BLASTX nr result
ID: Cocculus22_contig00015994
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00015994
(811 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284465.1| PREDICTED: general transcription factor IIH ... 325 2e-86
ref|XP_002307429.2| basal transcription factor complex subunit-r... 322 8e-86
ref|XP_007019036.1| Basal transcription factor complex subunit-r... 319 7e-85
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ... 312 8e-83
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ... 310 5e-82
ref|XP_007223251.1| hypothetical protein PRUPE_ppa009386mg [Prun... 306 8e-81
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps... 304 3e-80
gb|EYU17663.1| hypothetical protein MIMGU_mgv1a011002mg [Mimulus... 303 5e-80
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ... 300 5e-79
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ... 300 5e-79
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab... 299 7e-79
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ... 299 9e-79
ref|XP_004241513.1| PREDICTED: general transcription factor IIH ... 299 9e-79
ref|NP_564050.1| basal transcription factor complex subunit-rela... 298 1e-78
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr... 297 4e-78
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ... 293 4e-77
ref|XP_004500559.1| PREDICTED: general transcription factor IIH ... 288 2e-75
ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g... 287 3e-75
ref|XP_003601046.1| General transcription factor IIH subunit [Me... 287 4e-75
ref|XP_007137405.1| hypothetical protein PHAVU_009G124300g [Phas... 286 6e-75
>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
product [Vitis vinifera]
Length = 297
Score = 325 bits (832), Expect = 2e-86
Identities = 171/258 (66%), Positives = 179/258 (69%), Gaps = 2/258 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW L FS+FL+H ATG N
Sbjct: 22 TNPFFWSTAS-----LPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSV 76
Query: 223 KIEGS-ENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX-CYIQRV 396
+ EN R+P L S +LQKLEEFV DE+L K CYIQRV
Sbjct: 77 PANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRV 136
Query: 397 FRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY 576
FR+G LHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY
Sbjct: 137 FRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY 196
Query: 577 ITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYIC 756
ITGGVYLKPQ LDGLFQYLST+FATDLHSR FLQLPKP GVDFRASCFCHK TIDMGYIC
Sbjct: 197 ITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYIC 256
Query: 757 SVCLSIFCKHHKKCSTCG 810
SVCLSIFCKHHKKCSTCG
Sbjct: 257 SVCLSIFCKHHKKCSTCG 274
>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
[Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
transcription factor complex subunit-related family
protein [Populus trichocarpa]
Length = 298
Score = 322 bits (826), Expect = 8e-86
Identities = 166/258 (64%), Positives = 184/258 (71%), Gaps = 2/258 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW LSFS+FL+H A+G N
Sbjct: 22 TNPFFW----TPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSD 77
Query: 223 KIE-GSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXXCYIQRV 396
+ GSE+ R+P+LYS +LQKLEEF+I DE+L K + CYIQRV
Sbjct: 78 ASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRV 137
Query: 397 FRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY 576
FRSG LHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC +GA +SAFLQQASY
Sbjct: 138 FRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASY 197
Query: 577 ITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYIC 756
ITGGVY+KPQ LDGLFQYL+T+FATDLHSRSF+QLP+P GVDFRASCFCHK TIDMGYIC
Sbjct: 198 ITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYIC 257
Query: 757 SVCLSIFCKHHKKCSTCG 810
SVCLSIFC HHKKCSTCG
Sbjct: 258 SVCLSIFCNHHKKCSTCG 275
>ref|XP_007019036.1| Basal transcription factor complex subunit-related isoform 1
[Theobroma cacao] gi|508724364|gb|EOY16261.1| Basal
transcription factor complex subunit-related isoform 1
[Theobroma cacao]
Length = 296
Score = 319 bits (818), Expect = 7e-85
Identities = 166/257 (64%), Positives = 178/257 (69%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW LSFS+FL+H ATG N
Sbjct: 22 TNPFFWSASS-----LSFSQFLSHVLAFLNAILTLNQLNQVVVIATGYNSCNYIFDSSSD 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXXCYIQRVF 399
+ EN R+P + S +LQKLEEF+I DE+L K CYIQRVF
Sbjct: 77 LNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPEGRIKSSLLSGSLSMALCYIQRVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG LHP PRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC +GAQ+SAFLQQASYI
Sbjct: 137 RSGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYMGAQNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGV+ KPQ LDGLFQYL TIFATDLHSRSFL LPKPVGVDFRASCFCHK TIDMGYICS
Sbjct: 197 TGGVHHKPQHLDGLFQYLMTIFATDLHSRSFLHLPKPVGVDFRASCFCHKNTIDMGYICS 256
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 257 VCLSIFCKHHKKCSTCG 273
>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 295
Score = 312 bits (800), Expect = 8e-83
Identities = 159/257 (61%), Positives = 178/257 (69%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW L FS+FL+H TG
Sbjct: 22 TNPFFWSTSA-----LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSY 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDER-LEKSNXXXXXXXXXXXXXXXXXCYIQRVF 399
G E+ R+P L +R+L+ LEEFVI DE+ +++ CYIQ+VF
Sbjct: 77 SNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC IG+ +SAFLQQASYI
Sbjct: 137 RSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQ +DGLFQYLST+F TDLHSR+FLQLPK VGVDFRASCFCHKKTIDMGY+CS
Sbjct: 197 TGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCS 256
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 257 VCLSIFCKHHKKCSTCG 273
>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X1 [Citrus sinensis]
Length = 298
Score = 310 bits (793), Expect = 5e-82
Identities = 162/257 (63%), Positives = 176/257 (68%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW LSFS+FL H ATG N
Sbjct: 22 TNPFFWSSSS-----LSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYVYDSSST 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX-CYIQRVF 399
+ N R+P+L + +LQ LEEF+ DE+L K CYIQRVF
Sbjct: 77 GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSGLLHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSC +GAQ+SAFLQQASYI
Sbjct: 137 RSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGV+ KPQ LDGLFQYL TIF TDLHSR+FLQLPKPVGVDFRASCFCHK TIDMGYICS
Sbjct: 197 TGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 256
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSI+CKH KKCSTCG
Sbjct: 257 VCLSIYCKHLKKCSTCG 273
>ref|XP_007223251.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
gi|462420187|gb|EMJ24450.1| hypothetical protein
PRUPE_ppa009386mg [Prunus persica]
Length = 295
Score = 306 bits (783), Expect = 8e-81
Identities = 162/257 (63%), Positives = 176/257 (68%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW L FS FL+H ATG N
Sbjct: 22 TNPFFWSSSS-----LPFSVFLSHVLTFLNSILLLNQLNQVVVIATGYNSCSYIYDSSTS 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX-CYIQRVF 399
+GS+N R+P +LQKLEEFVI DE+L K CYIQRVF
Sbjct: 77 TNQGSDNGRMPARCVNLLQKLEEFVIEDEQLIKEGLREGIASSLLSGSLSMALCYIQRVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG LHPQPRILCLQGS DGPEQYVA+MNAIFSAQRS VPIDSC +G+ +SAFLQQASYI
Sbjct: 137 RSGPLHPQPRILCLQGSSDGPEQYVAIMNAIFSAQRS-VPIDSCYMGSSNSAFLQQASYI 195
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQ +GLFQYLST+FATDLHSR+FLQLPK +GVDFRASCFCHKKTIDMGYICS
Sbjct: 196 TGGVYLKPQQPNGLFQYLSTVFATDLHSRAFLQLPKSLGVDFRASCFCHKKTIDMGYICS 255
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 256 VCLSIFCKHHKKCSTCG 272
>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
gi|482574167|gb|EOA38354.1| hypothetical protein
CARUB_v10009867mg [Capsella rubella]
Length = 301
Score = 304 bits (778), Expect = 3e-80
Identities = 159/261 (60%), Positives = 179/261 (68%), Gaps = 5/261 (1%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW ++FS+FL+H ATG +
Sbjct: 22 TNPFFWSTTS-----ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCEYIYDSSLT 76
Query: 223 KIEGS-ENER--LPTLYSRVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXXCYI 387
GS E +R +P L++ +L KLE+FV DE L E+ N CYI
Sbjct: 77 SNHGSFERDRTGMPPLFASLLNKLEDFVTKDEELSREEGNEDRTPSCLLSGSLSMALCYI 136
Query: 388 QRVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQ 567
QRVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQ
Sbjct: 137 QRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQ 196
Query: 568 ASYITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMG 747
ASYITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKP+GVDFRASCFCHKKTIDMG
Sbjct: 197 ASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMG 256
Query: 748 YICSVCLSIFCKHHKKCSTCG 810
YICSVCLSIFC+HHKKCSTCG
Sbjct: 257 YICSVCLSIFCEHHKKCSTCG 277
>gb|EYU17663.1| hypothetical protein MIMGU_mgv1a011002mg [Mimulus guttatus]
Length = 295
Score = 303 bits (776), Expect = 5e-80
Identities = 161/257 (62%), Positives = 174/257 (67%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW L FS+F++H ATG N
Sbjct: 22 TNPFFWNSVKSN---LPFSKFISHVLAFLNSILLVNQQNQVVVLATGHNSCDYVFDS--- 75
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERL-EKSNXXXXXXXXXXXXXXXXXCYIQRVF 399
+ S+N+R L LQKLEEFV DE L + + CYIQRVF
Sbjct: 76 SVAQSQNQRAEHL----LQKLEEFVDKDESLCREESVDGQGFSLLSGSLSMALCYIQRVF 131
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG LHP PRILCL GSPDGP QYVA+MN+IFSAQRSMVPID+CVIG QHSAFLQQASYI
Sbjct: 132 RSGPLHPHPRILCLHGSPDGPGQYVAIMNSIFSAQRSMVPIDACVIGTQHSAFLQQASYI 191
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQLLDGLFQYLST+FATDLHSR+FLQLPKP GVDFRASCFCHK TIDMGYICS
Sbjct: 192 TGGVYLKPQLLDGLFQYLSTVFATDLHSRAFLQLPKPAGVDFRASCFCHKNTIDMGYICS 251
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKH KKCSTCG
Sbjct: 252 VCLSIFCKHQKKCSTCG 268
>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
2 [Fragaria vesca subsp. vesca]
Length = 298
Score = 300 bits (767), Expect = 5e-79
Identities = 155/257 (60%), Positives = 174/257 (67%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW L FS++L+H ATG +
Sbjct: 22 TNPFFWSSSS-----LPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYIYDSASA 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXXCYIQRVF 399
+GS+ R+P L S +L+KLEEFV DE+L K + CYIQ+VF
Sbjct: 77 PGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG HP PRILCLQGS DGPEQYVA+MNAIFSAQRSMVPIDSC +G+ +SAFLQQASYI
Sbjct: 137 RSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQ DGL QYL+T+FATDLHSR+FLQLPK GVDFRASCFCHKKTID GYICS
Sbjct: 197 TGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTIDTGYICS 256
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 257 VCLSIFCKHHKKCSTCG 273
>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
1 [Fragaria vesca subsp. vesca]
Length = 300
Score = 300 bits (767), Expect = 5e-79
Identities = 155/257 (60%), Positives = 174/257 (67%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW L FS++L+H ATG +
Sbjct: 22 TNPFFWSSSS-----LPFSKYLSHVLTFLNSILLLNQLNQVVVIATGYSSCSYIYDSASA 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKS-NXXXXXXXXXXXXXXXXXCYIQRVF 399
+GS+ R+P L S +L+KLEEFV DE+L K + CYIQ+VF
Sbjct: 77 PGQGSDQGRMPALCSHLLKKLEEFVAKDEQLLKEGSAEGIPSSLLSGSLSMALCYIQKVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG HP PRILCLQGS DGPEQYVA+MNAIFSAQRSMVPIDSC +G+ +SAFLQQASYI
Sbjct: 137 RSGPQHPHPRILCLQGSSDGPEQYVAIMNAIFSAQRSMVPIDSCYMGSNNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQ DGL QYL+T+FATDLHSR+FLQLPK GVDFRASCFCHKKTID GYICS
Sbjct: 197 TGGVYLKPQQPDGLLQYLTTVFATDLHSRAFLQLPKSAGVDFRASCFCHKKTIDTGYICS 256
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 257 VCLSIFCKHHKKCSTCG 273
>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
Length = 301
Score = 299 bits (766), Expect = 7e-79
Identities = 156/261 (59%), Positives = 176/261 (67%), Gaps = 5/261 (1%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNP FW ++FS+FL+H ATG +
Sbjct: 22 TNPLFWSTTS-----ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLT 76
Query: 223 KIEG---SENERLPTLYSRVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXXCYI 387
G S +P L+ +L+KLE+FV DE L E+ + CYI
Sbjct: 77 SNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYI 136
Query: 388 QRVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQ 567
QRVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQ
Sbjct: 137 QRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQ 196
Query: 568 ASYITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMG 747
ASYITGGV+ P+ LDGLFQYL+TIFATDLHSRSF+QLPKP+GVDFRASCFCHKKTIDMG
Sbjct: 197 ASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDMG 256
Query: 748 YICSVCLSIFCKHHKKCSTCG 810
YICSVCLSIFC+HHKKCSTCG
Sbjct: 257 YICSVCLSIFCEHHKKCSTCG 277
>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
tuberosum]
Length = 290
Score = 299 bits (765), Expect = 9e-79
Identities = 155/257 (60%), Positives = 175/257 (68%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNP+FW +F +F++H ATG N
Sbjct: 22 TNPYFWSSMKNTA--FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTS 79
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERL-EKSNXXXXXXXXXXXXXXXXXCYIQRVF 399
++ +E +L+KLE+FV DE L ++ + CYIQRVF
Sbjct: 80 SMQRAEC---------LLEKLEDFVDKDESLSQEDSVDGVGFSLLSGSLSMALCYIQRVF 130
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG LHPQPRILCL GSPDGP QYVAVMN+IFSAQRSMVPIDSCVIG+QHSAFLQQASYI
Sbjct: 131 RSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYI 190
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQ+ DGLFQYLST+FATDLHSRSFLQLP+PVGVDFRASCFCHK TIDMG+ICS
Sbjct: 191 TGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTIDMGFICS 250
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 251 VCLSIFCKHHKKCSTCG 267
>ref|XP_004241513.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
lycopersicum]
Length = 290
Score = 299 bits (765), Expect = 9e-79
Identities = 155/257 (60%), Positives = 175/257 (68%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNP+FW +F +F++H ATG N
Sbjct: 22 TNPYFWSSMKNTA--FTFPKFISHVLAFLNSILLLNQMNQVVVIATGYNSCDYVFDSSTS 79
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERL-EKSNXXXXXXXXXXXXXXXXXCYIQRVF 399
++ +E +L+KLE+FV DE L ++ + CYIQRVF
Sbjct: 80 SMQRAEC---------LLEKLEDFVDKDESLSQEDSVDGVGFSLLSGALSMALCYIQRVF 130
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG LHPQPRILCL GSPDGP QYVAVMN+IFSAQRSMVPIDSCVIG+QHSAFLQQASYI
Sbjct: 131 RSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFSAQRSMVPIDSCVIGSQHSAFLQQASYI 190
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGVYLKPQ+ DGLFQYLST+FATDLHSRSFLQLP+PVGVDFRASCFCHK TIDMG+ICS
Sbjct: 191 TGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQLPRPVGVDFRASCFCHKNTIDMGFICS 250
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFCKHHKKCSTCG
Sbjct: 251 VCLSIFCKHHKKCSTCG 267
>ref|NP_564050.1| basal transcription factor complex subunit-related protein
[Arabidopsis thaliana] gi|21537277|gb|AAM61618.1|
unknown [Arabidopsis thaliana]
gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis
thaliana] gi|332191584|gb|AEE29705.1| basal
transcription factor complex subunit-related protein
[Arabidopsis thaliana]
Length = 301
Score = 298 bits (764), Expect = 1e-78
Identities = 155/261 (59%), Positives = 174/261 (66%), Gaps = 5/261 (1%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNP FW ++FS+FL+H ATG +
Sbjct: 22 TNPLFWSTTS-----ITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLT 76
Query: 223 KIEG---SENERLPTLYSRVLQKLEEFVISDERLEKS--NXXXXXXXXXXXXXXXXXCYI 387
G S +P ++ +L+KLEEFV DE L K + CYI
Sbjct: 77 SNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYI 136
Query: 388 QRVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQ 567
QRVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQ
Sbjct: 137 QRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQ 196
Query: 568 ASYITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMG 747
ASYITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKP+GVDFRASCFCHKKTIDMG
Sbjct: 197 ASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMG 256
Query: 748 YICSVCLSIFCKHHKKCSTCG 810
YICSVCLSIFC+HHKKCSTCG
Sbjct: 257 YICSVCLSIFCEHHKKCSTCG 277
>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
gi|557094384|gb|ESQ34966.1| hypothetical protein
EUTSA_v10008316mg [Eutrema salsugineum]
Length = 300
Score = 297 bits (760), Expect = 4e-78
Identities = 155/260 (59%), Positives = 174/260 (66%), Gaps = 4/260 (1%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW + FS+FL+H ATG +
Sbjct: 22 TNPFFWSTTS-----IKFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLT 76
Query: 223 KIEGSENER--LPTLYSRVLQKLEEFVISDERL--EKSNXXXXXXXXXXXXXXXXXCYIQ 390
E+ +P L+ +L+KLE+F DE L E+ + CYIQ
Sbjct: 77 PNGNFESSGSGMPALFGSLLEKLEDFAAKDEELSKEEEHEDRIASSLLSGSLSMALCYIQ 136
Query: 391 RVFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQA 570
RVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPIDSC IG Q+SAFLQQA
Sbjct: 137 RVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGTQNSAFLQQA 196
Query: 571 SYITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGY 750
SYITGGV+ P+ LDGLFQYL+TIFATDLHSR F+QLPKPVGVDFRASCFCHKKTIDMGY
Sbjct: 197 SYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPVGVDFRASCFCHKKTIDMGY 256
Query: 751 ICSVCLSIFCKHHKKCSTCG 810
ICSVCLSIFC+HHKKCSTCG
Sbjct: 257 ICSVCLSIFCEHHKKCSTCG 276
>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X2 [Citrus sinensis]
Length = 293
Score = 293 bits (751), Expect = 4e-77
Identities = 157/257 (61%), Positives = 171/257 (66%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW LSFS+FL H ATG N
Sbjct: 22 TNPFFWSSSS-----LSFSQFLTHVLAFFNAILTLNQLNQVVVIATGYNSCDYVYDSSST 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX-CYIQRVF 399
+ N R+P+L + +LQ LEEF+ DE+L K CYIQRVF
Sbjct: 77 GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSGLLHPQPR GSPDGPEQYVA+MNAIFSAQRSMVPIDSC +GAQ+SAFLQQASYI
Sbjct: 137 RSGLLHPQPR-----GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 191
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGGV+ KPQ LDGLFQYL TIF TDLHSR+FLQLPKPVGVDFRASCFCHK TIDMGYICS
Sbjct: 192 TGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 251
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSI+CKH KKCSTCG
Sbjct: 252 VCLSIYCKHLKKCSTCG 268
>ref|XP_004500559.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
X2 [Cicer arietinum]
Length = 294
Score = 288 bits (736), Expect = 2e-75
Identities = 145/256 (56%), Positives = 168/256 (65%), Gaps = 1/256 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW FSEFL+ ATG N
Sbjct: 22 TNPFFW-----TTFPFHFSEFLSQVLAFLNSILLLGQLNQLVVIATGCNSCGYIYDSTSN 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX-CYIQRVF 399
+ S N +P LYS +L LEEF+ D++L + CYIQR F
Sbjct: 77 RNHASTNGTMPALYSNLLHNLEEFLARDQKLTMPHAPVTVPSSLLSGSLSMALCYIQRAF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG +HPQPRILCLQGS DGPEQYVA+MNAIFSAQRS VP+DSC IG+ +SAFLQQASYI
Sbjct: 137 RSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSSVPVDSCYIGSNNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGG+Y +P +DGLFQYLST+FATDLHSR+FL+LPK +GVDFRASCFCHK+TIDMGY+CS
Sbjct: 197 TGGIYYRPPQMDGLFQYLSTVFATDLHSRAFLRLPKSLGVDFRASCFCHKQTIDMGYVCS 256
Query: 760 VCLSIFCKHHKKCSTC 807
VCLSIFC+HH KCSTC
Sbjct: 257 VCLSIFCEHHDKCSTC 272
>ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|41053068|dbj|BAD08012.1| putative TFIIH basal
transcription factor complex p34 subunit [Oryza sativa
Japonica Group] gi|113535279|dbj|BAF07662.1|
Os02g0125800 [Oryza sativa Japonica Group]
gi|215768495|dbj|BAH00724.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 289
Score = 287 bits (735), Expect = 3e-75
Identities = 146/259 (56%), Positives = 171/259 (66%), Gaps = 3/259 (1%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNP FW L F++F AH A G++
Sbjct: 20 TNPLFWATAA-----LPFADFFAHLIHYVNSLLLLNHLNHVVVIAAGLSSCTYIFDSSDA 74
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX---CYIQR 393
G+ + + +++ +K++EF+ D R SN CYIQR
Sbjct: 75 SASGAAD--VAATFAKASRKMDEFIAEDARATSSNGSVADGNAASLLSGALSLALCYIQR 132
Query: 394 VFRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQAS 573
VFRSG HPQPRILCLQGSPDGPEQYVAVMN+IFSAQRSMVPIDSC++G Q SAFLQQAS
Sbjct: 133 VFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIVGTQDSAFLQQAS 192
Query: 574 YITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYI 753
YITGGVYLKPQ L+GLFQYL+ +FATDLHSR+FL+LPK +GVDFRASCFCHKKTIDMGY+
Sbjct: 193 YITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASCFCHKKTIDMGYV 252
Query: 754 CSVCLSIFCKHHKKCSTCG 810
CSVCLSIFCK+HKKCSTCG
Sbjct: 253 CSVCLSIFCKYHKKCSTCG 271
>ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490094|gb|AES71297.1| General transcription factor
IIH subunit [Medicago truncatula]
Length = 340
Score = 287 bits (734), Expect = 4e-75
Identities = 144/257 (56%), Positives = 168/257 (65%), Gaps = 2/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW FSEFL+ ATG N
Sbjct: 23 TNPFFWSSFP-----FHFSEFLSQVLAFLNSILLLGQLNQVVVIATGCNSCSYVYDSASD 77
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX--CYIQRV 396
K S N +P +YS +L L+EFV D++L + CYIQR
Sbjct: 78 KNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLLSGALSMALCYIQRA 137
Query: 397 FRSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASY 576
FRSG +HPQPRILCLQGS DGPEQYVA+MNAIFSAQRS+VP+DSC IG+ +SAFLQQASY
Sbjct: 138 FRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCFIGSNNSAFLQQASY 197
Query: 577 ITGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYIC 756
ITGG+Y +P ++GLFQYLST+FATDLHSR FL+LPK +GVDFRASCFCHK+TIDMGY+C
Sbjct: 198 ITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRASCFCHKQTIDMGYVC 257
Query: 757 SVCLSIFCKHHKKCSTC 807
SVCLSIFC+HH KCSTC
Sbjct: 258 SVCLSIFCEHHDKCSTC 274
>ref|XP_007137405.1| hypothetical protein PHAVU_009G124300g [Phaseolus vulgaris]
gi|561010492|gb|ESW09399.1| hypothetical protein
PHAVU_009G124300g [Phaseolus vulgaris]
Length = 292
Score = 286 bits (732), Expect = 6e-75
Identities = 146/257 (56%), Positives = 169/257 (65%), Gaps = 1/257 (0%)
Frame = +1
Query: 43 TNPFFWGXXXXXXXXLSFSEFLAHXXXXXXXXXXXXXXXXXXXXATGVNXXXXXXXXXXX 222
TNPFFW F+EFL+ ATG N
Sbjct: 22 TNPFFW-----TTFPFPFAEFLSQVLAFLNSILLLGQLNQLIVIATGCNSCAYVYDSTSE 76
Query: 223 KIEGSENERLPTLYSRVLQKLEEFVISDERLEKSNXXXXXXXXXXXXXXXXX-CYIQRVF 399
+ GS +P LYS +L L EF+ D++LE S+ CYIQR F
Sbjct: 77 RNHGSTTGTMPALYSNLLHNLHEFLARDKQLEASHKPGTVPSSLLSGSLSMALCYIQRAF 136
Query: 400 RSGLLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 579
RSG + PQPRILCLQG+ DGPEQYVA+MNAIFSAQRS VPIDSC IG+ +SAFLQQASYI
Sbjct: 137 RSGPMPPQPRILCLQGTADGPEQYVAIMNAIFSAQRSTVPIDSCYIGSNNSAFLQQASYI 196
Query: 580 TGGVYLKPQLLDGLFQYLSTIFATDLHSRSFLQLPKPVGVDFRASCFCHKKTIDMGYICS 759
TGG+Y KP LDGL+QYLST+FATDLHSR+FL+LPK VGVDFRASCFCHK+TIDMG++CS
Sbjct: 197 TGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRASCFCHKQTIDMGFVCS 256
Query: 760 VCLSIFCKHHKKCSTCG 810
VCLSIFC+HH KCSTCG
Sbjct: 257 VCLSIFCEHHDKCSTCG 273