BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00014359
         (1293 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI33284.3| unnamed protein product [Vitis vinifera]              275   3e-71
ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III s...   275   3e-71
ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III s...   274   7e-71
ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III s...   273   9e-71
gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Mor...   263   9e-68
ref|XP_007139345.1| hypothetical protein PHAVU_008G021700g [Phas...   260   1e-66
ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Popu...   259   1e-66
emb|CBI36309.3| unnamed protein product [Vitis vinifera]              257   7e-66
ref|XP_006427248.1| hypothetical protein CICLE_v10026399mg [Citr...   257   9e-66
ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III s...   255   3e-65
ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III s...   255   3e-65
ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, p...   254   8e-65
ref|XP_007208807.1| hypothetical protein PRUPE_ppa024742mg [Prun...   253   1e-64
dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]                          253   1e-64
ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III s...   253   1e-64
ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III s...   253   2e-64
ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Popu...   251   4e-64
ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III s...   248   5e-63
ref|XP_007023168.1| DNA-directed RNA polymerase III subunit rpc6...   244   5e-62
ref|XP_004303315.1| PREDICTED: DNA-directed RNA polymerase III s...   239   1e-60

>emb|CBI33284.3| unnamed protein product [Vitis vinifera]
          Length = 300

 Score =  275 bits (703), Expect = 3e-71
 Identities = 135/232 (58%), Positives = 171/232 (73%), Gaps = 6/232 (2%)
 Frame = +1

Query: 34  SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQD 213
           SLKRKRPD  + SQ L +AER +Y+ IRSKE +GI+  D+KRETNL D +  KS+K+LQ 
Sbjct: 69  SLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQV 128

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
            KL+KEV +  +KG+K++MAVEFEP+ E+TGG WY  G+LD ++I  LKK C   +SKLK
Sbjct: 129 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLK 188

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT EGI E I K  L   EC T+QI EI+ ALVLDNE++EVRS+  G++++IP G +CY
Sbjct: 189 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 248

Query: 574 KPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           +   K       P +GA+ SIPCGVCPRI +CTPDGIISP TC YYTKWLDF
Sbjct: 249 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 300


>ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  275 bits (703), Expect = 3e-71
 Identities = 135/232 (58%), Positives = 171/232 (73%), Gaps = 6/232 (2%)
 Frame = +1

Query: 34  SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQD 213
           SLKRKRPD  + SQ L +AER +Y+ IRSKE +GI+  D+KRETNL D +  KS+K+LQ 
Sbjct: 8   SLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQV 67

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
            KL+KEV +  +KG+K++MAVEFEP+ E+TGG WY  G+LD ++I  LKK C   +SKLK
Sbjct: 68  KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLK 127

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT EGI E I K  L   EC T+QI EI+ ALVLDNE++EVRS+  G++++IP G +CY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187

Query: 574 KPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           +   K       P +GA+ SIPCGVCPRI +CTPDGIISP TC YYTKWLDF
Sbjct: 188 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239


>ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  274 bits (700), Expect = 7e-71
 Identities = 134/233 (57%), Positives = 172/233 (73%), Gaps = 6/233 (2%)
 Frame = +1

Query: 31  LSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQ 210
           LSLKRKRPD  + SQ L +AER +Y+ IRSKE +GI+  D+KRETNL D +  KS+K+LQ
Sbjct: 7   LSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQ 66

Query: 211 DNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKL 390
             KL+KEV +  +KG+K++MAVEFEP+ E+TGG WY  G+LD ++I  LK+ C   +SKL
Sbjct: 67  VKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKL 126

Query: 391 KVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLC 570
           KVAT EGI E I K  L   EC T+QI EI+ ALVLDNE++EVRS+  G++++IP G +C
Sbjct: 127 KVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVC 186

Query: 571 YKPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           Y+   K       PK+GA+ SIPCGVCPRI +CTPDGIISP +C YY KWLDF
Sbjct: 187 YRCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSCAYYAKWLDF 239


>ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
           vinifera]
          Length = 239

 Score =  273 bits (699), Expect = 9e-71
 Identities = 134/232 (57%), Positives = 171/232 (73%), Gaps = 6/232 (2%)
 Frame = +1

Query: 34  SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQD 213
           SLKRKRPD  + SQ L +AER +Y+ IRSKE +GI+  D+KRETNL D +  KS+K+LQ 
Sbjct: 8   SLKRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQV 67

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
            KL+KEV +  +KG+K++MAVEFEP+ E+TGG WY  G+LD ++I  LK+ C   +SKLK
Sbjct: 68  KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVLSKLK 127

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT EGI E I K  L   EC T+QI EI+ ALVLDNE++EVRS+  G++++IP G +CY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187

Query: 574 KPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           +   K       P +GA+ SIPCGVCPRI +CTPDGIISP TC YYTKWLDF
Sbjct: 188 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239


>gb|EXB67305.1| DNA-directed RNA polymerase III subunit RPC6 [Morus notabilis]
          Length = 238

 Score =  263 bits (673), Expect = 9e-68
 Identities = 130/238 (54%), Positives = 172/238 (72%), Gaps = 4/238 (1%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M R ++  SLKRK+PD +SP   L+E ER IY  IRSK+ +GI++ D+KR   + D +  
Sbjct: 1   MSRLQEPSSLKRKQPDSRSPLDSLTEHERIIYNVIRSKQDMGIWMQDMKRVAKVPDNVAN 60

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           K++KSL+  KL+KEV +   +GKK+++A EFEPA E+TGG WYSNG +D   IN LK  C
Sbjct: 61  KALKSLETKKLIKEVVNIQKRGKKHYVAAEFEPATEITGGAWYSNGKMDFVVINILKDQC 120

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
              I K +VAT+EGIL+ IRK  + +VE  T QI+E+V ALVLDNEV+EV+S  MG++ +
Sbjct: 121 LKWIYKQRVATLEGILDAIRKSGISNVELTTVQIEELVRALVLDNEVVEVKSNGMGEFDS 180

Query: 550 IPFGTLCYKPAKK----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           IP G +CYK   K     PK+GA++SIPCGVCPRI +CTPDGIISP TC YY++WLDF
Sbjct: 181 IPVGKVCYKSTSKGSRGDPKIGAMSSIPCGVCPRISDCTPDGIISPKTCKYYSQWLDF 238


>ref|XP_007139345.1| hypothetical protein PHAVU_008G021700g [Phaseolus vulgaris]
           gi|561012478|gb|ESW11339.1| hypothetical protein
           PHAVU_008G021700g [Phaseolus vulgaris]
          Length = 239

 Score =  260 bits (664), Expect = 1e-66
 Identities = 127/239 (53%), Positives = 170/239 (71%), Gaps = 5/239 (2%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M + +++ SLKRKR D    S  +++ ER +Y  I SK+ +GI+ GD+KRETNL D + K
Sbjct: 1   MSQLQESSSLKRKRQDLALVSGSMTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVK 60

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           KS+K LQ   L+KEV +  NKG+K++MA EFEP+ E+TGG WY+ GSLD DFIN +K+ C
Sbjct: 61  KSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGDWYTQGSLDTDFINLVKEVC 120

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
             CI + KVAT +G+LE  RK  +  VE   +QI EI+ ALVLD+E+ EV+ST +GD+++
Sbjct: 121 LKCIFRQKVATHDGVLEWSRKSGVFTVEVTAQQIDEILRALVLDDEIEEVKSTGLGDFSS 180

Query: 550 IPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           +P G +CY+   K       K GA+ SIPCGVCPRI+ CTPDGIISP TC+YY KWLDF
Sbjct: 181 VPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239


>ref|XP_002324707.1| hypothetical protein POPTR_0018s04220g [Populus trichocarpa]
           gi|222866141|gb|EEF03272.1| hypothetical protein
           POPTR_0018s04220g [Populus trichocarpa]
          Length = 239

 Score =  259 bits (663), Expect = 1e-66
 Identities = 125/239 (52%), Positives = 169/239 (70%), Gaps = 5/239 (2%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M R +   SLKRKRP+  SP+Q L+E ER +Y+ IRSK+ +GI+  D+K+E  L D +  
Sbjct: 1   MSRLQGPSSLKRKRPEVNSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVN 60

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           KS+K+LQ  KL+KEV +  NKG+K+FMA EFEP+ E++GG WY  GSLD +FI +LK+ C
Sbjct: 61  KSLKALQVKKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLC 120

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
              I +  VAT+E + + I      +V+   +QI+EI+  L+LDN ++EV+S  MG++A+
Sbjct: 121 KRQIERRGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFAS 180

Query: 550 IPFGTLCYKPAKKL-----PKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           IPFG +CYK   K+     PK GAL SIPCGVCPRI +CTPDGIISP TC+YY KWLDF
Sbjct: 181 IPFGEVCYKYISKVGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLDF 239


>emb|CBI36309.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  257 bits (657), Expect = 7e-66
 Identities = 127/227 (55%), Positives = 167/227 (73%), Gaps = 6/227 (2%)
 Frame = +1

Query: 31  LSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQ 210
           LSLKRKRPD  + SQ L +AER +Y+ IRSKE +GI+  D+KRETNL D +  KS+K+LQ
Sbjct: 97  LSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQ 156

Query: 211 DNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKL 390
             KL+KEV +  +KG+K++MAVEFEP+ E+TGG WY  G+LD ++I  LK+ C   +SKL
Sbjct: 157 VKKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKL 216

Query: 391 KVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLC 570
           KVAT EGI E I K  L   EC T+QI EI+ ALVLDNE++EVRS+  G++++IP G +C
Sbjct: 217 KVATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVC 276

Query: 571 YKPAKK------LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYY 693
           Y+   K       PK+GA+ SIPCGVCPRI +CTPDGIISP + ++Y
Sbjct: 277 YRCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSSVHY 323


>ref|XP_006427248.1| hypothetical protein CICLE_v10026399mg [Citrus clementina]
           gi|557529238|gb|ESR40488.1| hypothetical protein
           CICLE_v10026399mg [Citrus clementina]
          Length = 233

 Score =  257 bits (656), Expect = 9e-66
 Identities = 127/231 (54%), Positives = 165/231 (71%), Gaps = 7/231 (3%)
 Frame = +1

Query: 40  KRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRE--TNLSDPLFKKSIKSLQD 213
           KRKRPD  +PS  L++ ER IY+ IRSK+ +GI+  D+KRE   NL D +  KSIKSLQ+
Sbjct: 3   KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
             L+KEV +  +KGKK+ MAVEFEP+ E++GG WYS GSLD +FI  +K  C   I KLK
Sbjct: 63  KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT+EGI + I++     V+   +QI+EIV ALVLDN+++EV+S   G++ NIP G +CY
Sbjct: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182

Query: 574 KPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           K   K      PK G+L SIPCGVCP+I+ C PDG+ISP TC+YYTKWLDF
Sbjct: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233


>ref|XP_006465349.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Citrus sinensis]
          Length = 233

 Score =  255 bits (652), Expect = 3e-65
 Identities = 126/231 (54%), Positives = 165/231 (71%), Gaps = 7/231 (3%)
 Frame = +1

Query: 40  KRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRE--TNLSDPLFKKSIKSLQD 213
           KRKRP+  +PS  L++ ER IY+ IRSK+ +GI+  D+KRE   NL D +  KSIKSLQ+
Sbjct: 3   KRKRPESNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
             L+KEV +  +KGKK+ MAVEFEP+ E++GG WYS GSLD +FI  +K  C   I KLK
Sbjct: 63  KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT+EGI + I++     V+   +QI+EIV ALVLDN+++EV+S   G++ NIP G +CY
Sbjct: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182

Query: 574 KPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           K   K      PK G+L SIPCGVCP+I+ CTPDG+ISP TC+YYT WLDF
Sbjct: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICTPDGVISPKTCVYYTTWLDF 233


>ref|XP_006475958.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           isoform X1 [Citrus sinensis]
          Length = 252

 Score =  255 bits (651), Expect = 3e-65
 Identities = 128/244 (52%), Positives = 170/244 (69%), Gaps = 8/244 (3%)
 Frame = +1

Query: 4   YYMGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRS-KEGLGIFLGDIKRE--TNLS 174
           Y +G  + +   KRKRPD  +PS  L++ ER IY+ IRS K+ +GI+  D+KRE   NL 
Sbjct: 9   YLLGLAKGSGMSKRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLP 68

Query: 175 DPLFKKSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINT 354
           D +  KSIKSLQ+  L+KEV +  NKGKK+ MAVEFEP+ E++GG WYS GSLD +FI  
Sbjct: 69  DNIVTKSIKSLQNKSLIKEVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKV 128

Query: 355 LKKACSMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEM 534
           +K  C   I KLKVAT+EGI + I++     V+   +QI+EIV A+VLDN+++EV+S   
Sbjct: 129 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGS 188

Query: 535 GDYANIPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTK 699
           G++ NIP G +CYK   K      PK G+  S+PCGVCP+I+ CTPDG+ISP TC+YYTK
Sbjct: 189 GEFTNIPVGKVCYKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTK 248

Query: 700 WLDF 711
           WLDF
Sbjct: 249 WLDF 252


>ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
           communis] gi|223549406|gb|EEF50894.1| DNA-directed RNA
           polymerase III subunit F, putative [Ricinus communis]
          Length = 236

 Score =  254 bits (648), Expect = 8e-65
 Identities = 122/231 (52%), Positives = 167/231 (72%), Gaps = 5/231 (2%)
 Frame = +1

Query: 34  SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQD 213
           +LKRK+P+  SP+Q L+E E  +Y  I SK+ +GI+  D+KRETNL D +  KS+K LQ 
Sbjct: 6   ALKRKQPESSSPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVVNKSLKVLQA 65

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
             L+KEV +  NKG+K++MA EFEP+ E+TGG WY  G+LD +FI  LK+ C+  + KLK
Sbjct: 66  KNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKLK 125

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT+EGI + I++  + + E   +QI+EIV ALVLDN ++EV+S  M +++ IP G +CY
Sbjct: 126 VATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFSFIPIGKVCY 185

Query: 574 KPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           K   K      P++GA+ SIPCGVCPRI +CTPDGIISP TC+YY+KWLDF
Sbjct: 186 KCVGKGSTAGEPRIGAMASIPCGVCPRISQCTPDGIISPQTCVYYSKWLDF 236


>ref|XP_007208807.1| hypothetical protein PRUPE_ppa024742mg [Prunus persica]
           gi|462404542|gb|EMJ10006.1| hypothetical protein
           PRUPE_ppa024742mg [Prunus persica]
          Length = 236

 Score =  253 bits (647), Expect = 1e-64
 Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 5/231 (2%)
 Frame = +1

Query: 34  SLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQD 213
           +LKRK+PD  SPS+ L+E E+ +Y  IRSK+ +GI+  D+K+E NL D L  KSIKSLQ 
Sbjct: 6   ALKRKQPDSSSPSESLTEHEKIVYSVIRSKQDMGIWTRDMKKEANLPDNLVGKSIKSLQA 65

Query: 214 NKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLK 393
             L+KEV +  +KG+K++MA EFEP+ E+TGG WYSNG+LD  +I+ +K   +  I +LK
Sbjct: 66  KNLIKEVVNVQSKGRKHYMAAEFEPSKELTGGDWYSNGTLDKYYISCVKDGFAKIIYQLK 125

Query: 394 VATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCY 573
           VAT+EGI + ++K  +       +QI+EI+  LVLD  V EV+ST MG++ + P G +CY
Sbjct: 126 VATLEGISDEVKKSGIFKTSFTKQQIEEILRVLVLDKRVTEVKSTGMGEFGSFPVGKVCY 185

Query: 574 KP-----AKKLPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           K      +K+ PKVGA+ SIPCGVCPRI +CTPDGIISP TC+Y+TKWLDF
Sbjct: 186 KSTSKGGSKREPKVGAMASIPCGVCPRISQCTPDGIISPRTCVYFTKWLDF 236


>dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
          Length = 235

 Score =  253 bits (647), Expect = 1e-64
 Identities = 123/228 (53%), Positives = 161/228 (70%), Gaps = 4/228 (1%)
 Frame = +1

Query: 40  KRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKSLQDNK 219
           KRK+P+  S +Q L+E E+ +Y  IRSK+ +GI+  D+KRETNL D +  KS+K LQ   
Sbjct: 8   KRKQPESNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRETNLPDTVVNKSLKVLQAKN 67

Query: 220 LVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKLKVA 399
           L+KEV +  NKG+KY+MA EFEP+ E+TGGTWY  G+LD  FI  LK  C   I KLKVA
Sbjct: 68  LIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQCKKQIEKLKVA 127

Query: 400 TIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLCYKP 579
           T+E + + I +  +  V    +QI+EI+ ALVLDN+V EV+S  MG++A+IP G +CYK 
Sbjct: 128 TVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFASIPVGKVCYKS 187

Query: 580 AKK----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
             K     PK+GA+ SIPCGVCPRI  CTP+GIISP TC+YY KWL+F
Sbjct: 188 IGKGSSGDPKIGAMASIPCGVCPRIKHCTPNGIISPQTCVYYGKWLEF 235


>ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Glycine max]
          Length = 239

 Score =  253 bits (646), Expect = 1e-64
 Identities = 124/239 (51%), Positives = 166/239 (69%), Gaps = 5/239 (2%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M   + + SLKRKR D    +  L++ ER +Y  I SK+ +GI+ GD+KRETNL D + K
Sbjct: 1   MSHLQGSSSLKRKRQDLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVK 60

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           KS+K LQ   L+KEV +  NKG+K++MA EFEP+ E+TGG WY+ G LD DFIN +K  C
Sbjct: 61  KSLKLLQSKNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVC 120

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
              I + KVAT +G++E  RK  + +VE  T+QI EI+  LVLD+E++EV+ST  GD+++
Sbjct: 121 LKYIFRQKVATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSS 180

Query: 550 IPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           +P G +CY+   K       K GA+ SIPCGVCPRI+ CTPDGIISP TC+YY KWLDF
Sbjct: 181 VPVGRICYRCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239


>ref|XP_006475959.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           isoform X2 [Citrus sinensis]
          Length = 234

 Score =  253 bits (645), Expect = 2e-64
 Identities = 126/232 (54%), Positives = 165/232 (71%), Gaps = 8/232 (3%)
 Frame = +1

Query: 40  KRKRPDEKSPSQRLSEAERKIYECIRS-KEGLGIFLGDIKRE--TNLSDPLFKKSIKSLQ 210
           KRKRPD  +PS  L++ ER IY+ IRS K+ +GI+  D+KRE   NL D +  KSIKSLQ
Sbjct: 3   KRKRPDSNAPSDSLTDHERLIYDVIRSNKQDMGIWTRDMKRELKVNLPDNIVTKSIKSLQ 62

Query: 211 DNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCISKL 390
           +  L+KEV +  NKGKK+ MAVEFEP+ E++GG WYS GSLD +FI  +K  C   I KL
Sbjct: 63  NKSLIKEVVNIHNKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 122

Query: 391 KVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGTLC 570
           KVAT+EGI + I++     V+   +QI+EIV A+VLDN+++EV+S   G++ NIP G +C
Sbjct: 123 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAVVLDNQIMEVKSNGSGEFTNIPVGKVC 182

Query: 571 YKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           YK   K      PK G+  S+PCGVCP+I+ CTPDG+ISP TC+YYTKWLDF
Sbjct: 183 YKNVSKGGGGGEPKTGSSASVPCGVCPQINFCTPDGVISPKTCVYYTKWLDF 234


>ref|XP_002297621.2| hypothetical protein POPTR_0001s04090g [Populus trichocarpa]
           gi|550346475|gb|EEE82426.2| hypothetical protein
           POPTR_0001s04090g [Populus trichocarpa]
          Length = 291

 Score =  251 bits (642), Expect = 4e-64
 Identities = 122/239 (51%), Positives = 165/239 (69%), Gaps = 5/239 (2%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M R +   SLKRKRP+  SP Q L+E ER +Y+ IRSK+ +GI+  D+K+E  L D +  
Sbjct: 53  MSRVQGPSSLKRKRPELNSPVQSLTEHERILYDVIRSKQDIGIWTRDMKKEAKLPDNVVN 112

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           KS+K+L+   L+KEV +  NKG+K+FMA EFEP+ E++GG WY  GSLD +FI +L++ C
Sbjct: 113 KSLKALRVKNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQLC 172

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
              I K  VAT+E + + I      +V+   +QI+EI+  L+LDN ++EV+S  MG++A+
Sbjct: 173 KRQIEKKGVATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEFAS 232

Query: 550 IPFGTLCYKPAKK-----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           IPFG +CY+   K      PK GAL SIPCGVCPRI  CTPDGIISP TC+YY KWLDF
Sbjct: 233 IPFGKVCYRYISKGALGGEPKAGALASIPCGVCPRISHCTPDGIISPKTCVYYQKWLDF 291


>ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
           [Cucumis sativus] gi|449506569|ref|XP_004162785.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           RPC6-like [Cucumis sativus]
          Length = 243

 Score =  248 bits (632), Expect = 5e-63
 Identities = 124/235 (52%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
 Frame = +1

Query: 34  SLKRKRPD---EKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFKKSIKS 204
           SLKRKRPD   + S    L   E+ +Y+ I SK+ +GI   D+KRET  ++ +  KS+KS
Sbjct: 9   SLKRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKS 68

Query: 205 LQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKACSMCIS 384
           LQ   L+K V HY NKGKK++++ +FEPA E+TGG WY +G LD D+INTLK+ C+  I 
Sbjct: 69  LQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ 128

Query: 385 KLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYANIPFGT 564
           + K+ TIEGI+E  ++     VE   EQI+EIV+ALVLDN+V+EV+S+  G++  IP G 
Sbjct: 129 RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 188

Query: 565 LCYK------PAKKLPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           +CYK        K  PK GA+ SIPCGVCPRI  CTP+GIISP TC+YYTKWLDF
Sbjct: 189 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243


>ref|XP_007023168.1| DNA-directed RNA polymerase III subunit rpc6, putative isoform 1
           [Theobroma cacao] gi|590615245|ref|XP_007023169.1|
           DNA-directed RNA polymerase III subunit rpc6, putative
           isoform 1 [Theobroma cacao] gi|508778534|gb|EOY25790.1|
           DNA-directed RNA polymerase III subunit rpc6, putative
           isoform 1 [Theobroma cacao] gi|508778535|gb|EOY25791.1|
           DNA-directed RNA polymerase III subunit rpc6, putative
           isoform 1 [Theobroma cacao]
          Length = 237

 Score =  244 bits (624), Expect = 5e-62
 Identities = 123/239 (51%), Positives = 166/239 (69%), Gaps = 5/239 (2%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M R +   +LKRKRP   S S  L+E ER +++ I+ K+ +GI   D+KRE NL D L  
Sbjct: 1   MSRLQGPNALKRKRPGATSDS--LTEHERIVHDVIQGKQDMGISQRDMKREINLPDNLVT 58

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           K +KSL    L+KEV +  N+G+K+F++ EFEP++E+TGG WY  GSLD ++IN LK+ C
Sbjct: 59  KCLKSLLAKNLIKEVKNIQNRGRKHFISAEFEPSNEITGGAWYVEGSLDTEYINVLKEQC 118

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
              I  LKVAT+EG+ + I++  +  +E   +QI+EIV ALVLDNEV+EV+S+  G++A+
Sbjct: 119 WRKIYGLKVATLEGVTDAIKRSNVSQIELSKQQIEEIVKALVLDNEVMEVKSSGTGEFAS 178

Query: 550 IPFGTLCYKPAKKL-----PKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           IP G +CYK   K      PKVG + SIPCGVCP+I  CTPDGIISP TC+YY KWLDF
Sbjct: 179 IPVGKVCYKCIGKRGYGGEPKVGTMASIPCGVCPQISHCTPDGIISPKTCVYYKKWLDF 237


>ref|XP_004303315.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
           isoform 1 [Fragaria vesca subsp. vesca]
           gi|470134993|ref|XP_004303316.1| PREDICTED: DNA-directed
           RNA polymerase III subunit rpc6-like isoform 2 [Fragaria
           vesca subsp. vesca] gi|470134995|ref|XP_004303317.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           rpc6-like isoform 3 [Fragaria vesca subsp. vesca]
          Length = 236

 Score =  239 bits (611), Expect = 1e-60
 Identities = 120/238 (50%), Positives = 163/238 (68%), Gaps = 4/238 (1%)
 Frame = +1

Query: 10  MGRERDNLSLKRKRPDEKSPSQRLSEAERKIYECIRSKEGLGIFLGDIKRETNLSDPLFK 189
           M R +   +LKRKR D +S S  L+E E K+Y+ IRSK  +G+ + D++RET L   LF 
Sbjct: 1   MSRSQQPSALKRKRLDSQSGS--LTEHESKLYDAIRSKTDMGMSVQDLRRETGLQTNLFT 58

Query: 190 KSIKSLQDNKLVKEVSHYLNKGKKYFMAVEFEPADEVTGGTWYSNGSLDIDFINTLKKAC 369
           K+IK+LQ  +L+KEV ++ NK +K++MA EFEP+ E+TGG WY NG  D DFI  +K+  
Sbjct: 59  KAIKTLQAKQLIKEVKNFDNKTRKHYMATEFEPSKEITGGAWYDNGQFDTDFIKVVKREL 118

Query: 370 SMCISKLKVATIEGILELIRKLRLLHVECDTEQIKEIVHALVLDNEVLEVRSTEMGDYAN 549
              I   K+AT+EGI   I K + L V   T+++K+I+ ALVLDNEVL+V ST MG++  
Sbjct: 119 VKVIYDQKIATLEGISNAISKKKFLTVNLSTQELKQILEALVLDNEVLKVVSTGMGEFVG 178

Query: 550 IPFGTLCYKPAKK----LPKVGALTSIPCGVCPRIHECTPDGIISPVTCIYYTKWLDF 711
           I  G  CYK  K+     P + ++ SIPCGVCPRI++CTPDGIISP+TC Y+ KWLDF
Sbjct: 179 IKAGKDCYKCCKRGVRGEPNLASMASIPCGVCPRINQCTPDGIISPITCEYFKKWLDF 236