDHNTKERVIEKGSVEDIFYVEEGILPNTKGGFSSESP 169


>ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Glycine max]
          Length = 835

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 47/106 (44%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
 Frame = -2

Query: 310 WNHSVENAYQPKFQKDEQALLDYRMGSDGDVPSEYDDSERMKGNGSRTLSSKMGKIVEKL 131
           WN    N  +PK      A+LDY    +G        S   +G    T  S M +IVEKL
Sbjct: 68  WNDPTNNHARPK---PPCAVLDY--SENGHASKSGLASSDEEGGDGNTGGSTMDRIVEKL 122

Query: 130 KGFGYAEEVNETKERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           K FGY E+  + KER+  K S+E IFY EEG   NS+GGFS ESPL
Sbjct: 123 KKFGYVEDGIQNKERVIEKGSVEDIFYVEEGMLPNSRGGFSSESPL 168


>ref|XP_002315729.1| hypothetical protein POPTR_0010s08770g [Populus trichocarpa]
           gi|222864769|gb|EEF01900.1| hypothetical protein
           POPTR_0010s08770g [Populus trichocarpa]
          Length = 894

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 59/166 (35%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
 Frame = -2

Query: 466 HGFHPQILMYSSSIPFKKRNFY---ITQNSFRLNSALEKYPPRNSDFMLKSKNCGWNHSV 296
           HG   Q   YSSS P +  + Y   IT  +    S    +P   S  +  S    W  + 
Sbjct: 22  HGTPLQFFRYSSSFPLRSHSGYACSITDKNPSTKST--SFPTDKSKTLNLSTGSSWFFNW 79

Query: 295 ENAYQPKFQKDEQALLDYRMGSDGDVPSEYDDSERMKGNGSRTLSSKMGKIVEKLKGFGY 116
               +    +  QA+ DYR             S     +GS    S M KIVEKLK  GY
Sbjct: 80  NKPNKQNLPRTPQAVFDYR-------------SNNSNSSGS---GSTMEKIVEKLKKHGY 123

Query: 115 AE-EVNETKERLP----PKKSLEYIFYAEEG---NSQGGFSRESPL 2
            + +VNE KER+      K S+E IFY EEG   N++GGFS+ESPL
Sbjct: 124 MDGDVNENKERMQERVIEKGSVEDIFYVEEGMLPNARGGFSKESPL 169


>ref|XP_006352117.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Solanum tuberosum]
          Length = 883

 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 58/212 (27%)
 Frame = -2

Query: 466 HGFHPQ-----ILMYSSSIPFKKRNFYITQNSFRLNSALEKYPPRNSDFML--------- 329
           H F+P+      L YSSS PFKK NF+   +    +   ++ PP+ S+FM+         
Sbjct: 7   HQFYPRTTRLSFLRYSSSKPFKKPNFHAPHDIVNQDCIFKQNPPKRSNFMITPHDVVNQD 66

Query: 328 ---------------KSKNCGWNHSV---------------ENAYQPKFQ--------KD 263
                          K+ +  WN                   +++  K+         K 
Sbjct: 67  CIFRRTPSKRSNFVVKNSSRRWNLDTISPNLKSRDSGTSVFSSSWLGKWNGTRNDIKLKK 126

Query: 262 EQALLDYRMGSDGDVPSEYDDSERMKGNGSRTLSSKMGKIVEKLKGFGYAEEVNE---TK 92
            Q +L+YR  S+GD  S  D  E + G       S M +IVEKLK FGYA+E  E    +
Sbjct: 127 AQIVLNYR-NSNGDT-SGSDCEESISG-------STMDRIVEKLKKFGYADEATEKEKKE 177

Query: 91  ERLPPKKSLEYIFYAEEG---NSQGGFSRESP 5
           +R+  K S+E IF+ EEG   N +GGFS ESP
Sbjct: 178 KRVVEKGSIEDIFFVEEGILPNVRGGFSEESP 209


>ref|XP_004247646.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Solanum lycopersicum]
          Length = 883

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 58/212 (27%)
 Frame = -2

Query: 466 HGFHPQ-----ILMYSSSIPFKKRNFYITQNS------FRLNSA---------------- 368
           H F+P+        YSSS PFKK NF+   +       F+ N +                
Sbjct: 7   HQFYPRTTRLSFFRYSSSKPFKKPNFHAPHDIVNQDCIFKQNPSKRSNFVVTPHDVVNKD 66

Query: 367 --LEKYPPRNSDFMLKSKNCGWNHSV---------------ENAYQPKFQ--------KD 263
              ++ P + S+F++K+ +  WN                   +++  K+         K 
Sbjct: 67  CIFKRTPLKRSNFVVKNSSRRWNLDTISPNLKSRDSGTSVFSSSWLGKWNETRNDIKLKK 126

Query: 262 EQALLDYRMGSDGDVPSEYDDSERMKGNGSRTLSSKMGKIVEKLKGFGYAEEVNE---TK 92
            Q +L+YR  S+GD  S  D  E + G       S M +IVEKLK FGYA+E  E    +
Sbjct: 127 AQIVLNYR-NSNGDT-SGSDCEESISG-------STMDRIVEKLKKFGYADEATEKEKRE 177

Query: 91  ERLPPKKSLEYIFYAEEG---NSQGGFSRESP 5
           +R+  K S+E IF+ EEG   N +GGFS E+P
Sbjct: 178 KRVVEKGSIEDIFFVEEGILPNVRGGFSEETP 209


>ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
           gi|449504099|ref|XP_004162252.1| PREDICTED:
           chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic-like [Cucumis sativus]
          Length = 874

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
 Frame = -2

Query: 448 ILMYSSSIPFKKRNFYIT---------QNSFRLNSALEKYPPRNSDFMLKSKNCGWNHSV 296
           +L Y SS+ F+ R+F  +          N     S   + P    +         W    
Sbjct: 28  LLKYGSSVVFRNRSFCSSFYGLTTDTFSNGISYGSLSSRTPVYRYNLRRNLSRVSWIDRW 87

Query: 295 ENAYQPKFQKDEQALLDYRMGSDGDVP-------SEYDDSERMKGNGSRTLSSKMGKIVE 137
               +    K  +A+LDY    + +V          Y  S R+  +G     S M KIV 
Sbjct: 88  NETAKRNRPKPPRAVLDYPSSDENEVSISSTGFSKSYRASSRIDDDGRG--GSTMEKIVR 145

Query: 136 KLKGFGYAEEVNETK--ERLPPKKSLEYIFYAEEG---NSQGGFSRESPL 2
           KLK FGY ++ N+ K  ER   K S+E I Y EEG   N++GGFS+ESP+
Sbjct: 146 KLKKFGYIDDENKEKGEERAIEKGSVEDILYIEEGMLPNTRGGFSKESPM 195


>ref|XP_007144072.1| hypothetical protein PHAVU_007G126200g [Phaseolus vulgaris]
           gi|561017262|gb|ESW16066.1| hypothetical protein
           PHAVU_007G126200g [Phaseolus vulgaris]
          Length = 827

 Score = 62.8 bits (151), Expect = 6e-08
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
 Frame = -2

Query: 385 FRLNSALEKYPPRNSDFMLKSKNCGWNHSVENAYQPKFQKDEQALLDYRMGSDGDVPSEY 206
           FR NSA + + P N+   LK     W+H    A Q    +  +A+LDY+   +G      
Sbjct: 46  FRCNSA-KSFSPENN--WLKR----WSHP---ANQQPCPRPPRAVLDYQGSGNGHSSKSG 95

Query: 205 DDSERMKGNGSRTLSSKMGKIVEKLKGFGYAEEVNETKERLPPKKSLEYIFYAEEG---N 35
             S   +G       S M +IVEKLK  GYA +  E K+++  K S+E IFY  EG   N
Sbjct: 96  FSSSDEEGG------SNMNRIVEKLKKIGYAGDGIENKQKVIEKGSVEDIFYVGEGMLPN 149

Query: 34  SQGGFSRESPL 2
           ++GGFS ESPL
Sbjct: 150 ARGGFSPESPL 160


>ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
           truncatula] gi|355479830|gb|AES61033.1| Chloroplastic
           group IIA intron splicing facilitator CRS1 [Medicago
           truncatula]
          Length = 838

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 40/94 (42%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
 Frame = -2

Query: 268 KDEQALLDYRMGSDG-DVPSEYDDSERMKGNGSRTLSSKMGKIVEKLKGFGYAEEVNET- 95
           K  + +L+Y+   +G    S++D S+     GSR     M +IVEKLK FGY  + NE  
Sbjct: 77  KPPRGVLNYQGSGNGHSSKSDFDSSDDEDFGGSR-----MDRIVEKLKKFGYESDENENI 131

Query: 94  -KERLPPKKSLEYIFYAEEG---NSQGGFSRESP 5
            +E +  K S+E IFY EEG   N++GGFS ESP
Sbjct: 132 KEEGVIEKGSMEDIFYVEEGMLPNTRGGFSPESP 165