BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00013654
         (831 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772...   306   1e-94
ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752...   310   2e-94
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     312   2e-92
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             296   7e-92
emb|CAN71870.1| hypothetical protein VITISV_044169 [Vitis vinifera]   311   9e-91
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         308   1e-90
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   306   2e-90
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   296   5e-90
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   296   5e-90
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         307   1e-89
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   303   2e-89
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              311   4e-89
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   305   5e-89
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   301   9e-89
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]   321   1e-88
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   303   2e-88
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        302   3e-88
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   302   4e-88
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       305   9e-88
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  299   2e-87

>ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772114 [Setaria italica]
          Length = 1246

 Score =  306 bits (783), Expect(2) = 1e-94
 Identities = 144/186 (77%), Positives = 166/186 (89%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+ +PGA++PNR AY++N EETKE+Q+QV ELL KG V+ESLSPCAVPVLLV 
Sbjct: 649  LRGIEHQIDLVPGASLPNRPAYRTNPEETKEIQQQVKELLDKGYVRESLSPCAVPVLLVP 708

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+N I V+YRHPIP LDDMLDEL GS IF KIDLRSGYHQIRMK+GD
Sbjct: 709  KKDGSWRMCVDCRAINAITVRYRHPIPRLDDMLDELSGSTIFTKIDLRSGYHQIRMKIGD 768

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKT FKTK+GLYE LVMP GLTNAPSTFMRLMNHVLRAFI +FVVVYFDDIL+YSKS  
Sbjct: 769  EWKTTFKTKFGLYEWLVMPSGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIYSKSFD 828

Query: 19   EHIEHL 2
            EH++H+
Sbjct: 829  EHLDHI 834



 Score = 68.6 bits (166), Expect(2) = 1e-94
 Identities = 33/77 (42%), Positives = 49/77 (63%)
 Frame = -1

Query: 786 KKMSDERRKKKNENFFAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLPSVAISLL* 607
           K  S  ++ ++NE  F   S ++    T  P  VL++KE   ST +L +SLPSV + LL 
Sbjct: 573 KPHSTSKQLRQNECLFVSRSALREVKNTTAPFFVLLHKEVLLSTTDLPSSLPSVVLDLLQ 632

Query: 606 EYGDLFPEEVPSGLPPL 556
           ++ D+FP+EVP+GLPPL
Sbjct: 633 DFKDVFPDEVPAGLPPL 649


>ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752491 [Setaria italica]
          Length = 1295

 Score =  310 bits (795), Expect(2) = 2e-94
 Identities = 146/186 (78%), Positives = 168/186 (90%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+ +PGA++PNR AY++N EETKE+Q+QV ELL KG V+ESLSPCAVPVLLV 
Sbjct: 772  LRGIEHQIDLVPGASLPNRPAYRTNPEETKEIQQQVKELLDKGYVRESLSPCAVPVLLVP 831

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+N I V+YRHPIP LDDMLDEL GS IF KIDLRSGYHQIRMK+GD
Sbjct: 832  KKDGSWRMCVDCRAINAITVRYRHPIPRLDDMLDELSGSTIFTKIDLRSGYHQIRMKIGD 891

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMNHVLRAFI +FVVVYFDDIL+YSKS  
Sbjct: 892  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIYSKSFD 951

Query: 19   EHIEHL 2
            EH++H+
Sbjct: 952  EHLDHI 957



 Score = 63.2 bits (152), Expect(2) = 2e-94
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
 Frame = -1

Query: 825 NEIEKQEFVEKAEKKMSDERRKKKNE----------NFFAKESDVKRALFTNR-PMIVLV 679
           +++ + +  E  ++K+S+     K E          +  +K+      LF +R P  VL+
Sbjct: 672 SDVARMKREESEKRKLSEAPNTSKGETPTPSSHIKPHSTSKQLRQNECLFVSRTPFFVLL 731

Query: 678 YKEACSSTNELTNSLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           +KE   ST +L++SLPSV + LL ++ D+FP+EVP+GLPPL
Sbjct: 732 HKEVLLSTTDLSSSLPSVVLDLLQDFKDVFPDEVPAGLPPL 772


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  312 bits (800), Expect(2) = 2e-92
 Identities = 146/186 (78%), Positives = 168/186 (90%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+ +PGAT+PNR AY++N EETKE+QRQV  LL KG V+ESLSPCAVPV+LV 
Sbjct: 706  LRGIEHQIDLIPGATLPNRPAYRTNPEETKEIQRQVQALLDKGYVRESLSPCAVPVILVP 765

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI V+YRHPIP LDDMLDEL GS IF KIDLRSG+HQIRMK+GD
Sbjct: 766  KKDGSWRMCVDCRAINNITVRYRHPIPRLDDMLDELSGSMIFSKIDLRSGFHQIRMKIGD 825

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMNHVLRAFI +FVVVYFDDIL+YSK+L 
Sbjct: 826  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGKFVVVYFDDILIYSKTLE 885

Query: 19   EHIEHL 2
            EH+ H+
Sbjct: 886  EHVAHI 891



 Score = 54.3 bits (129), Expect(2) = 2e-92
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
 Frame = -1

Query: 831 KKNEIEKQEFVEKAEKKMSDERRKKKNENFF-----AKESDVKRALFTNRPMIVLVYKEA 667
           K N     + V ++ K    + +K++ EN       ++  DV+R     + + +LV K+ 
Sbjct: 613 KNNLSAPHKSVSESHKPNMRDNKKREGENLVMIATKSEMRDVRRN--PEQVLFILVCKDT 670

Query: 666 CSSTNELTNSLPSVAISLL*EYGDLFPEEVPSGLPPL 556
             S N+LT S+PSV   +L EY D+FPEE P GLPPL
Sbjct: 671 LLSANDLT-SVPSVVARVLQEYEDVFPEETPVGLPPL 706


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  296 bits (759), Expect(2) = 7e-92
 Identities = 136/186 (73%), Positives = 166/186 (89%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEH I+  PGA++PNR AY+SN ++T+E+QRQVAEL+SKG V+ESLSPCAVP++LV 
Sbjct: 593  IRGIEHHIDLNPGASLPNRPAYRSNPQQTQEIQRQVAELISKGWVRESLSPCAVPIILVP 652

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC D +A++NI +KYRHPIP LDD+LDEL G+C+F KIDL+SGYHQIR++ GD
Sbjct: 653  KKDGSWRMCTDCRAISNITIKYRHPIPRLDDLLDELFGACLFSKIDLKSGYHQIRIREGD 712

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE +VMPFGLTNAPSTFMRLMNHVLR F+ +FVVVYFDDIL+YSK+L 
Sbjct: 713  EWKTAFKTKFGLYEWMVMPFGLTNAPSTFMRLMNHVLREFLGKFVVVYFDDILIYSKNLD 772

Query: 19   EHIEHL 2
            +H  HL
Sbjct: 773  DHCIHL 778



 Score = 68.6 bits (166), Expect(2) = 7e-92
 Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = -1

Query: 816 EKQEFVEKAEKKMSDERRKKKNENFFAKESDVKRALFTNRPMIVLVYKEA-CSSTNELTN 640
           EK++  EK EKK +D+R KK  ++  AK  DVK A+ +++P+ +L  KE    +T     
Sbjct: 508 EKEKEKEKNEKKKNDKREKK--QSLIAKIRDVKEAIVSHQPLYLLFCKEVPLLTTISNEK 565

Query: 639 SLPSVAISLL*EYGDLFPEEVPSGLPPL 556
            LP+   SLL E+ +LFPEEVPSGLPP+
Sbjct: 566 KLPNCIESLLQEFKELFPEEVPSGLPPI 593


>emb|CAN71870.1| hypothetical protein VITISV_044169 [Vitis vinifera]
          Length = 750

 Score =  311 bits (796), Expect(2) = 9e-91
 Identities = 151/186 (81%), Positives = 167/186 (89%)
 Frame = -3

Query: 559 IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
           IRGIEHQI+F+ GATIPNR AY+SN EET ELQRQV ELL+KG V+ES+SPCA+PVLLV 
Sbjct: 52  IRGIEHQIDFVLGATIPNRPAYKSNPEETTELQRQVEELLTKGHVRESMSPCAMPVLLVP 111

Query: 379 RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
           +KDG+WRMC+D KA+NNI+VKYRHPI  LDDMLDELHGSC+F KIDL+S YHQIRMK GD
Sbjct: 112 KKDGTWRMCVDFKAINNIMVKYRHPILRLDDMLDELHGSCVFTKIDLKSRYHQIRMKEGD 171

Query: 199 EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
           EWKTAFKTKYGLYE LVMPFGLTNAPSTFMRLMN  LRAFI +FVVVYFDDILVYSK+L 
Sbjct: 172 EWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNDALRAFIGRFVVVYFDDILVYSKNLD 231

Query: 19  EHIEHL 2
           EHI HL
Sbjct: 232 EHINHL 237



 Score = 50.4 bits (119), Expect(2) = 9e-91
 Identities = 26/70 (37%), Positives = 37/70 (52%)
 Frame = -1

Query: 765 RKKKNENFFAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLPSVAISLL*EYGDLFP 586
           ++KK  +F+ K SDVK   +TN+P+ VL+YK                      EY D+FP
Sbjct: 4   KQKKQGSFYTKASDVKNVFYTNQPIFVLLYKY---------------------EYEDVFP 42

Query: 585 EEVPSGLPPL 556
            +VPS LPP+
Sbjct: 43  NDVPSELPPI 52


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  308 bits (788), Expect(2) = 1e-90
 Identities = 141/186 (75%), Positives = 168/186 (90%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPCAVPV+LV 
Sbjct: 706  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCAVPVILVP 765

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDG+WRMC+D +A+NNI ++YRHPIP LDDMLDEL G+ +F K+DLRSGYHQIRMK+GD
Sbjct: 766  KKDGTWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGAIVFSKVDLRSGYHQIRMKLGD 825

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YSKS+ 
Sbjct: 826  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGKFVVVYFDDILIYSKSMD 885

Query: 19   EHIEHL 2
            EH++H+
Sbjct: 886  EHVDHM 891



 Score = 53.1 bits (126), Expect(2) = 1e-90
 Identities = 26/69 (37%), Positives = 38/69 (55%)
 Frame = -1

Query: 762 KKKNENFFAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLPSVAISLL*EYGDLFPE 583
           K K     A ++DV     +      LV K+A  S  ++ +SLP V  ++L EY D+FP 
Sbjct: 638 KLKGHCLLATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSDVFPS 697

Query: 582 EVPSGLPPL 556
           E+P GLPP+
Sbjct: 698 EIPEGLPPI 706


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  306 bits (784), Expect(2) = 2e-90
 Identities = 142/186 (76%), Positives = 165/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPCAVPV+LV 
Sbjct: 703  VRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVP 762

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +F K+DLRSGYHQIRMK+GD
Sbjct: 763  KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGD 822

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLR FI +FVVVYFDDIL+YSKS+ 
Sbjct: 823  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMG 882

Query: 19   EHIEHL 2
            EH  HL
Sbjct: 883  EHFNHL 888



 Score = 53.9 bits (128), Expect(2) = 2e-90
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
 Frame = -1

Query: 795 KAEKKMSDERRKKKNENF-----FAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLP 631
           +++KK   + +K +  N       A +SD+   + +      LV K+A  S +++ +SLP
Sbjct: 619 ESDKKAQSDGKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLP 678

Query: 630 SVAISLL*EYGDLFPEEVPSGLPPL 556
               ++L EY D+FP+EVP GLPP+
Sbjct: 679 PAVANILQEYSDVFPKEVPPGLPPV 703



 Score = 77.0 bits (188), Expect = 8e-12
 Identities = 39/78 (50%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
 Frame = -3

Query: 229  YHQIRMKVGDEWKT--AFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVY 56
            +H+    +GD+  T  +    YGLYE  VM FGLTNAP+ FM LMN V   ++++FVVV+
Sbjct: 1603 HHKFAATIGDDRATNPSGFASYGLYEFTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVF 1662

Query: 55   FDDILVYSKSLYEHIEHL 2
             DDILVYS+S  +H  HL
Sbjct: 1663 IDDILVYSQSEEDHQHHL 1680


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  296 bits (759), Expect(2) = 5e-90
 Identities = 139/186 (74%), Positives = 164/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+F+PG+ +PNR AY+SN EETKELQRQV ELL KG V+ES+SPC+VPVLLV 
Sbjct: 686  LRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLVKGFVRESMSPCSVPVLLVP 745

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDG+WRMC+D +A+N I VKYRHPIP LDDMLD+L GS IF KIDL+SGYHQIR+  GD
Sbjct: 746  KKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGD 805

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTKYGLYE LVMPFGLTNAPSTFMRLMNHV + F  +F+VVYFDDIL++S++L 
Sbjct: 806  EWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQNLD 865

Query: 19   EHIEHL 2
            EH+EHL
Sbjct: 866  EHLEHL 871



 Score = 62.4 bits (150), Expect(2) = 5e-90
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = -1

Query: 816 EKQEFVEKAEKKMSD--ERRKKKNENFFAKESDVKRALFTNRPMIVLVYKEACSSTNELT 643
           E +E V K  K   +  E ++KKNE+ + K  +   A     P+I+L YKE   +  +LT
Sbjct: 598 EVKEGVSKKIKCFGERKEAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLT 657

Query: 642 NSLPSVAISLL*EYGDLFPEEVPSGLPPL 556
            SLP+   SLL  + D+FP++ P GLPPL
Sbjct: 658 PSLPNSVSSLLQNFEDVFPDDTPKGLPPL 686


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  296 bits (759), Expect(2) = 5e-90
 Identities = 139/186 (74%), Positives = 164/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+F+PG+ +PNR AY+SN EETKELQRQV ELL KG V+ES+SPC+VPVLLV 
Sbjct: 686  LRGIEHQIDFVPGSQLPNRPAYRSNPEETKELQRQVEELLVKGFVRESMSPCSVPVLLVP 745

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDG+WRMC+D +A+N I VKYRHPIP LDDMLD+L GS IF KIDL+SGYHQIR+  GD
Sbjct: 746  KKDGTWRMCVDCRAINKITVKYRHPIPRLDDMLDQLCGSKIFSKIDLKSGYHQIRLNPGD 805

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTKYGLYE LVMPFGLTNAPSTFMRLMNHV + F  +F+VVYFDDIL++S++L 
Sbjct: 806  EWKTAFKTKYGLYEWLVMPFGLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQNLD 865

Query: 19   EHIEHL 2
            EH+EHL
Sbjct: 866  EHLEHL 871



 Score = 62.4 bits (150), Expect(2) = 5e-90
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = -1

Query: 816 EKQEFVEKAEKKMSD--ERRKKKNENFFAKESDVKRALFTNRPMIVLVYKEACSSTNELT 643
           E +E V K  K   +  E ++KKNE+ + K  +   A     P+I+L YKE   +  +LT
Sbjct: 598 EVKEGVSKKIKCFGERKEAKEKKNESLYIKAKECLNARREGLPIILLTYKEILINFEQLT 657

Query: 642 NSLPSVAISLL*EYGDLFPEEVPSGLPPL 556
            SLP+   SLL  + D+FP++ P GLPPL
Sbjct: 658 PSLPNSVSSLLQNFEDVFPDDTPKGLPPL 686


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  307 bits (787), Expect(2) = 1e-89
 Identities = 143/186 (76%), Positives = 167/186 (89%)
 Frame = -3

Query: 559 IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
           IRGIEHQI+ +PGA++PNR  Y++N EETKE+QRQ+ ELL KG V+ESLSPC+VPVLLV 
Sbjct: 364 IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQMQELLDKGYVRESLSPCSVPVLLVP 423

Query: 379 RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
           +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +FYKIDLRSGYHQIRMK+GD
Sbjct: 424 KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFYKIDLRSGYHQIRMKLGD 483

Query: 199 EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
           EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YS+S+ 
Sbjct: 484 EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIE 543

Query: 19  EHIEHL 2
           +H  HL
Sbjct: 544 DHHGHL 549



 Score = 50.4 bits (119), Expect(2) = 1e-89
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = -1

Query: 801 VEKAEKKMSDERRKKKNEN------FFAKESDVKRALFTNRPMIVLVYKEACSSTNELTN 640
           +EK +KK ++  +  KNE       F A +SD+            LV KE      +   
Sbjct: 277 LEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPI 336

Query: 639 SLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           SLP    +LL EY D+FP+EVP GLPP+
Sbjct: 337 SLPPPVTNLLQEYADIFPKEVPPGLPPI 364


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  303 bits (775), Expect(2) = 2e-89
 Identities = 140/186 (75%), Positives = 164/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPCAVPV+LV 
Sbjct: 682  VRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVP 741

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +F K++LRSGYHQI MK+GD
Sbjct: 742  KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSIVFSKVELRSGYHQIHMKLGD 801

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLR FI +FVVVYFDDIL+YSKS+ 
Sbjct: 802  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMG 861

Query: 19   EHIEHL 2
            EH  HL
Sbjct: 862  EHFNHL 867



 Score = 53.9 bits (128), Expect(2) = 2e-89
 Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
 Frame = -1

Query: 795 KAEKKMSDERRKKKNENF-----FAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLP 631
           +++KK   + +K +  N       A +SD+   + +      LV K+A  S +++ +SLP
Sbjct: 598 ESDKKAQSDGKKPETINLKPKCLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLP 657

Query: 630 SVAISLL*EYGDLFPEEVPSGLPPL 556
               ++L EY D+FP+EVP GLPP+
Sbjct: 658 PAVANILQEYSDVFPKEVPPGLPPV 682


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  311 bits (797), Expect(2) = 4e-89
 Identities = 146/186 (78%), Positives = 168/186 (90%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+F+PGA++PNR AY++N  ETKEL++QV EL+ +G ++ES+SPCAVPVLLV 
Sbjct: 895  IRGIEHQIDFVPGASLPNRPAYRTNPVETKELEKQVTELMERGHIRESMSPCAVPVLLVP 954

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI VKYRHPIP LDDMLDELHGS IF K+DL+SGYHQIRMK GD
Sbjct: 955  KKDGSWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSSIFSKVDLKSGYHQIRMKEGD 1014

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKT  GLYE LVMPFGLTNAPSTFMRLMNHVLRAFI +FV+VYFDDILVYSKSL 
Sbjct: 1015 EWKTAFKTIQGLYEWLVMPFGLTNAPSTFMRLMNHVLRAFIGRFVIVYFDDILVYSKSLE 1074

Query: 19   EHIEHL 2
            EH+EHL
Sbjct: 1075 EHVEHL 1080



 Score = 44.7 bits (104), Expect(2) = 4e-89
 Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = -1

Query: 783  KMSDERRKK---KNENFFAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLPSVAISL 613
            ++S + RKK   K  N    ES  K + F +  ++  V+KE   S      ++PS    L
Sbjct: 818  QLSMKMRKKQTVKPSNLMINESKQKGSGFQSSKLL-FVFKETLMSLTNPEQAIPSKIKFL 876

Query: 612  L*EYGDLFPEEVPSGLPPL 556
            L +Y D+FPEE P GLPP+
Sbjct: 877  LQDYTDVFPEENPVGLPPI 895


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  305 bits (781), Expect(2) = 5e-89
 Identities = 143/186 (76%), Positives = 166/186 (89%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPC+VPVLLV 
Sbjct: 731  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVP 790

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +F KIDLRSGYHQIRMK+GD
Sbjct: 791  KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGD 850

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YS+S+ 
Sbjct: 851  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIE 910

Query: 19   EHIEHL 2
            +H  HL
Sbjct: 911  DHHGHL 916



 Score = 50.4 bits (119), Expect(2) = 5e-89
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = -1

Query: 801 VEKAEKKMSDERRKKKNEN------FFAKESDVKRALFTNRPMIVLVYKEACSSTNELTN 640
           +EK +KK ++  +  KNE       F A +SD+            LV KE      +   
Sbjct: 644 LEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPI 703

Query: 639 SLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           SLP    +LL EY D+FP+EVP GLPP+
Sbjct: 704 SLPPPVTNLLQEYADIFPKEVPPGLPPI 731


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  301 bits (770), Expect(2) = 9e-89
 Identities = 140/186 (75%), Positives = 164/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+ RQV ELL KG ++ESLSPCAVP++LV 
Sbjct: 747  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVP 806

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDG+ RMC+D + +NNI ++YRHPIP LDDMLDEL GS IF K+DLRSGYHQIRMK+GD
Sbjct: 807  KKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSTIFSKVDLRSGYHQIRMKLGD 866

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKT FKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YSKSL 
Sbjct: 867  EWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSKSLE 926

Query: 19   EHIEHL 2
            EH+EHL
Sbjct: 927  EHLEHL 932



 Score = 53.9 bits (128), Expect(2) = 9e-89
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
 Frame = -1

Query: 831 KKNEIEKQEFVEKAEKKMSDERRKK---------KNENFFAKESDVKRALFTNRPMIVLV 679
           +KN+ E Q   ++ E++M     K+         K+    A +SD+    F+       V
Sbjct: 647 EKNKSENQIVAKEFEQQMQSNNNKQSSVACEIKLKSACLLATKSDIDDLDFSKSVCYAFV 706

Query: 678 YKEACSSTNELTNSLPSVAISLL*EYGDLFPEEVPSGLPPL 556
            KEA  S  ++ +SLP    ++L E+ D+FP++VP GLPP+
Sbjct: 707 CKEALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPPI 747


>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
          Length = 960

 Score =  321 bits (823), Expect(2) = 1e-88
 Identities = 154/186 (82%), Positives = 170/186 (91%)
 Frame = -3

Query: 559 IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
           IRGIEHQI+F+PGATIPNR AY+SNLEETKELQRQV ELL+KG V+ES+ PCA+ VLLV 
Sbjct: 183 IRGIEHQIDFVPGATIPNRLAYRSNLEETKELQRQVEELLTKGHVRESMRPCAILVLLVP 242

Query: 379 RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
           +KDG+WRMC+D +A+NNI VKYRHPIP LDDMLDELHGSC+F KIDL+SGYHQIRMK GD
Sbjct: 243 KKDGTWRMCVDCRAINNITVKYRHPIPRLDDMLDELHGSCVFIKIDLKSGYHQIRMKEGD 302

Query: 199 EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
           EWKTAFKTKYGLYE LVMPFGLTNA STFMRLMNHVLRAFI +FVVVYFDDILVYSK+L 
Sbjct: 303 EWKTAFKTKYGLYEWLVMPFGLTNALSTFMRLMNHVLRAFIGRFVVVYFDDILVYSKNLD 362

Query: 19  EHIEHL 2
           EHI HL
Sbjct: 363 EHINHL 368



 Score = 32.7 bits (73), Expect(2) = 1e-88
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 606 EYGDLFPEEVPSGLPPL 556
           EY D+FP +VPSGLPP+
Sbjct: 167 EYEDVFPNDVPSGLPPI 183


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  303 bits (776), Expect(2) = 2e-88
 Identities = 141/186 (75%), Positives = 166/186 (89%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPC++PVLLV 
Sbjct: 731  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSIPVLLVP 790

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +F KIDLRSGYHQIRMK+GD
Sbjct: 791  KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGD 850

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTF+RLMN VLRAFI +FVVVYFDDIL+YS+S+ 
Sbjct: 851  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGRFVVVYFDDILIYSRSIE 910

Query: 19   EHIEHL 2
            +H  HL
Sbjct: 911  DHHGHL 916



 Score = 50.4 bits (119), Expect(2) = 2e-88
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = -1

Query: 801 VEKAEKKMSDERRKKKNEN------FFAKESDVKRALFTNRPMIVLVYKEACSSTNELTN 640
           +EK +KK ++  +  KNE       F A +SD+            LV KE      +   
Sbjct: 644 LEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPI 703

Query: 639 SLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           SLP    +LL EY D+FP+EVP GLPP+
Sbjct: 704 SLPPPVTNLLQEYADIFPKEVPPGLPPI 731


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  302 bits (773), Expect(2) = 3e-88
 Identities = 140/186 (75%), Positives = 163/186 (87%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            +RGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPCAVPV+LV 
Sbjct: 797  VRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPVILVP 856

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NN  ++YRHPIP LDDMLDEL GS +F K+DLRSGYHQIRMK+GD
Sbjct: 857  KKDGSWRMCVDCRAINNNTIRYRHPIPRLDDMLDELSGSIVFSKVDLRSGYHQIRMKLGD 916

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKT FKTK+GLYE LVMPFGLTNAPSTFMRLMN VLR FI +FVVVYFDDIL+YSKS+ 
Sbjct: 917  EWKTTFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRPFIGKFVVVYFDDILIYSKSMG 976

Query: 19   EHIEHL 2
            EH  HL
Sbjct: 977  EHFNHL 982



 Score = 50.8 bits (120), Expect(2) = 3e-88
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
 Frame = -1

Query: 795 KAEKKMSDERRKKKNENF-----FAKESDVKRALFTNRPMIVLVYKEACSSTNELTNSLP 631
           +++KK   + +K +  N       A +SD+   + +      LV K+A  S +++ +SLP
Sbjct: 713 ESDKKAQSDGKKPETINLKPRYLLATKSDINELIASPSVAYALVCKDALISLHDMQHSLP 772

Query: 630 SVAISLL*EYGDLFPEEVPSGLP 562
               ++L EY D+FP+EVP GLP
Sbjct: 773 PAVANILQEYSDVFPKEVPPGLP 795


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  302 bits (773), Expect(2) = 4e-88
 Identities = 142/186 (76%), Positives = 165/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPC+VPVLLV 
Sbjct: 627  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVP 686

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +F KIDL SGYHQIRMK+GD
Sbjct: 687  KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLCSGYHQIRMKLGD 746

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YS+S+ 
Sbjct: 747  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIE 806

Query: 19   EHIEHL 2
            +H  HL
Sbjct: 807  DHHGHL 812



 Score = 50.4 bits (119), Expect(2) = 4e-88
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = -1

Query: 801 VEKAEKKMSDERRKKKNEN------FFAKESDVKRALFTNRPMIVLVYKEACSSTNELTN 640
           +EK +KK ++  +  KNE       F A +SD+            LV KE      +   
Sbjct: 540 LEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPI 599

Query: 639 SLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           SLP    +LL EY D+FP+EVP GLPP+
Sbjct: 600 SLPPPVTNLLQEYADIFPKEVPPGLPPI 627


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  305 bits (781), Expect(2) = 9e-88
 Identities = 143/186 (76%), Positives = 166/186 (89%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+QRQV ELL KG V+ESLSPC+VPVLLV 
Sbjct: 731  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRESLSPCSVPVLLVP 790

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDGSWRMC+D +A+NNI ++YRHPIP LDDMLDEL GS +F KIDLRSGYHQIRMK+GD
Sbjct: 791  KKDGSWRMCVDCRAINNITIRYRHPIPRLDDMLDELSGSLVFSKIDLRSGYHQIRMKLGD 850

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YS+S+ 
Sbjct: 851  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSIE 910

Query: 19   EHIEHL 2
            +H  HL
Sbjct: 911  DHHGHL 916



 Score = 46.2 bits (108), Expect(2) = 9e-88
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = -1

Query: 801 VEKAEKKMSDERRKKKNEN------FFAKESDVKRALFTNRPMIVLVYKEACSSTNELTN 640
           +EK +KK ++  +  KNE       F A +SD+            LV KE      +   
Sbjct: 644 LEKHKKKPTNSVQNNKNEIKLKGSCFIATKSDLDEVDTDTVFCYALVCKETLFPIEDTPI 703

Query: 639 SLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           SL     +LL EY D+FP+EVP GLPP+
Sbjct: 704 SLRPPVTNLLQEYADIFPKEVPPGLPPI 731


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  299 bits (765), Expect(2) = 2e-87
 Identities = 138/186 (74%), Positives = 165/186 (88%)
 Frame = -3

Query: 559  IRGIEHQINFLPGATIPNRTAYQSNLEETKELQRQVAELLSKGLVKESLSPCAVPVLLVK 380
            IRGIEHQI+ +PGA++PNR  Y++N EETKE+ RQV ELL KG ++ESLSPCAVP++LV 
Sbjct: 759  IRGIEHQIDLIPGASLPNRAPYRTNPEETKEIMRQVQELLDKGYIRESLSPCAVPIILVP 818

Query: 379  RKDGSWRMCIDGKAVNNIIVKYRHPIPHLDDMLDELHGSCIFYKIDLRSGYHQIRMKVGD 200
            +KDG+ RMC+D + +NNI ++YRHPIP LDDMLDEL GS IF K+DLRSGYHQIRMK+GD
Sbjct: 819  KKDGTSRMCVDCRGINNITIRYRHPIPRLDDMLDELSGSIIFSKVDLRSGYHQIRMKLGD 878

Query: 199  EWKTAFKTKYGLYEALVMPFGLTNAPSTFMRLMNHVLRAFINQFVVVYFDDILVYSKSLY 20
            EWKTAFKTK+GLYE LVMPFGLTNAPSTFMRLMN VLRAFI +FVVVYFDDIL+YS+SL 
Sbjct: 879  EWKTAFKTKFGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGRFVVVYFDDILIYSRSLE 938

Query: 19   EHIEHL 2
            +H++HL
Sbjct: 939  DHLDHL 944



 Score = 51.6 bits (122), Expect(2) = 2e-87
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
 Frame = -1

Query: 828 KNEIEKQEFVE--KAEKKMSD--ERRKKKNENFFAKESDVKRALFTNRPMIVLVYKEACS 661
           +N+I  +EF +  K  K  S      K K+    A +SD+     T       V KE   
Sbjct: 665 ENQIVAKEFEQHNKPNKSSSSVASEIKLKSGCLLATKSDITDLDITTSVCYAFVCKEVLF 724

Query: 660 STNELTNSLPSVAISLL*EYGDLFPEEVPSGLPPL 556
           S  ++ +SLP   I++L E+ D+FP++VP GLPP+
Sbjct: 725 SFEDMPSSLPPAVINILQEFADVFPQDVPPGLPPI 759