BLASTX nr result
ID: Cocculus22_contig00014198
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00014198
(598 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EXC35053.1| Cold-inducible RNA-binding protein [Morus notabilis] 129 5e-28
ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protei... 125 7e-27
ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arab... 114 2e-23
ref|XP_002533105.1| cold-inducible RNA binding protein, putative... 114 3e-23
ref|XP_002299889.1| RNA recognition motif-containing family prot... 114 3e-23
ref|NP_190188.1| RNA recognition motif-containing protein [Arabi... 113 5e-23
ref|XP_006363377.1| PREDICTED: cold-inducible RNA-binding protei... 112 8e-23
ref|XP_006424765.1| hypothetical protein CICLE_v10029673mg [Citr... 110 3e-22
ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protei... 110 4e-22
ref|XP_006292104.1| hypothetical protein CARUB_v10018300mg [Caps... 109 7e-22
ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protei... 108 9e-22
dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana] 108 9e-22
ref|XP_006649858.1| PREDICTED: glycine-rich RNA-binding protein ... 106 6e-21
ref|XP_006279867.1| hypothetical protein CARUB_v10028559mg [Caps... 106 6e-21
ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein ... 106 6e-21
ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp.... 106 6e-21
ref|XP_007208554.1| hypothetical protein PRUPE_ppa024320mg [Prun... 105 1e-20
ref|XP_004294595.1| PREDICTED: polyadenylate-binding protein, cy... 105 1e-20
ref|XP_006848599.1| hypothetical protein AMTR_s00168p00066520 [A... 100 2e-19
ref|XP_004981486.1| PREDICTED: glycine-rich RNA-binding protein ... 100 4e-19
>gb|EXC35053.1| Cold-inducible RNA-binding protein [Morus notabilis]
Length = 94
Score = 129 bits (325), Expect = 5e-28
Identities = 63/81 (77%), Positives = 73/81 (90%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSSYTTN+ LK+LFSPFGE+ EARLV D +TQRPKGFGFVTYESE++AQKALKAM+GRIV
Sbjct: 14 LSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVEAQKALKAMNGRIV 73
Query: 416 RGRLIFVEVAKTTTPGKSGTA 354
GRLIFVEVAKT+ PG+ T+
Sbjct: 74 DGRLIFVEVAKTSKPGEEATS 94
>ref|XP_002284323.1| PREDICTED: cold-inducible RNA-binding protein [Vitis vinifera]
gi|297746123|emb|CBI16179.3| unnamed protein product
[Vitis vinifera]
Length = 112
Score = 125 bits (315), Expect = 7e-27
Identities = 59/80 (73%), Positives = 71/80 (88%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS YTTN+EL E+FSPFG + +ARL+KD +TQRPKGFGFV +ESE+DA+KALKAM+GRIV
Sbjct: 32 LSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDAEKALKAMNGRIV 91
Query: 416 RGRLIFVEVAKTTTPGKSGT 357
RGRLIFVE+AKTT PG+ T
Sbjct: 92 RGRLIFVEIAKTTRPGEDAT 111
>ref|XP_002877450.1| hypothetical protein ARALYDRAFT_905782 [Arabidopsis lyrata subsp.
lyrata] gi|297323288|gb|EFH53709.1| hypothetical protein
ARALYDRAFT_905782 [Arabidopsis lyrata subsp. lyrata]
Length = 102
Score = 114 bits (285), Expect = 2e-23
Identities = 52/73 (71%), Positives = 68/73 (93%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS+YTT++ L++LFSPFG+IKEARL++D TQRPKGFGF+T+ESE DA+KALK++DG+IV
Sbjct: 14 LSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFESEDDARKALKSLDGKIV 73
Query: 416 RGRLIFVEVAKTT 378
GRLIFVEVAK++
Sbjct: 74 EGRLIFVEVAKSS 86
>ref|XP_002533105.1| cold-inducible RNA binding protein, putative [Ricinus communis]
gi|223527096|gb|EEF29277.1| cold-inducible RNA binding
protein, putative [Ricinus communis]
Length = 94
Score = 114 bits (284), Expect = 3e-23
Identities = 56/81 (69%), Positives = 69/81 (85%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS YTTN++L++LFSPFG +KEARLV D RTQ+PKGFGFVT++SE AQKALKAM+GRIV
Sbjct: 14 LSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALKAMNGRIV 73
Query: 416 RGRLIFVEVAKTTTPGKSGTA 354
GRL+FVEVAK+ G+ +A
Sbjct: 74 DGRLLFVEVAKSINSGEDASA 94
>ref|XP_002299889.1| RNA recognition motif-containing family protein [Populus
trichocarpa] gi|222847147|gb|EEE84694.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 88
Score = 114 bits (284), Expect = 3e-23
Identities = 57/73 (78%), Positives = 62/73 (84%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSSYTTN ELK LFSPFG + EARLV + +T RPKGFGFVT+ESE DA KALKAM+GRIV
Sbjct: 14 LSSYTTNHELKRLFSPFGAVSEARLVVESKTLRPKGFGFVTFESEADAHKALKAMNGRIV 73
Query: 416 RGRLIFVEVAKTT 378
GRLIFVEVAK T
Sbjct: 74 NGRLIFVEVAKDT 86
>ref|NP_190188.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|7630030|emb|CAB88326.1| RNA binding protein-like
[Arabidopsis thaliana] gi|46931202|gb|AAT06405.1|
At3g46020 [Arabidopsis thaliana]
gi|50253530|gb|AAT71967.1| At3g46020 [Arabidopsis
thaliana] gi|332644581|gb|AEE78102.1| RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 102
Score = 113 bits (282), Expect = 5e-23
Identities = 52/79 (65%), Positives = 69/79 (87%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS+YTT++ L++LFSPFG+IKEARL++D TQRPKGFGF+T++SE DA+KALK++DG+IV
Sbjct: 14 LSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIV 73
Query: 416 RGRLIFVEVAKTTTPGKSG 360
GRLIFVEVAK ++G
Sbjct: 74 DGRLIFVEVAKNAEEVRAG 92
>ref|XP_006363377.1| PREDICTED: cold-inducible RNA-binding protein-like [Solanum
tuberosum]
Length = 125
Score = 112 bits (280), Expect = 8e-23
Identities = 56/81 (69%), Positives = 69/81 (85%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS YTT+++LK+LFSPFG + EARLVKD RTQRPKGFGFVT+ESE DAQ AL +++GRIV
Sbjct: 43 LSFYTTSEQLKKLFSPFGVVTEARLVKDPRTQRPKGFGFVTFESEADAQNALNSLNGRIV 102
Query: 416 RGRLIFVEVAKTTTPGKSGTA 354
GRLIFVEVA+TT ++ T+
Sbjct: 103 DGRLIFVEVAETTEAVENKTS 123
>ref|XP_006424765.1| hypothetical protein CICLE_v10029673mg [Citrus clementina]
gi|568870147|ref|XP_006488271.1| PREDICTED: glycine-rich
RNA-binding protein 4, mitochondrial-like [Citrus
sinensis] gi|557526699|gb|ESR38005.1| hypothetical
protein CICLE_v10029673mg [Citrus clementina]
Length = 94
Score = 110 bits (275), Expect = 3e-22
Identities = 53/76 (69%), Positives = 63/76 (82%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSSY T KE K LFS FG + +A+L+ D +TQRPKGFGF+T++SE DAQKALK MDGRIV
Sbjct: 14 LSSYITTKEFKALFSRFGVVTDAKLITDPKTQRPKGFGFITFQSEDDAQKALKTMDGRIV 73
Query: 416 RGRLIFVEVAKTTTPG 369
GRLIFVEVAK+ +PG
Sbjct: 74 NGRLIFVEVAKSRSPG 89
>ref|XP_004159670.1| PREDICTED: cold-inducible RNA-binding protein B-like [Cucumis
sativus]
Length = 95
Score = 110 bits (274), Expect = 4e-22
Identities = 55/81 (67%), Positives = 65/81 (80%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSSYTT + LK LFSPFG I EARL++D +T+RPKGFGFVT++S +A+KALKAMDGRIV
Sbjct: 14 LSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIV 73
Query: 416 RGRLIFVEVAKTTTPGKSGTA 354
GRLIFVE AKT G T+
Sbjct: 74 DGRLIFVEFAKTEKHGVDPTS 94
>ref|XP_006292104.1| hypothetical protein CARUB_v10018300mg [Capsella rubella]
gi|482560811|gb|EOA25002.1| hypothetical protein
CARUB_v10018300mg [Capsella rubella]
Length = 100
Score = 109 bits (272), Expect = 7e-22
Identities = 50/71 (70%), Positives = 65/71 (91%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS+Y T++ L++LFS FG+IKEARL++D +TQRPKGFGF+TYESE DA+KA+K++DG+IV
Sbjct: 14 LSAYATDQSLRQLFSQFGQIKEARLIRDSKTQRPKGFGFITYESEDDARKAMKSLDGKIV 73
Query: 416 RGRLIFVEVAK 384
GRLIFVEVAK
Sbjct: 74 DGRLIFVEVAK 84
>ref|XP_004135289.1| PREDICTED: cold-inducible RNA-binding protein B-like isoform 1
[Cucumis sativus] gi|449435013|ref|XP_004135290.1|
PREDICTED: cold-inducible RNA-binding protein B-like
isoform 2 [Cucumis sativus]
Length = 89
Score = 108 bits (271), Expect = 9e-22
Identities = 54/76 (71%), Positives = 63/76 (82%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSSYTT + LK LFSPFG I EARL++D +T+RPKGFGFVT++S +A+KALKAMDGRIV
Sbjct: 14 LSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAEAKKALKAMDGRIV 73
Query: 416 RGRLIFVEVAKTTTPG 369
GRLIFVE AKT G
Sbjct: 74 DGRLIFVEFAKTGDMG 89
>dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
Length = 112
Score = 108 bits (271), Expect = 9e-22
Identities = 50/71 (70%), Positives = 65/71 (91%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS+YTT++ L++LF+PFG+I E+RL+KD +TQRPKGFGF+T+ESE DAQKALKA++G+IV
Sbjct: 28 LSAYTTDQSLRQLFAPFGQITESRLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 87
Query: 416 RGRLIFVEVAK 384
GRLIFVE AK
Sbjct: 88 NGRLIFVETAK 98
>ref|XP_006649858.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
[Oryza brachyantha]
Length = 105
Score = 106 bits (264), Expect = 6e-21
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS YTT +ELK +F+PFG ++EARLV+D +T RPKGFGFV Y S+ +A+KA+KAMDGRI+
Sbjct: 30 LSFYTTEEELKNIFTPFGAVEEARLVRDNQTGRPKGFGFVKYSSQAEAEKAVKAMDGRIL 89
Query: 416 RGRLIFVEVAK 384
RGRLIFVE+AK
Sbjct: 90 RGRLIFVEIAK 100
>ref|XP_006279867.1| hypothetical protein CARUB_v10028559mg [Capsella rubella]
gi|482548571|gb|EOA12765.1| hypothetical protein
CARUB_v10028559mg [Capsella rubella]
Length = 98
Score = 106 bits (264), Expect = 6e-21
Identities = 50/71 (70%), Positives = 63/71 (88%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS+YTT + L++LFSPFG+I EARL+KD +TQRPKGFGF+T++SE DAQKALKA++G+IV
Sbjct: 14 LSAYTTEQSLRQLFSPFGQITEARLIKDQQTQRPKGFGFITFKSENDAQKALKALNGKIV 73
Query: 416 RGRLIFVEVAK 384
RLIFVE AK
Sbjct: 74 DSRLIFVEAAK 84
>ref|XP_003575643.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Brachypodium distachyon]
Length = 108
Score = 106 bits (264), Expect = 6e-21
Identities = 50/76 (65%), Positives = 62/76 (81%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS YTT +ELK +FSPFG I+EARL++D +T RPKGFGFV Y S++ A+KA+KAMDGRI+
Sbjct: 33 LSFYTTEEELKNIFSPFGAIEEARLMRDNQTGRPKGFGFVKYSSQVAAEKAVKAMDGRII 92
Query: 416 RGRLIFVEVAKTTTPG 369
RGR+IFVE AK G
Sbjct: 93 RGRIIFVETAKERDTG 108
>ref|XP_002864655.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310490|gb|EFH40914.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 95
Score = 106 bits (264), Expect = 6e-21
Identities = 49/71 (69%), Positives = 64/71 (90%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS+YTT++ L++LF+PFG+I EARL++D +TQRPKGFGF+T+ESE DAQ ALKA++G+IV
Sbjct: 14 LSAYTTDQSLRQLFAPFGQIIEARLIRDQQTQRPKGFGFITFESEDDAQNALKALNGKIV 73
Query: 416 RGRLIFVEVAK 384
GRLIFVE AK
Sbjct: 74 NGRLIFVEAAK 84
>ref|XP_007208554.1| hypothetical protein PRUPE_ppa024320mg [Prunus persica]
gi|462404196|gb|EMJ09753.1| hypothetical protein
PRUPE_ppa024320mg [Prunus persica]
Length = 94
Score = 105 bits (262), Expect = 1e-20
Identities = 50/71 (70%), Positives = 63/71 (88%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSS+T N++LK LFSPFG++ EAR+V D TQRPKGFGFVTY+S+++AQKALKAM+GR+V
Sbjct: 14 LSSFTNNEQLKRLFSPFGDVTEARMVVDRITQRPKGFGFVTYKSDVEAQKALKAMNGRMV 73
Query: 416 RGRLIFVEVAK 384
GRLIFVE A+
Sbjct: 74 DGRLIFVEFAQ 84
>ref|XP_004294595.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like isoform 2 [Fragaria vesca subsp. vesca]
Length = 91
Score = 105 bits (261), Expect = 1e-20
Identities = 48/70 (68%), Positives = 63/70 (90%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LSS+T+ ++L+++FSPFG++ EARLV D TQRPKGFGFVTY+SE++AQKA+K MDGR+V
Sbjct: 14 LSSFTSKEKLRQMFSPFGDVTEARLVIDPNTQRPKGFGFVTYKSEVEAQKAIKVMDGRMV 73
Query: 416 RGRLIFVEVA 387
GRL+FVEVA
Sbjct: 74 DGRLLFVEVA 83
>ref|XP_006848599.1| hypothetical protein AMTR_s00168p00066520 [Amborella trichopoda]
gi|548851921|gb|ERN10180.1| hypothetical protein
AMTR_s00168p00066520 [Amborella trichopoda]
Length = 125
Score = 100 bits (250), Expect = 2e-19
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS Y+T + LK+ FSPFGE+ EARLV D T RPKG+GF+ Y+SEI+AQKA+KAMDGR +
Sbjct: 39 LSFYSTEQSLKDAFSPFGEVIEARLVIDKATLRPKGYGFIRYQSEIEAQKAMKAMDGRFL 98
Query: 416 RGRLIFVEVAK 384
GRLIFVEVAK
Sbjct: 99 GGRLIFVEVAK 109
>ref|XP_004981486.1| PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like
isoform X1 [Setaria italica]
gi|514813407|ref|XP_004981487.1| PREDICTED: glycine-rich
RNA-binding protein 4, mitochondrial-like isoform X2
[Setaria italica]
Length = 104
Score = 100 bits (248), Expect = 4e-19
Identities = 47/71 (66%), Positives = 61/71 (85%)
Frame = -3
Query: 596 LSSYTTNKELKELFSPFGEIKEARLVKDGRTQRPKGFGFVTYESEIDAQKALKAMDGRIV 417
LS YTT +ELK++FSPFG +KEARL++D +T R KGFGFV Y S+ +A+KA+KAM GRI+
Sbjct: 30 LSFYTTEEELKDVFSPFGNVKEARLMRDSQTGRLKGFGFVNYSSQAEAEKAVKAMHGRIL 89
Query: 416 RGRLIFVEVAK 384
RGRLIFVE+A+
Sbjct: 90 RGRLIFVEMAQ 100