BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00015545
         (358 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...    79   5e-13
ref|XP_006488997.1| PREDICTED: putative pentatricopeptide repeat...    75   7e-12
ref|XP_006488870.1| PREDICTED: putative pentatricopeptide repeat...    75   7e-12
ref|XP_006355396.1| PREDICTED: putative pentatricopeptide repeat...    75   1e-11
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...    74   2e-11
ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    74   2e-11
gb|EYU44006.1| hypothetical protein MIMGU_mgv1a002242mg [Mimulus...    74   2e-11
gb|EXB55746.1| hypothetical protein L484_007742 [Morus notabilis]      73   4e-11
ref|XP_006297164.1| hypothetical protein CARUB_v10013169mg [Caps...    73   4e-11
ref|XP_007035741.1| Pentatricopeptide (PPR) domain protein 40, p...    72   8e-11
ref|XP_007224454.1| hypothetical protein PRUPE_ppa022157mg [Prun...    71   2e-10
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...    70   2e-10
ref|XP_002885175.1| pentatricopeptide repeat-containing protein ...    66   6e-09
ref|XP_006406795.1| hypothetical protein EUTSA_v10022362mg [Eutr...    64   2e-08
ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat...    62   1e-07
ref|XP_004299932.1| PREDICTED: putative pentatricopeptide repeat...    61   1e-07

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score = 79.3 bits (194), Expect = 5e-13
 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +3

Query: 99  NMAPLSRNRVSSN--AELLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQ 272
           N   +S N +S+N  ++ +D  YFS ILSR+DW  LLN EFKA + +L+S     +LQNQ
Sbjct: 64  NSLKISNNPISANKYSKPIDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSVASVLQNQ 123

Query: 273 DKPSNSIKFYAWISNFEDKMVKNQSVQ 353
           + P   +KFY W+SN +    K+QSV+
Sbjct: 124 ENPLYPLKFYIWVSNMDPLFAKDQSVK 150


>ref|XP_006488997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Citrus sinensis]
          Length = 740

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
 Frame = +3

Query: 99  NMAPLSRNRVS--SNAELLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQ 272
           N   LS N VS  S+ +L+D  Y S  L+R DW  LL+ E KA + +L  ++AV ILQNQ
Sbjct: 74  NFVTLSSNHVSPHSDVKLIDHHYISQALARKDWFLLLSHELKANRINLVPRVAVSILQNQ 133

Query: 273 DKPSNSIKFYAWISNFEDKMVKNQSVQ 353
           + P +S++FY W SN    + K+QSV+
Sbjct: 134 ENPIHSLRFYIWASNINLLLAKDQSVK 160


>ref|XP_006488870.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Citrus sinensis]
          Length = 721

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
 Frame = +3

Query: 99  NMAPLSRNRVS--SNAELLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQ 272
           N   LS N VS  S+ +L+D  Y S  L+R DW  LL+ E KA + +L  ++AV ILQNQ
Sbjct: 74  NFVTLSSNHVSPHSDVKLIDHHYISQALARKDWFLLLSHELKANRINLVPRVAVSILQNQ 133

Query: 273 DKPSNSIKFYAWISNFEDKMVKNQSVQ 353
           + P +S++FY W SN    + K+QSV+
Sbjct: 134 ENPIHSLRFYIWASNINLLLAKDQSVK 160


>ref|XP_006355396.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like isoform X1 [Solanum
           tuberosum] gi|565377884|ref|XP_006355397.1| PREDICTED:
           putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like isoform X2 [Solanum
           tuberosum]
          Length = 709

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 39/109 (35%), Positives = 60/109 (55%)
 Frame = +3

Query: 27  ASPKAPSRVKGSPQSHGSLTGFEQNMAPLSRNRVSSNAELLDLQYFSDILSRNDWVFLLN 206
           A+   P   + SP        +  N + ++  +V+  A ++D +YFS IL+R DW  LLN
Sbjct: 41  ATTSNPITQQSSPSKPKPSFNWNSNTS-IAAKKVNFRASVIDHKYFSQILARKDWYLLLN 99

Query: 207 DEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFEDKMVKNQSVQ 353
            E+KA + +L+ Q  V ILQNQ+ P +  +FY W+        KNQSV+
Sbjct: 100 HEYKAKRVTLNQQEVVSILQNQENPLHPFRFYIWVLKICPSFAKNQSVK 148


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
 Frame = +3

Query: 36  KAPSRVKGSPQSHG--SLTGFEQNMAP-LSRNRVSSNAELLDLQYFSDILSRNDWVFLLN 206
           +APSR   SP +    + +  + +  P L+ ++ S + + +D  Y S IL   DW  LLN
Sbjct: 51  EAPSRGNPSPLTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKDWFLLLN 110

Query: 207 DEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFEDKMVKNQSVQ 353
            EFKA +  L  Q  V ILQNQD P ++I+FY W+SN +  +VK Q +Q
Sbjct: 111 HEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQ 159


>ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g16890, mitochondrial-like
           [Cucumis sativus]
          Length = 688

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
 Frame = +3

Query: 36  KAPSRVKGSPQSHG--SLTGFEQNMAP-LSRNRVSSNAELLDLQYFSDILSRNDWVFLLN 206
           +APSR   SP +    + +  + +  P L+ ++ S + + +D  Y S IL   DW  LLN
Sbjct: 51  EAPSRGNPSPLTTPLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYISKILLSKDWFLLLN 110

Query: 207 DEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFEDKMVKNQSVQ 353
            EFKA +  L  Q  V ILQNQD P ++I+FY W+SN +  +VK Q +Q
Sbjct: 111 HEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQLIQ 159


>gb|EYU44006.1| hypothetical protein MIMGU_mgv1a002242mg [Mimulus guttatus]
          Length = 696

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 33/68 (48%), Positives = 48/68 (70%)
 Frame = +3

Query: 147 LDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFED 326
           +D +YF++ILSR DW  LL+ EFKA + +L  Q+AV IL NQDK    ++FY W+S+F  
Sbjct: 79  IDHRYFAEILSRKDWYLLLSHEFKAQRINLSPQIAVSILHNQDKGLAPLRFYVWLSSFNA 138

Query: 327 KMVKNQSV 350
            + KN+S+
Sbjct: 139 LLAKNKSI 146


>gb|EXB55746.1| hypothetical protein L484_007742 [Morus notabilis]
          Length = 882

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 31/80 (38%), Positives = 53/80 (66%)
 Frame = +3

Query: 117 RNRVSSNAELLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIK 296
           +N  ++N  L+D +Y + +LS +DWV LL  E K+ + SL+ +  V +LQNQ+ P   ++
Sbjct: 60  KNNTNNNNSLVDHRYITRVLSSHDWVVLLTHELKSKRVSLNPRFVVSVLQNQENPLLPLR 119

Query: 297 FYAWISNFEDKMVKNQSVQR 356
           FY W+S+ +  + +NQSV+R
Sbjct: 120 FYLWVSSVDPSLTRNQSVRR 139


>ref|XP_006297164.1| hypothetical protein CARUB_v10013169mg [Capsella rubella]
           gi|482565873|gb|EOA30062.1| hypothetical protein
           CARUB_v10013169mg [Capsella rubella]
          Length = 654

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +3

Query: 99  NMAPLSR-NRVSSNAELLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQD 275
           N+ P+   N      + LD +Y S ++ R DW  LLN EF   +  L+++  + +LQNQD
Sbjct: 23  NLKPIKTLNSSGKPTKPLDQRYISQVIERKDWFLLLNQEFTIHRIGLNARFVISVLQNQD 82

Query: 276 KPSNSIKFYAWISNFEDKMVKNQSVQ 353
            P +S++FY W+SNF+    K+QS++
Sbjct: 83  NPLHSLRFYLWVSNFDPVYAKDQSLK 108


>ref|XP_007035741.1| Pentatricopeptide (PPR) domain protein 40, putative [Theobroma
           cacao] gi|508714770|gb|EOY06667.1| Pentatricopeptide
           (PPR) domain protein 40, putative [Theobroma cacao]
          Length = 679

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = +3

Query: 159 YFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFEDKMVK 338
           Y S ILSRNDW  LLN E KA +  L+ Q  V +LQNQ+ P   ++FY W+SN +    K
Sbjct: 54  YISQILSRNDWFLLLNHELKAKRIVLNPQFVVSLLQNQENPLYPLRFYIWVSNIDPLFAK 113

Query: 339 NQSVQ 353
           NQSV+
Sbjct: 114 NQSVK 118


>ref|XP_007224454.1| hypothetical protein PRUPE_ppa022157mg [Prunus persica]
           gi|462421390|gb|EMJ25653.1| hypothetical protein
           PRUPE_ppa022157mg [Prunus persica]
          Length = 604

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 37/113 (32%), Positives = 57/113 (50%)
 Frame = +3

Query: 15  DGISASPKAPSRVKGSPQSHGSLTGFEQNMAPLSRNRVSSNAELLDLQYFSDILSRNDWV 194
           D + A  K  S        + +L     N      ++   + + +D  Y + ILSR DW 
Sbjct: 46  DNVGAPLKGNSPKPNFEPQNPNLVSISTNPISAVNHKFRIDNKRIDHLYIAQILSRKDWF 105

Query: 195 FLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFEDKMVKNQSVQ 353
            LL+ E KA +  L+ Q    +LQNQ+ P +S+KFY W+S+ +    KNQSV+
Sbjct: 106 LLLDHELKAKRIFLNPQFVASVLQNQESPLHSLKFYIWVSSTDSLFAKNQSVR 158


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g16890, mitochondrial; AltName: Full=Protein
           PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
           gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
           [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 659

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
 Frame = +3

Query: 45  SRVKGSPQSHGSLTGFEQNMAPLSRNRVSSNAEL--LDLQYFSDILSRNDWVFLLNDEFK 218
           SR+  +  +  SL         LS+   SS      L+ +Y S ++ R DW  +LN EF 
Sbjct: 9   SRIATAAAASKSLNASTSVNPKLSKTLNSSGKPTNPLNQRYISQVIERKDWFLILNQEFT 68

Query: 219 AGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFEDKMVKNQSVQ 353
             +  L+++  + +LQNQD P +S++FY W+SNF+    K+QS++
Sbjct: 69  THRIGLNTRFVISVLQNQDNPLHSLRFYLWVSNFDPVYAKDQSLK 113


>ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331015|gb|EFH61434.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 653

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 26/69 (37%), Positives = 44/69 (63%)
 Frame = +3

Query: 147 LDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFED 326
           L+ +Y S ++ R DW  +LN EF   +  L+ +  + +LQNQD P +S++FY W+SN + 
Sbjct: 39  LNQRYISQVIERKDWFLILNQEFTTHRIGLNIRFVISVLQNQDNPLHSLRFYLWVSNTDP 98

Query: 327 KMVKNQSVQ 353
              K+QS++
Sbjct: 99  VYAKDQSLK 107


>ref|XP_006406795.1| hypothetical protein EUTSA_v10022362mg [Eutrema salsugineum]
           gi|557107941|gb|ESQ48248.1| hypothetical protein
           EUTSA_v10022362mg [Eutrema salsugineum]
          Length = 644

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 25/69 (36%), Positives = 44/69 (63%)
 Frame = +3

Query: 147 LDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFED 326
           +D +Y S I+ R DW  +L  EF A +  L+ +  + +LQNQ+ P +S++FY W+SN + 
Sbjct: 40  IDRRYISQIIGRKDWFLVLKQEFSAHRIGLNHRFVISVLQNQENPLHSLRFYLWVSNTDP 99

Query: 327 KMVKNQSVQ 353
              ++QS++
Sbjct: 100 VYARDQSLK 108


>ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like isoform X1 [Glycine max]
           gi|571473276|ref|XP_006585877.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein At3g16890,
           mitochondrial-like isoform X2 [Glycine max]
          Length = 678

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 31/83 (37%), Positives = 46/83 (55%)
 Frame = +3

Query: 108 PLSRNRVSSNAELLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSN 287
           PL     S ++  +D  Y S +LSR DW  LLN +  +    L+   AV I QNQ  PS+
Sbjct: 31  PLQTPPSSPSSPPIDHLYISQLLSRPDWAVLLNHDLSSKTLLLNPSYAVSIFQNQQNPSH 90

Query: 288 SIKFYAWISNFEDKMVKNQSVQR 356
           +IKF++W+S+    +  + SV R
Sbjct: 91  AIKFHSWLSHVNPTLAAHNSVHR 113


>ref|XP_004299932.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Fragaria vesca subsp.
           vesca]
          Length = 674

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +3

Query: 144 LLDLQYFSDILSRNDWVFLLNDEFKAGKSSLDSQLAVRILQNQDKPSNSIKFYAWISNFE 323
           ++D  Y + +LSR DW  LL+ E  A +  L  Q    +LQNQ+ P + +KF  W SN E
Sbjct: 50  VIDHLYIARVLSRKDWFLLLDHELNARRILLTPQSVASVLQNQENPLHPLKFSIWFSNVE 109

Query: 324 DKMVKNQSVQ 353
              +KNQSV+
Sbjct: 110 PLFLKNQSVR 119