BLASTX nr result
ID: Cocculus22_contig00013921
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00013921
(269 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002519842.1| pentatricopeptide repeat-containing protein,... 93 4e-17
ref|XP_007210329.1| hypothetical protein PRUPE_ppa002049mg [Prun... 92 6e-17
ref|XP_007039546.1| Pentatricopeptide (PPR) repeat-containing pr... 92 8e-17
ref|XP_006385629.1| hypothetical protein POPTR_0003s08800g [Popu... 92 1e-16
ref|XP_004245879.1| PREDICTED: pentatricopeptide repeat-containi... 91 2e-16
ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi... 90 4e-16
ref|XP_004300258.1| PREDICTED: pentatricopeptide repeat-containi... 89 5e-16
gb|EYU38385.1| hypothetical protein MIMGU_mgv1a002010mg [Mimulus... 89 8e-16
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi... 89 8e-16
gb|EXB99769.1| hypothetical protein L484_023300 [Morus notabilis] 88 1e-15
ref|XP_006352838.1| PREDICTED: pentatricopeptide repeat-containi... 86 4e-15
ref|XP_006485434.1| PREDICTED: pentatricopeptide repeat-containi... 86 5e-15
ref|XP_006436751.1| hypothetical protein CICLE_v10033739mg [Citr... 86 5e-15
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ... 82 6e-14
ref|XP_006600892.1| PREDICTED: pentatricopeptide repeat-containi... 79 7e-13
ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containi... 79 7e-13
ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containi... 79 7e-13
gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indi... 78 1e-12
ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group] g... 78 1e-12
ref|XP_006281680.1| hypothetical protein CARUB_v10027819mg [Caps... 76 6e-12
>ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540888|gb|EEF42446.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 677
Score = 92.8 bits (229), Expect = 4e-17
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSI 101
HTG GTHKFSQGLA+AFASH++K APFRQSEEKAG FVATREDL++W S+ PS+
Sbjct: 619 HTGTGTHKFSQGLANAFASHVEKLAAPFRQSEEKAGCFVATREDLVTWAQSRSPSL 674
>ref|XP_007210329.1| hypothetical protein PRUPE_ppa002049mg [Prunus persica]
gi|462406064|gb|EMJ11528.1| hypothetical protein
PRUPE_ppa002049mg [Prunus persica]
Length = 724
Score = 92.4 bits (228), Expect = 6e-17
Identities = 43/59 (72%), Positives = 51/59 (86%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TG GTHKFSQGLA +FASH++K APFR+SEEKAG FVATREDL+SWV S+ PS A+T+
Sbjct: 666 TGTGTHKFSQGLAHSFASHVEKLAAPFRKSEEKAGRFVATREDLVSWVQSQAPSTAITA 724
>ref|XP_007039546.1| Pentatricopeptide (PPR) repeat-containing protein [Theobroma cacao]
gi|508776791|gb|EOY24047.1| Pentatricopeptide (PPR)
repeat-containing protein [Theobroma cacao]
Length = 711
Score = 92.0 bits (227), Expect = 8e-17
Identities = 43/59 (72%), Positives = 51/59 (86%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TG GTH+FSQGL++AFASHLKK PFRQSEEKAG FVATREDL+ W+ S++PS AVT+
Sbjct: 653 TGTGTHRFSQGLSNAFASHLKKLAVPFRQSEEKAGCFVATREDLVLWLQSRIPSPAVTA 711
>ref|XP_006385629.1| hypothetical protein POPTR_0003s08800g [Populus trichocarpa]
gi|550342759|gb|ERP63426.1| hypothetical protein
POPTR_0003s08800g [Populus trichocarpa]
Length = 721
Score = 91.7 bits (226), Expect = 1e-16
Identities = 41/55 (74%), Positives = 50/55 (90%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPS 104
HTG+GTHKFSQGLA++F SH+KK APFRQSEE+AG FVATREDL++WV S++PS
Sbjct: 659 HTGSGTHKFSQGLANSFDSHVKKLAAPFRQSEERAGHFVATREDLVTWVQSRIPS 713
>ref|XP_004245879.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Solanum lycopersicum]
Length = 711
Score = 90.9 bits (224), Expect = 2e-16
Identities = 41/52 (78%), Positives = 49/52 (94%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSK 113
+TGAGTHKFSQGLA+AFASH++K APF+QSEEKAG F+ATRED++SWVHSK
Sbjct: 655 NTGAGTHKFSQGLANAFASHVEKFAAPFKQSEEKAGFFIATREDVVSWVHSK 706
>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic [Vitis vinifera]
Length = 723
Score = 89.7 bits (221), Expect = 4e-16
Identities = 44/57 (77%), Positives = 49/57 (85%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIA 98
+TG GTHKFSQGLASAFASH+KK APF QSEEKAG FVATREDL+SWV S++ S A
Sbjct: 664 NTGTGTHKFSQGLASAFASHVKKLAAPFTQSEEKAGCFVATREDLVSWVQSRILSPA 720
>ref|XP_004300258.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 716
Score = 89.4 bits (220), Expect = 5e-16
Identities = 43/55 (78%), Positives = 47/55 (85%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSI 101
TGAGTHKFSQGLA +F SH+KK APFRQSEEKAG FVATREDL+SWV S+ SI
Sbjct: 660 TGAGTHKFSQGLAHSFGSHVKKLAAPFRQSEEKAGCFVATREDLVSWVQSQAQSI 714
>gb|EYU38385.1| hypothetical protein MIMGU_mgv1a002010mg [Mimulus guttatus]
Length = 726
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/60 (70%), Positives = 50/60 (83%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
+TGAGTHKFSQGL AFASH++K APFR+SEEKAG F+ATREDL+SWV SK S + +S
Sbjct: 661 NTGAGTHKFSQGLGGAFASHVEKLAAPFRESEEKAGFFIATREDLVSWVQSKAASSSSSS 720
>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
gi|449521148|ref|XP_004167592.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Cucumis sativus]
Length = 710
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/59 (66%), Positives = 52/59 (88%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TGAGTH+FSQGLA++FASH+ K APF+ E++AG FVATREDL++WVHS++PS+A T+
Sbjct: 652 TGAGTHRFSQGLANSFASHVDKLAAPFQLREDRAGWFVATREDLVTWVHSRVPSVAATA 710
>gb|EXB99769.1| hypothetical protein L484_023300 [Morus notabilis]
Length = 710
Score = 87.8 bits (216), Expect = 1e-15
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TG GTHKFSQGLA++FASH +K APFRQSEEKAG FVATREDL+SW S+ P+ AVT+
Sbjct: 653 TGVGTHKFSQGLANSFASHAEKLAAPFRQSEEKAGCFVATREDLVSWAQSRAPT-AVTA 710
>ref|XP_006352838.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Solanum tuberosum]
Length = 711
Score = 86.3 bits (212), Expect = 4e-15
Identities = 40/57 (70%), Positives = 49/57 (85%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIA 98
+TGAGTHKFSQGLA+AFASH++K APF+QSEEKAG F+ATRED++ WV SK + A
Sbjct: 655 NTGAGTHKFSQGLANAFASHVEKLAAPFKQSEEKAGFFIATREDVVLWVQSKAAATA 711
>ref|XP_006485434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Citrus sinensis]
Length = 730
Score = 85.9 bits (211), Expect = 5e-15
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSI 101
TG GTHKFSQGLA+AFASH+ K APFRQSE KAG FVATREDL+SWV ++ SI
Sbjct: 674 TGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARRSSI 728
>ref|XP_006436751.1| hypothetical protein CICLE_v10033739mg [Citrus clementina]
gi|557538947|gb|ESR49991.1| hypothetical protein
CICLE_v10033739mg [Citrus clementina]
Length = 692
Score = 85.9 bits (211), Expect = 5e-15
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSI 101
TG GTHKFSQGLA+AFASH+ K APFRQSE KAG FVATREDL+SWV ++ SI
Sbjct: 636 TGTGTHKFSQGLATAFASHVNKLAAPFRQSEGKAGCFVATREDLVSWVQARRSSI 690
>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509692|gb|AES90834.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 715
Score = 82.4 bits (202), Expect = 6e-14
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TG G HKF+QGL +FASHL+K APFRQSE+K G F+AT+EDL+SWV S PS ++ +
Sbjct: 657 TGTGAHKFAQGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLISWVQSNSPSASIAT 715
>ref|XP_006600892.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like isoform X2 [Glycine max]
Length = 655
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TG G HKF+QGL +FASHL+K APF+QSEEK G F+A+REDL+SWV SK + A +
Sbjct: 597 TGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKIGCFIASREDLVSWVQSKSTAAATAT 655
>ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like isoform X1 [Glycine max]
Length = 714
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVTS 89
TG G HKF+QGL +FASHL+K APF+QSEEK G F+A+REDL+SWV SK + A +
Sbjct: 656 TGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKIGCFIASREDLVSWVQSKSTAAATAT 714
>ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
chloroplastic-like [Glycine max]
Length = 712
Score = 79.0 bits (193), Expect = 7e-13
Identities = 36/56 (64%), Positives = 44/56 (78%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIA 98
TG G HKF+QGL +FASHL+K APF+QSEEK G F+A+REDL+SWV SK + A
Sbjct: 656 TGTGAHKFAQGLNISFASHLRKLAAPFKQSEEKVGCFIASREDLVSWVQSKSTAAA 711
>gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
Length = 701
Score = 78.2 bits (191), Expect = 1e-12
Identities = 35/60 (58%), Positives = 50/60 (83%), Gaps = 2/60 (3%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKM--PSIAV 95
+TG+ THKF+QGLA+A ASHL++ GAPFR S+ + GSF+++R+DLLSW+H+ M P +AV
Sbjct: 642 YTGSSTHKFAQGLATAVASHLEQVGAPFRASDSQLGSFISSRDDLLSWLHTTMSSPDVAV 701
>ref|NP_001051946.1| Os03g0856100 [Oryza sativa Japonica Group]
gi|41393252|gb|AAS01975.1| putative chloroplastic
RNA-binding protein, with alternative splicing isoforms
[Oryza sativa Japonica Group]
gi|113550417|dbj|BAF13860.1| Os03g0856100 [Oryza sativa
Japonica Group] gi|222626198|gb|EEE60330.1| hypothetical
protein OsJ_13428 [Oryza sativa Japonica Group]
Length = 640
Score = 78.2 bits (191), Expect = 1e-12
Identities = 35/60 (58%), Positives = 50/60 (83%), Gaps = 2/60 (3%)
Frame = -2
Query: 268 HTGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKM--PSIAV 95
+TG+ THKF+QGLA+A ASHL++ GAPFR S+ + GSF+++R+DLLSW+H+ M P +AV
Sbjct: 581 YTGSSTHKFAQGLATAVASHLEQVGAPFRASDSQLGSFISSRDDLLSWLHTTMSSPDVAV 640
>ref|XP_006281680.1| hypothetical protein CARUB_v10027819mg [Capsella rubella]
gi|482550384|gb|EOA14578.1| hypothetical protein
CARUB_v10027819mg [Capsella rubella]
Length = 715
Score = 75.9 bits (185), Expect = 6e-12
Identities = 35/58 (60%), Positives = 47/58 (81%)
Frame = -2
Query: 265 TGAGTHKFSQGLASAFASHLKKSGAPFRQSEEKAGSFVATREDLLSWVHSKMPSIAVT 92
TG GTH+FSQGLA++FA HL++ APFRQS ++AG FVAT+EDL+SW+ SK P + +
Sbjct: 658 TGTGTHRFSQGLANSFALHLQQLSAPFRQS-DRAGIFVATKEDLVSWLESKFPPLVAS 714