BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00016547
         (496 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus...    60   4e-07
gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis]      59   9e-07
gb|EXB91952.1| hypothetical protein L484_001826 [Morus notabilis]      55   8e-06

>gb|EXC04356.1| DNA-directed RNA polymerase I subunit rpa1 [Morus notabilis]
          Length = 1770

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 28/52 (53%), Positives = 39/52 (75%)
 Frame = +2

Query: 317  IRKKSLRWF*HMQRKPLTALVRTADDALTILNNCKGRGRPNITWTEMIKKNI 472
            +R+  LRW+ H+QR+PL A VR  +D L I N  +GRGRP ITWTE+++K+I
Sbjct: 1241 VREGRLRWYGHVQRRPLEAPVRAWEDIL-IPNTRRGRGRPRITWTEVVRKDI 1291


>gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis]
          Length = 1413

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
 Frame = +2

Query: 116  KFYKTTTRPAELYRTE**AIKKKMLIN*V*QGKCKF*EGIW*TQKENKKDKRNEYLGN-- 289
            KFY+T  RPA LY ++  AIK++ +         +     W + +      +NE + +  
Sbjct: 957  KFYRTVIRPAMLYGSKCWAIKRQHISK---MSVAEMRMLRWMSGQTRMDRIKNEVIRSKV 1013

Query: 290  GSSGLN*R*IRKKSLRWF*HMQRKPLTALVRTADDALTILNNCKGRGRPNITWTEMI 460
            G + +  + +R+  LRWF H+QR+PL A VR  +D L I N  +GRGR  ITWTE++
Sbjct: 1014 GVAPIEDK-VREGRLRWFGHVQRRPLEAPVRAWEDIL-IPNTRRGRGRLRITWTEIL 1068


>gb|EXB91952.1| hypothetical protein L484_001826 [Morus notabilis]
          Length = 783

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +2

Query: 317 IRKKSLRWF*HMQRKPLTALVRTADDALTILNNCKGRGRPNITWTEMI 460
           +R+  LRW+ H+QR+PL A VR  +D L I N  +GRGRP ITWTE I
Sbjct: 34  VREGRLRWYGHVQRRPLEAQVRAWEDIL-IPNTMRGRGRPRITWTEEI 80