BLASTX nr result
ID: Cocculus22_contig00014238
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00014238
(1464 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl... 333 2e-88
ref|XP_007017900.1| Pseudouridine synthase family protein isofor... 332 3e-88
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor... 323 2e-85
emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera] 323 2e-85
ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phas... 322 3e-85
ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phas... 322 3e-85
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr... 318 5e-84
ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group] g... 316 2e-83
gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indi... 316 2e-83
gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus... 314 7e-83
gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus... 314 7e-83
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl... 313 1e-82
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl... 313 2e-82
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor... 312 3e-82
ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chlor... 311 5e-82
ref|XP_002301949.1| pseudouridine synthase family protein [Popul... 311 6e-82
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps... 310 8e-82
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor... 310 1e-81
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl... 309 2e-81
ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [S... 308 4e-81
>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
sinensis]
Length = 421
Score = 333 bits (853), Expect = 2e-88
Identities = 167/220 (75%), Positives = 181/220 (82%)
Frame = +2
Query: 68 SSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLS 247
S E SSS +IRPGIVHRLDKGTSGLLVVAK+EHSHAHLSEQFK HT++RVYISL+
Sbjct: 196 SDDEEFSSSISGASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLT 255
Query: 248 SGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEW 427
SGVPS SGRI+VPI RD NNRIRMAAIPG H Q RHA SRYKVIE+L GGG+ALVEW
Sbjct: 256 SGVPSQSSGRIEVPISRDPNNRIRMAAIPGSNKHGQARHAASRYKVIEILAGGGSALVEW 315
Query: 428 RLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRP 607
RLETGRTHQIRAHAKY+GIPLLGDEVYGGTK+MA SLLQP+T + KLVS LQRP
Sbjct: 316 RLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTAPGSHGKVLKLVSGLQRP 375
Query: 608 CLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
CLHA+ LGF HPHT E +QFSCPPP DFAEIL LR I T
Sbjct: 376 CLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGT 415
>ref|XP_007017900.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
gi|508723228|gb|EOY15125.1| Pseudouridine synthase
family protein isoform 1 [Theobroma cacao]
Length = 433
Score = 332 bits (850), Expect = 3e-88
Identities = 157/214 (73%), Positives = 186/214 (86%)
Frame = +2
Query: 107 AIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGRIDV 286
++RPGIVHRLDKGTSGLLVVAK+EHSH+HLSEQFKQHT+QRVYISL+ GVPSP +GR+D+
Sbjct: 220 SVRPGIVHRLDKGTSGLLVVAKDEHSHSHLSEQFKQHTIQRVYISLTCGVPSPSAGRVDI 279
Query: 287 PIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWRLETGRTHQIRAH 466
IGRD NNR+RM A+PGL +H + RHA SRYKVIEVL GGG+AL++WRLETGRTHQIRAH
Sbjct: 280 SIGRDSNNRVRMIAVPGLNHHGRARHAASRYKVIEVLAGGGSALIQWRLETGRTHQIRAH 339
Query: 467 AKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFKHPH 646
AKY+GIPLLGDEVYGGTKSMA+SLL+P+TP N LS+LVS+L+RP LHAL LGF+HPH
Sbjct: 340 AKYMGIPLLGDEVYGGTKSMALSLLRPRTPPNYNDQLSRLVSRLERPYLHALVLGFEHPH 399
Query: 647 TGEVLQFSCPPPLDFAEILCLLRSISTVMPSVKK 748
+ E++ FSC PP DFAEIL LR I T P+ K+
Sbjct: 400 SREMMHFSCQPPPDFAEILSDLRKIGTEKPTFKE 433
>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
product [Vitis vinifera]
Length = 433
Score = 323 bits (827), Expect = 2e-85
Identities = 154/210 (73%), Positives = 179/210 (85%)
Frame = +2
Query: 98 CTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGR 277
C IRPGIVHRLDKGTSGLLVVAK+EHSHAHLSEQFK H++ RVYISL+SGVP+P+SGR
Sbjct: 216 CETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGR 275
Query: 278 IDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWRLETGRTHQI 457
+++P+GRD NNRIRM A+PG N Q RHA SRYKVIE+L GG+ALVEWRLETGRTHQI
Sbjct: 276 VEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQI 335
Query: 458 RAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFK 637
RAHAKYLGIPLLGDEVYGGTK+MA+SLL+P+ P++ L++LVS+L RPCLHA+ LGF
Sbjct: 336 RAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFN 395
Query: 638 HPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
HP TG+ + FSC PP DFAEIL LR IST
Sbjct: 396 HPKTGKNVHFSCQPPEDFAEILSWLRKIST 425
>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
Length = 611
Score = 323 bits (827), Expect = 2e-85
Identities = 154/210 (73%), Positives = 179/210 (85%)
Frame = +2
Query: 98 CTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSSGVPSPISGR 277
C IRPGIVHRLDKGTSGLLVVAK+EHSHAHLSEQFK H++ RVYISL+SGVP+P+SGR
Sbjct: 362 CETNIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGR 421
Query: 278 IDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWRLETGRTHQI 457
+++P+GRD NNRIRM A+PG N Q RHA SRYKVIE+L GG+ALVEWRLETGRTHQI
Sbjct: 422 VEIPVGRDPNNRIRMTAVPGPSNSGQARHAASRYKVIEILAAGGSALVEWRLETGRTHQI 481
Query: 458 RAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALTLGFK 637
RAHAKYLGIPLLGDEVYGGTK+MA+SLL+P+ P++ L++LVS+L RPCLHA+ LGF
Sbjct: 482 RAHAKYLGIPLLGDEVYGGTKNMALSLLRPRIPSSHHGQLAQLVSRLDRPCLHAVALGFN 541
Query: 638 HPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
HP TG+ + FSC PP DFAEIL LR IST
Sbjct: 542 HPKTGKNVHFSCQPPEDFAEILSWLRKIST 571
>ref|XP_007136120.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
gi|561009207|gb|ESW08114.1| hypothetical protein
PHAVU_009G019500g [Phaseolus vulgaris]
Length = 447
Score = 322 bits (825), Expect = 3e-85
Identities = 157/235 (66%), Positives = 190/235 (80%), Gaps = 1/235 (0%)
Frame = +2
Query: 47 IRSFDNHSSSGEISSSRCT-DAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTV 223
+ S+ + +SS E S SR + +IRPGIVHRLDKGTSGLLVVAK+EHSH LSEQFKQ T+
Sbjct: 209 VNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTI 268
Query: 224 QRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGG 403
+RVY+SL++GVP PISGR+DVP+GRDLNNR+RM A+ G N R+ RHA SRYKVIE+L G
Sbjct: 269 KRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAG 328
Query: 404 GGAALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSK 583
G +LVEW+LETGRTHQIRAHAKYLG+PLLGDEVYGGTKSM +SLL+P++P + + +
Sbjct: 329 GSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQ 388
Query: 584 LVSKLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSISTVMPSVKK 748
+VS L RPCLHALTLGF+HPHTGE + FSC PP+DF EIL LR I + S K
Sbjct: 389 MVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSK 443
>ref|XP_007136119.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
gi|561009206|gb|ESW08113.1| hypothetical protein
PHAVU_009G019500g [Phaseolus vulgaris]
Length = 458
Score = 322 bits (825), Expect = 3e-85
Identities = 157/235 (66%), Positives = 190/235 (80%), Gaps = 1/235 (0%)
Frame = +2
Query: 47 IRSFDNHSSSGEISSSRCT-DAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTV 223
+ S+ + +SS E S SR + +IRPGIVHRLDKGTSGLLVVAK+EHSH LSEQFKQ T+
Sbjct: 220 VNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTI 279
Query: 224 QRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGG 403
+RVY+SL++GVP PISGR+DVP+GRDLNNR+RM A+ G N R+ RHA SRYKVIE+L G
Sbjct: 280 KRVYVSLTAGVPRPISGRVDVPVGRDLNNRLRMTAVAGPVNSRKARHAASRYKVIEILAG 339
Query: 404 GGAALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSK 583
G +LVEW+LETGRTHQIRAHAKYLG+PLLGDEVYGGTKSM +SLL+P++P + + +
Sbjct: 340 GSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRSPISLHGKIVQ 399
Query: 584 LVSKLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSISTVMPSVKK 748
+VS L RPCLHALTLGF+HPHTGE + FSC PP+DF EIL LR I + S K
Sbjct: 400 MVSSLDRPCLHALTLGFQHPHTGEQVHFSCEPPVDFDEILSQLRRIGSESVSFSK 454
>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
gi|557086678|gb|ESQ27530.1| hypothetical protein
EUTSA_v10018588mg [Eutrema salsugineum]
Length = 432
Score = 318 bits (814), Expect = 5e-84
Identities = 152/210 (72%), Positives = 180/210 (85%)
Frame = +2
Query: 86 SSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSSGVPSP 265
SSS ++RPGIVHRLDKGTSGLLVVAK+EHSHAHL+EQFK HT++RVYISL+SGVPSP
Sbjct: 215 SSSSLAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKLHTIERVYISLTSGVPSP 274
Query: 266 ISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWRLETGR 445
GR+D+PIGRD NNRIRMAAIPG + + RHA SRYKVIE L GGG+ALVEWRLETGR
Sbjct: 275 SQGRVDIPIGRDPNNRIRMAAIPGSLSRGKARHAASRYKVIETLAGGGSALVEWRLETGR 334
Query: 446 THQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHALT 625
THQIRAHAKY+G+PLLGDEVYGGTKS+A+SLLQ + + + + +LVS++ RPCLHA+
Sbjct: 335 THQIRAHAKYMGVPLLGDEVYGGTKSVALSLLQRRVSRSDQEQILELVSRMDRPCLHAIV 394
Query: 626 LGFKHPHTGEVLQFSCPPPLDFAEILCLLR 715
LGF+HP TGEV++FSCPPP D AEI+ LLR
Sbjct: 395 LGFEHPCTGEVVKFSCPPPSDLAEIVGLLR 424
>ref|NP_001058594.1| Os06g0717400 [Oryza sativa Japonica Group]
gi|75252835|sp|Q5Z8P2.1|PUS2_ORYSJ RecName: Full=RNA
pseudouridine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|53791796|dbj|BAD53590.1| ribosomal large subunit
pseudouridine synthase-like [Oryza sativa Japonica
Group] gi|54291043|dbj|BAD61720.1| ribosomal large
subunit pseudouridine synthase-like [Oryza sativa
Japonica Group] gi|113596634|dbj|BAF20508.1|
Os06g0717400 [Oryza sativa Japonica Group]
gi|215706335|dbj|BAG93191.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|222636236|gb|EEE66368.1| hypothetical protein
OsJ_22675 [Oryza sativa Japonica Group]
Length = 445
Score = 316 bits (809), Expect = 2e-83
Identities = 152/218 (69%), Positives = 179/218 (82%)
Frame = +2
Query: 71 SSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSS 250
++GE+SS +RPGIVHRLDKGTSGLLVVAK+EHSHA L+EQFK HT++RVYISL+
Sbjct: 213 TTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTC 272
Query: 251 GVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWR 430
G P+P SGRI+VPI RD NNRIRM A PG HR RHA SRYKV EV GGG+ALVEWR
Sbjct: 273 GAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAASRYKVREVFAGGGSALVEWR 331
Query: 431 LETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPC 610
LETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA+SLL+P+TP+ +LS ++SK+ RPC
Sbjct: 332 LETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPC 391
Query: 611 LHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIS 724
LHA LGFKHPH+G++L+FSCPPP DF E+L L ++
Sbjct: 392 LHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELHQVT 429
>gb|EEC81320.1| hypothetical protein OsI_24484 [Oryza sativa Indica Group]
Length = 445
Score = 316 bits (809), Expect = 2e-83
Identities = 152/218 (69%), Positives = 179/218 (82%)
Frame = +2
Query: 71 SSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSS 250
++GE+SS +RPGIVHRLDKGTSGLLVVAK+EHSHA L+EQFK HT++RVYISL+
Sbjct: 213 TTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTC 272
Query: 251 GVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWR 430
G P+P SGRI+VPI RD NNRIRM A PG HR RHA SRYKV EV GGG+ALVEWR
Sbjct: 273 GAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAASRYKVREVFAGGGSALVEWR 331
Query: 431 LETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPC 610
LETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA+SLL+P+TP+ +LS ++SK+ RPC
Sbjct: 332 LETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTPSRYHCDLSNMISKIDRPC 391
Query: 611 LHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIS 724
LHA LGFKHPH+G++L+FSCPPP DF E+L L ++
Sbjct: 392 LHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELHQVT 429
>gb|EYU17563.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
Length = 422
Score = 314 bits (804), Expect = 7e-83
Identities = 153/225 (68%), Positives = 183/225 (81%)
Frame = +2
Query: 53 SFDNHSSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRV 232
+ D+ S E + ++RPGIVHRLDKGTSGLLVVAK+EHSH+HL+EQFK+HTV+RV
Sbjct: 195 NIDDDDSIDEATVFPSESSVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTVKRV 254
Query: 233 YISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGA 412
Y+SL+ GVPSP+SGR+D+PIGRD NNRIRM AIPG H + RHA SRYKV+E+L GGG
Sbjct: 255 YVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKARHAVSRYKVVEILAGGGC 314
Query: 413 ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVS 592
ALVEWRLETGRTHQIRAHAKYLGIPLLGD+VYGGTK MA+S LQ K ++ + +LV+
Sbjct: 315 ALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQLQSKNSSSYYGQIHQLVA 374
Query: 593 KLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
KL+RP LHAL+LGF+HPH GE L FS PP DFAEIL LR+IS+
Sbjct: 375 KLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRNISS 419
>gb|EYU17562.1| hypothetical protein MIMGU_mgv1a006781mg [Mimulus guttatus]
Length = 432
Score = 314 bits (804), Expect = 7e-83
Identities = 153/225 (68%), Positives = 183/225 (81%)
Frame = +2
Query: 53 SFDNHSSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRV 232
+ D+ S E + ++RPGIVHRLDKGTSGLLVVAK+EHSH+HL+EQFK+HTV+RV
Sbjct: 195 NIDDDDSIDEATVFPSESSVRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFKKHTVKRV 254
Query: 233 YISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGA 412
Y+SL+ GVPSP+SGR+D+PIGRD NNRIRM AIPG H + RHA SRYKV+E+L GGG
Sbjct: 255 YVSLTCGVPSPVSGRVDIPIGRDSNNRIRMVAIPGSALHGKARHAVSRYKVVEILAGGGC 314
Query: 413 ALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVS 592
ALVEWRLETGRTHQIRAHAKYLGIPLLGD+VYGGTK MA+S LQ K ++ + +LV+
Sbjct: 315 ALVEWRLETGRTHQIRAHAKYLGIPLLGDDVYGGTKHMALSQLQSKNSSSYYGQIHQLVA 374
Query: 593 KLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
KL+RP LHAL+LGF+HPH GE L FS PP DFAEIL LR+IS+
Sbjct: 375 KLERPSLHALSLGFRHPHKGEDLHFSQMPPFDFAEILDCLRNISS 419
>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
PREDICTED: RNA pseudouridine synthase 2,
chloroplastic-like isoform X2 [Glycine max]
Length = 450
Score = 313 bits (802), Expect = 1e-82
Identities = 151/235 (64%), Positives = 190/235 (80%), Gaps = 3/235 (1%)
Frame = +2
Query: 53 SFDNHSSSGEISSSR---CTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTV 223
S+ + +SS E +SR +++IRPGIVHRLDKGTSGLLVVAK+EHSH LSEQFKQ T+
Sbjct: 212 SYISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAKDEHSHMKLSEQFKQRTI 271
Query: 224 QRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGG 403
+R+Y+SL++GVP+P++GR++VP+GRD NNRIRM A+ G N ++ R+A SRYKVIE+L G
Sbjct: 272 KRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAG 331
Query: 404 GGAALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSK 583
G +LVEW+LETGRTHQIRAHAKYLG+PLLGDE+YGGTKSM +SLL+P+TP + + K
Sbjct: 332 GSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRPRTPISLHSKIVK 391
Query: 584 LVSKLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSISTVMPSVKK 748
+VS+L RPCLHA TLGF+HPHTGE + FSC PP DFAEIL LR I + S K
Sbjct: 392 MVSRLDRPCLHAWTLGFQHPHTGEQVHFSCEPPADFAEILSQLRRIGSETVSFTK 446
>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Oryza
brachyantha]
Length = 442
Score = 313 bits (801), Expect = 2e-82
Identities = 151/218 (69%), Positives = 179/218 (82%)
Frame = +2
Query: 71 SSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSS 250
++GE+SS +RPGIVHRLDKGTSGLLVVAK+EHSHA L+EQFK HT++RVYISL+
Sbjct: 211 TTGEVSSEVREALVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTC 270
Query: 251 GVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWR 430
G P+P SGRI+VPI RD NNRIRM A PG HR RHA SRYKV EV GGG+ALVEW+
Sbjct: 271 GAPNPNSGRIEVPIARDPNNRIRMIATPG-SGHRYARHAASRYKVREVFAGGGSALVEWK 329
Query: 431 LETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPC 610
LETGRTHQIRAHAKYLGIPLLGDE YGGTKSMA+SLL+P+T + +LS L++K+ RPC
Sbjct: 330 LETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTSSRYHCDLSNLIAKIDRPC 389
Query: 611 LHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIS 724
LHA LGFKHPH+G++L+FSCPPP DF E+L LR ++
Sbjct: 390 LHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELRRVT 427
>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
lycopersicum]
Length = 436
Score = 312 bits (799), Expect = 3e-82
Identities = 154/222 (69%), Positives = 183/222 (82%)
Frame = +2
Query: 62 NHSSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYIS 241
N S + + SS C ++RPGIVHRLDKGTSGLLVVAK EHS A L+EQFK+HT++RVY+S
Sbjct: 206 NRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADLAEQFKKHTIKRVYVS 265
Query: 242 LSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALV 421
++ GVP+ ++GR+D+PIGRD NNRIRMAAIPG + RHA SRYKVIE L GGG+ALV
Sbjct: 266 ITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLAGGGSALV 325
Query: 422 EWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQ 601
EWRLETGRTHQIRAHAK+LGIPL+GDEVYGGTK+MA+SLLQPKTP LS+LVS++
Sbjct: 326 EWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGELSQLVSQID 385
Query: 602 RPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
RPCLHALTLGF+HP TGE + F+ PP DFAEIL LR+I T
Sbjct: 386 RPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKT 427
>ref|XP_003563280.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like
[Brachypodium distachyon]
Length = 439
Score = 311 bits (797), Expect = 5e-82
Identities = 153/228 (67%), Positives = 181/228 (79%)
Frame = +2
Query: 56 FDNHSSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVY 235
FD +GE+SS +RPGIVHRLDKGTSGLLVVAK+EHSHA L+EQFK HT++R+Y
Sbjct: 203 FDVDQFNGEVSSEVRDAIVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIRRIY 262
Query: 236 ISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAA 415
ISL+ GVP+P S RI+VPI RD NNRIRM A PG HR RHA SRYKV EV GG+A
Sbjct: 263 ISLTCGVPNPNSARIEVPISRDPNNRIRMIAAPG-SGHRYARHAASRYKVREVFCSGGSA 321
Query: 416 LVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSK 595
LVEW+LETGRTHQIRAHAKYLG PLLGDE YGG+KSMA+SLL+P+TP+ +LS L+SK
Sbjct: 322 LVEWKLETGRTHQIRAHAKYLGYPLLGDETYGGSKSMALSLLRPRTPSRYHGDLSNLISK 381
Query: 596 LQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSISTVMPS 739
+ RPCLHA LGFKHPH+G++L+FSCPPP DFAE+L LR ++ S
Sbjct: 382 IDRPCLHAALLGFKHPHSGKMLEFSCPPPDDFAEVLDELRRVTPTSDS 429
>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
gi|222843675|gb|EEE81222.1| pseudouridine synthase
family protein [Populus trichocarpa]
Length = 444
Score = 311 bits (796), Expect = 6e-82
Identities = 154/222 (69%), Positives = 182/222 (81%)
Frame = +2
Query: 83 ISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYISLSSGVPS 262
+ SS ++RPGIVHRLDKGTSGLLVVAK+EHSHAHLSEQFK HT++RVY+SL+ GVP+
Sbjct: 224 LCSSSYAASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPA 283
Query: 263 PISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALVEWRLETG 442
P++GRIDVPIGRD++NRIRMAAI N Q RHA SRYKVIE+L GGG+ALVEWRLETG
Sbjct: 284 PMAGRIDVPIGRDVSNRIRMAAIVEP-NRGQARHAASRYKVIEILAGGGSALVEWRLETG 342
Query: 443 RTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQRPCLHAL 622
RTHQIRAHAKY+GIPLLGDEVYGGT++MA+SLL+ +T +C LS +S L+RPCLHAL
Sbjct: 343 RTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRTQPSCHRQLSLSLSGLERPCLHAL 402
Query: 623 TLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSISTVMPSVKK 748
LGF HP TG+ + FSCPPP DF EIL LR + T S K+
Sbjct: 403 ALGFTHPCTGKEIHFSCPPPPDFTEILSQLREMGTEKLSFKE 444
>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
gi|482570987|gb|EOA35175.1| hypothetical protein
CARUB_v10020321mg [Capsella rubella]
Length = 432
Score = 310 bits (795), Expect = 8e-82
Identities = 152/223 (68%), Positives = 184/223 (82%), Gaps = 2/223 (0%)
Frame = +2
Query: 53 SFDNHSSSGE--ISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQ 226
S D S GE SSS ++RPGIVHRLDKGT+GLLVVAK+EHSHAHL+EQFK HT++
Sbjct: 202 SDDESFSDGEEMTSSSSYAASVRPGIVHRLDKGTTGLLVVAKDEHSHAHLAEQFKLHTIE 261
Query: 227 RVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGG 406
RVY+SL++GVPSP GRI++PIGRD +NRIRMAAIPG + + RHA SRYKVIE L GG
Sbjct: 262 RVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMAAIPGGLSSGRARHAASRYKVIETLAGG 321
Query: 407 GAALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKL 586
G+ALVEWRLETGRTHQIRAHAKY+G+PLLGDEVYGGTKSMA+SLLQ + + + + +L
Sbjct: 322 GSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVCRSDQDEIIEL 381
Query: 587 VSKLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLR 715
+S+L RPCLHA+ LGF HP TG++++FSCPPP D AEI+ LLR
Sbjct: 382 ISRLDRPCLHAIVLGFTHPCTGKIVKFSCPPPPDLAEIVGLLR 424
>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
sativus]
Length = 453
Score = 310 bits (794), Expect = 1e-81
Identities = 156/228 (68%), Positives = 183/228 (80%), Gaps = 5/228 (2%)
Frame = +2
Query: 59 DNHSSSGEISS----SRCTDA-IRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTV 223
D+ S E SS SR ++A IRPGIVHRLDKGTSGLLVVAK+EHSHAHLS QFKQH++
Sbjct: 197 DSDVSDDEFSSIGVFSRVSEAPIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSAQFKQHSI 256
Query: 224 QRVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGG 403
+RVYISL+ GVP +GRI++PI RD NNRIRM AI G N+ ++A SRY V+E+L
Sbjct: 257 ERVYISLTCGVPPSTAGRIEMPICRDPNNRIRMTAIDGTKNNPHAKYAASRYNVMEILAQ 316
Query: 404 GGAALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSK 583
GG++LVEWRLETGRTHQIRAHAKY+GIPLLGDEVYGGTKSMAMSLL+ + +NC L +
Sbjct: 317 GGSSLVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMAMSLLRTRASSNCHGQLMQ 376
Query: 584 LVSKLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
LVS L+RPCLHALTLGF HPHTG+ ++FSCPPP DF EIL LR I T
Sbjct: 377 LVSSLERPCLHALTLGFVHPHTGKNIRFSCPPPTDFTEILSQLREIGT 424
>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
[Solanum tuberosum]
Length = 431
Score = 309 bits (792), Expect = 2e-81
Identities = 153/222 (68%), Positives = 183/222 (82%)
Frame = +2
Query: 62 NHSSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQRVYIS 241
N S + + SS C ++RPGIVHRLDKGTSGLLVVAK E+S A L+EQFK+HT++RVY+S
Sbjct: 206 NRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENSLASLAEQFKKHTIKRVYVS 265
Query: 242 LSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGGGAALV 421
++ GVP+ ++GR+D+PIGRD NNRIRMAAIPG + RHA SRYKVIE L GG+ALV
Sbjct: 266 ITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSRYKVIEKLARGGSALV 325
Query: 422 EWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKLVSKLQ 601
EWRLETGRTHQIRAHAKYLGIPL+GDEVYGGTK+MA+SLLQPKTP LS+LVS++
Sbjct: 326 EWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPMFHGKLSQLVSQID 385
Query: 602 RPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
RPCLHALTLGF+HP TGE + F+ PP DFAEIL LR+I+T
Sbjct: 386 RPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAINT 427
>ref|XP_002439034.1| hypothetical protein SORBIDRAFT_10g030300 [Sorghum bicolor]
gi|241917257|gb|EER90401.1| hypothetical protein
SORBIDRAFT_10g030300 [Sorghum bicolor]
Length = 441
Score = 308 bits (789), Expect = 4e-81
Identities = 151/227 (66%), Positives = 182/227 (80%)
Frame = +2
Query: 47 IRSFDNHSSSGEISSSRCTDAIRPGIVHRLDKGTSGLLVVAKEEHSHAHLSEQFKQHTVQ 226
+ F +S E+ ++ +RPGIVHRLDKGTSGLLVVAK+EHSHA L+EQFK HT++
Sbjct: 210 VDQFATEDASSEVRNA----LVRPGIVHRLDKGTSGLLVVAKDEHSHAQLAEQFKLHTIR 265
Query: 227 RVYISLSSGVPSPISGRIDVPIGRDLNNRIRMAAIPGLCNHRQVRHAGSRYKVIEVLGGG 406
RVYISL+ GVP+P SGRI+ I RD NNRIRM AI G HR RHA SRYKV EV GG
Sbjct: 266 RVYISLTCGVPNPNSGRIEASIARDPNNRIRMIAIAG-SGHRYARHAASRYKVREVFVGG 324
Query: 407 GAALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMAMSLLQPKTPANCRVNLSKL 586
G+ALVEWRLETGRTHQIRAHAKY+GIPLLGDE YGGTKSMA+SLL+P+TP+ +LS L
Sbjct: 325 GSALVEWRLETGRTHQIRAHAKYIGIPLLGDETYGGTKSMALSLLRPRTPSKYHSDLSNL 384
Query: 587 VSKLQRPCLHALTLGFKHPHTGEVLQFSCPPPLDFAEILCLLRSIST 727
+SK+ RPCLHA LGFKHPH+G++L+FSCPPP DF+E+L LR +++
Sbjct: 385 ISKVDRPCLHAALLGFKHPHSGKILEFSCPPPDDFSEVLDELRKVTS 431