BLASTX nr result
ID: Cocculus22_contig00013455
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00013455
(482 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006596826.1| PREDICTED: uncharacterized protein LOC102662... 102 1e-34
gb|ABN08587.1| Polynucleotidyl transferase, Ribonuclease H fold ... 102 9e-34
gb|ABD28305.1| RNA-directed DNA polymerase (Reverse transcriptas... 103 2e-33
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 105 2e-31
emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group] 94 6e-31
dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa I... 95 8e-31
emb|CAH68019.1| H0807C06-H0308C08.6 [Oryza sativa Indica Group] 93 1e-30
dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa I... 94 2e-30
ref|XP_007044383.1| DNA/RNA polymerases superfamily protein [The... 98 2e-30
emb|CAH67149.1| OSIGBa0122F23.6 [Oryza sativa Indica Group] 92 2e-30
emb|CAH66013.1| OSIGBa0093M15.3 [Oryza sativa Indica Group] 94 2e-30
ref|XP_007199150.1| hypothetical protein PRUPE_ppa019626mg, part... 95 2e-30
gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subc... 92 3e-30
gb|AAM01161.2|AC113336_13 Putative retroelement [Oryza sativa Ja... 94 3e-30
emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group] 93 7e-30
emb|CAE02906.1| OSJNBb0045P24.14 [Oryza sativa Japonica Group] 94 7e-30
ref|XP_007049449.1| DNA/RNA polymerases superfamily protein [The... 100 9e-30
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic... 96 1e-29
emb|CAH66097.1| OSIGBa0114I04.4 [Oryza sativa Indica Group] 94 1e-29
gb|ABA97773.1| retrotransposon protein, putative, Ty3-gypsy subc... 93 1e-29
>ref|XP_006596826.1| PREDICTED: uncharacterized protein LOC102662829 [Glycine max]
Length = 643
Score = 102 bits (254), Expect(3) = 1e-34
Identities = 50/73 (68%), Positives = 60/73 (82%)
Frame = -1
Query: 221 IGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSNHQS 42
+G ++QE V+AYASRQL+ HE NY THDLELV VVFALKI RHY YG +F ++S+H+S
Sbjct: 441 LGCVLMQEGRVVAYASRQLRPHEVNYPTHDLELVAVVFALKIWRHYLYGTRFEVFSDHKS 500
Query: 41 LKYLFFQKELNMR 3
LKYLF QKELNMR
Sbjct: 501 LKYLFDQKELNMR 513
Score = 52.0 bits (123), Expect(3) = 1e-34
Identities = 24/47 (51%), Positives = 30/47 (63%)
Frame = -2
Query: 349 FV*TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
FV C+ +F ELK+RLTTA +LILP+P +Y D SG GCV
Sbjct: 398 FVWNEKCDQSFQELKRRLTTAPVLILPDPKRPFEVYCDASGQGLGCV 444
Score = 38.5 bits (88), Expect(3) = 1e-34
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGL GYYRKF+E FSKLA
Sbjct: 365 RSFLGLTGYYRKFIEGFSKLA 385
>gb|ABN08587.1| Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 482
Score = 102 bits (254), Expect(3) = 9e-34
Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Frame = -1
Query: 236 CFRNKIGLC-VIQEDG-VIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFT 63
C +K+GL V+ +DG V+AYASRQL+I+E+NY THDLEL VVF LKI RHY YG +F
Sbjct: 69 CDASKLGLGGVLMQDGKVVAYASRQLRIYEKNYPTHDLELAAVVFVLKIWRHYLYGSRFE 128
Query: 62 LYSNHQSLKYLFFQKELNMR 3
++S+H+SLKYLF QKELNMR
Sbjct: 129 VFSDHKSLKYLFDQKELNMR 148
Score = 48.5 bits (114), Expect(3) = 9e-34
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -2
Query: 349 FV*TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVS 230
FV CE++F ELKKRLTTA +LILP+ DE V+Y D S
Sbjct: 33 FVWDVHCENSFSELKKRLTTAPVLILPKSDELFVVYCDAS 72
Score = 38.9 bits (89), Expect(3) = 9e-34
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -3
Query: 444 FLGLAGYYRKFVESFSKLAS*PIDQI 367
FLGLAGYYR+F+E FSKLA P+ Q+
Sbjct: 2 FLGLAGYYRRFIEEFSKLAL-PLTQL 26
>gb|ABD28305.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 579
Score = 103 bits (258), Expect(3) = 2e-33
Identities = 51/80 (63%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Frame = -1
Query: 236 CFRNKIGL--CVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFT 63
C +K+GL ++QE V+AYASRQL+IHE+NY THDLEL VVF LKI RHY YG +F
Sbjct: 499 CDASKLGLGGVLMQEGKVVAYASRQLRIHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFE 558
Query: 62 LYSNHQSLKYLFFQKELNMR 3
++S+H+SLKY F QKELNMR
Sbjct: 559 VFSDHKSLKYFFDQKELNMR 578
Score = 47.8 bits (112), Expect(3) = 2e-33
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = -2
Query: 349 FV*TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVS 230
FV CE +F ELKKRLTTA +LILP+ DE V+Y D S
Sbjct: 463 FVWDVHCEKSFGELKKRLTTAPVLILPKSDEPFVVYCDAS 502
Score = 37.0 bits (84), Expect(3) = 2e-33
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLAS*PIDQI 367
+ LGLAGYYR+F+E FSKLA P+ Q+
Sbjct: 430 RSLLGLAGYYRRFIEGFSKLAL-PLTQL 456
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 105 bits (263), Expect(3) = 2e-31
Identities = 52/73 (71%), Positives = 60/73 (82%)
Frame = -1
Query: 221 IGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSNHQS 42
+G ++Q V+AYASRQLKIHERNY THDLEL VVFALKI RHY YG FT++S+H+S
Sbjct: 127 LGCVLMQHKKVVAYASRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGCTFTVFSDHKS 186
Query: 41 LKYLFFQKELNMR 3
LKYLF QKELNMR
Sbjct: 187 LKYLFDQKELNMR 199
Score = 42.4 bits (98), Expect(3) = 2e-31
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = -2
Query: 349 FV*TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
F T CE F LK++LTT+ +L+LP+ +E +Y D S GCV
Sbjct: 84 FAWTEKCEENFQLLKRKLTTSPVLVLPQSEEPHEVYCDASHQGLGCV 130
Score = 33.9 bits (76), Expect(3) = 2e-31
Identities = 13/32 (40%), Positives = 24/32 (75%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLAS*PIDQINPEE 355
+ +GLAGYYR+F+E F+K+ + P+ Q+ ++
Sbjct: 51 RSLVGLAGYYRRFIEGFAKIVA-PLTQLTRKD 81
>emb|CAH66289.1| OSIGBa0161P06.6 [Oryza sativa Indica Group]
Length = 1433
Score = 94.0 bits (232), Expect(3) = 6e-31
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY YG +Y++
Sbjct: 848 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLYGNHTEIYTD 907
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 908 HKSLKYIFTQPDLNMR 923
Score = 47.8 bits (112), Expect(3) = 6e-31
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 811 TEDCERSFQELKKRLVTAPVLILPDSRKDFQVYCDASRHGLGCV 854
Score = 38.5 bits (88), Expect(3) = 6e-31
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 775 RSFLGLAGYYRRFIENFSKIA 795
>dbj|BAH80025.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1727
Score = 95.1 bits (235), Expect(3) = 8e-31
Identities = 45/76 (59%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY YG + +Y++
Sbjct: 1094 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLYGNRTEIYTD 1153
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 1154 HKSLKYIFTQPDLNMR 1169
Score = 46.2 bits (108), Expect(3) = 8e-31
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL +A +LILP+ + +Y D S GCV
Sbjct: 1057 TEDCERSFQELKKRLVSAPVLILPDSRKDFQVYCDASRHGLGCV 1100
Score = 38.5 bits (88), Expect(3) = 8e-31
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 1021 RSFLGLAGYYRRFIENFSKIA 1041
>emb|CAH68019.1| H0807C06-H0308C08.6 [Oryza sativa Indica Group]
Length = 1260
Score = 93.2 bits (230), Expect(3) = 1e-30
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 692 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEVYTD 751
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 752 HKSLKYIFTQPDLNMR 767
Score = 47.4 bits (111), Expect(3) = 1e-30
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 655 TEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCV 698
Score = 38.5 bits (88), Expect(3) = 1e-30
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 619 RSFLGLAGYYRRFIENFSKIA 639
>dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1666
Score = 94.4 bits (233), Expect(3) = 2e-30
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL HE NY THDLEL VV ALKI RHY YG + +Y++
Sbjct: 1061 RHGLGCVLMQEGKVVAYASRQLSPHENNYPTHDLELAAVVHALKIWRHYLYGNRTEIYTD 1120
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 1121 HKSLKYIFTQPDLNMR 1136
Score = 45.4 bits (106), Expect(3) = 2e-30
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T CE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 1024 TESCEQSFQELKKRLVTAPVLILPDARKGFQVYCDASRHGLGCV 1067
Score = 38.5 bits (88), Expect(3) = 2e-30
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 988 RSFLGLAGYYRRFIENFSKIA 1008
>ref|XP_007044383.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508708318|gb|EOY00215.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1537
Score = 97.8 bits (242), Expect(3) = 2e-30
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 2/77 (2%)
Frame = -1
Query: 227 NKIGL-CVI-QEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYS 54
+K+GL CV+ Q++ VIAYASRQLK HE NY THDLEL VVFALKI RHY YGE+ ++
Sbjct: 893 SKLGLGCVLMQDEKVIAYASRQLKKHETNYPTHDLELATVVFALKIWRHYLYGERCRIFY 952
Query: 53 NHQSLKYLFFQKELNMR 3
+H+SLKYL QKELN+R
Sbjct: 953 DHKSLKYLLTQKELNLR 969
Score = 44.3 bits (103), Expect(3) = 2e-30
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = -2
Query: 331 CESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
CE+ F ELK RLT+ L+L LP ++ V+Y+D S GCV
Sbjct: 860 CENRFQELKNRLTSTLVLTLPVSGKEFVVYSDASKLGLGCV 900
Score = 36.2 bits (82), Expect(3) = 2e-30
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLAS*PIDQINPEE 355
+ FLGLAGYYR+FV+ FS +A+ P+ ++ +E
Sbjct: 821 RSFLGLAGYYRRFVQGFSLIAA-PLTRLTRKE 851
>emb|CAH67149.1| OSIGBa0122F23.6 [Oryza sativa Indica Group]
Length = 1346
Score = 92.4 bits (228), Expect(3) = 2e-30
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y +
Sbjct: 784 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEVYMD 843
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 844 HKSLKYIFTQPDLNMR 859
Score = 47.4 bits (111), Expect(3) = 2e-30
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 747 TEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCV 790
Score = 38.5 bits (88), Expect(3) = 2e-30
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 711 RSFLGLAGYYRRFIENFSKIA 731
>emb|CAH66013.1| OSIGBa0093M15.3 [Oryza sativa Indica Group]
Length = 1317
Score = 93.6 bits (231), Expect(3) = 2e-30
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 848 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEIYTD 907
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 908 HKSLKYIFTQPDLNMR 923
Score = 47.8 bits (112), Expect(3) = 2e-30
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 811 TEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCV 854
Score = 37.0 bits (84), Expect(3) = 2e-30
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGL GYYR+F+E+FSK+A
Sbjct: 775 RSFLGLVGYYRRFIENFSKIA 795
>ref|XP_007199150.1| hypothetical protein PRUPE_ppa019626mg, partial [Prunus persica]
gi|462394550|gb|EMJ00349.1| hypothetical protein
PRUPE_ppa019626mg, partial [Prunus persica]
Length = 635
Score = 95.1 bits (235), Expect(3) = 2e-30
Identities = 46/73 (63%), Positives = 55/73 (75%)
Frame = -1
Query: 221 IGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSNHQS 42
+G ++Q + V+AYAS QLK HERNY THDLEL +V ALK RHY YGE F LY +H+S
Sbjct: 193 LGCVLMQSNIVVAYASHQLKNHERNYPTHDLELAAIVHALKTWRHYLYGESFELYLDHKS 252
Query: 41 LKYLFFQKELNMR 3
LKYLF QKEL +R
Sbjct: 253 LKYLFAQKELKLR 265
Score = 46.6 bits (109), Expect(3) = 2e-30
Identities = 25/47 (53%), Positives = 30/47 (63%)
Frame = -2
Query: 349 FV*TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
F+ T +CE +F ELK RLTTA ILI+ E D V+YT S GCV
Sbjct: 150 FIWTQECEKSFQELKTRLTTAPILIILERDIWYVVYTYASKQGLGCV 196
Score = 36.6 bits (83), Expect(3) = 2e-30
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3
Query: 444 FLGLAGYYRKFVESFSKLAS 385
FLGLAGYYR+F+E FS++A+
Sbjct: 119 FLGLAGYYRRFIEDFSQIAA 138
>gb|ABB46919.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1778
Score = 91.7 bits (226), Expect(3) = 3e-30
Identities = 44/76 (57%), Positives = 57/76 (75%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 1145 RHGLGCVLMQEGKVVAYASRQLCPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEIYTD 1204
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 1205 HKSLKYIFTQPDLNMR 1220
Score = 47.8 bits (112), Expect(3) = 3e-30
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 1108 TEDCEQSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCV 1151
Score = 38.5 bits (88), Expect(3) = 3e-30
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 1072 RSFLGLAGYYRRFIENFSKIA 1092
>gb|AAM01161.2|AC113336_13 Putative retroelement [Oryza sativa Japonica Group]
gi|78707943|gb|ABB46918.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1661
Score = 93.6 bits (231), Expect(3) = 3e-30
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 1160 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEIYTD 1219
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 1220 HKSLKYIFTQPDLNMR 1235
Score = 45.4 bits (106), Expect(3) = 3e-30
Identities = 22/44 (50%), Positives = 27/44 (61%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKK L TA +LILP+ + +Y D S GCV
Sbjct: 1123 TEDCEQSFQELKKMLVTAPVLILPDSRKGFQVYCDASRHGLGCV 1166
Score = 38.9 bits (89), Expect(3) = 3e-30
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+FVE+FSK+A
Sbjct: 1087 RSFLGLAGYYRRFVENFSKIA 1107
>emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group]
Length = 1481
Score = 93.2 bits (230), Expect(3) = 7e-30
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 848 RHGLGCMLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEVYTD 907
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 908 HKSLKYIFTQPDLNMR 923
Score = 46.2 bits (108), Expect(3) = 7e-30
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GC+
Sbjct: 811 TEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCM 854
Score = 37.4 bits (85), Expect(3) = 7e-30
Identities = 14/21 (66%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FS++A
Sbjct: 775 RSFLGLAGYYRRFIENFSRIA 795
>emb|CAE02906.1| OSJNBb0045P24.14 [Oryza sativa Japonica Group]
Length = 1195
Score = 93.6 bits (231), Expect(3) = 7e-30
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 788 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEIYTD 847
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 848 HKSLKYIFTQPDLNMR 863
Score = 44.7 bits (104), Expect(3) = 7e-30
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T CE +F ELKKRL TA +L+LP+ + +Y D S GCV
Sbjct: 751 TEGCEQSFQELKKRLVTAPVLVLPDSRKGFQVYCDASRHGLGCV 794
Score = 38.5 bits (88), Expect(3) = 7e-30
Identities = 15/21 (71%), Positives = 20/21 (95%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYYR+F+E+FSK+A
Sbjct: 715 RSFLGLAGYYRRFIENFSKIA 735
>ref|XP_007049449.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508701710|gb|EOX93606.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 920
Score = 100 bits (248), Expect(3) = 9e-30
Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Frame = -1
Query: 227 NKIGL-CVI-QEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYS 54
+K+GL CV+ Q++ VIAYASRQLK HE NY THDLEL VVFALKI RHY YGE+ ++S
Sbjct: 639 SKLGLGCVLMQDEKVIAYASRQLKKHETNYPTHDLELAAVVFALKIWRHYLYGERCRIFS 698
Query: 53 NHQSLKYLFFQKELNMR 3
+H+SLKYL QKELN+R
Sbjct: 699 DHKSLKYLLTQKELNLR 715
Score = 43.5 bits (101), Expect(3) = 9e-30
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = -2
Query: 331 CESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
CE+ F ELK RLT+A IL LP ++ V+Y+D S GCV
Sbjct: 606 CENRFQELKNRLTSAPILTLPVSGKEFVVYSDTSKLGLGCV 646
Score = 32.7 bits (73), Expect(3) = 9e-30
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLAS 385
+ FLGLAGYYR+FV+ F +A+
Sbjct: 567 RSFLGLAGYYRRFVQGFFLIAA 588
>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 95.5 bits (236), Expect(3) = 1e-29
Identities = 44/73 (60%), Positives = 57/73 (78%)
Frame = -1
Query: 221 IGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSNHQS 42
+G ++QE V+AY+SRQLK+HE+NY HDLEL VV ALK RHY YG+K +Y++H+S
Sbjct: 982 LGCVLMQEGRVVAYSSRQLKVHEKNYPIHDLELAAVVHALKTWRHYLYGQKCDVYTDHKS 1041
Query: 41 LKYLFFQKELNMR 3
LKY+F Q ELNMR
Sbjct: 1042 LKYIFTQSELNMR 1054
Score = 42.0 bits (97), Expect(3) = 1e-29
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T C+ AF LK++LTTA +L+LP+ + +Y D T GCV
Sbjct: 942 TQKCQEAFEALKEKLTTAPVLVLPDVHKPFSVYCDACYTGLGCV 985
Score = 38.5 bits (88), Expect(3) = 1e-29
Identities = 20/31 (64%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = -3
Query: 477 AKTDHYARGQK-FLGLAGYYRKFVESFSKLA 388
A TD ARG K F+G+AGYYR+F+E FSK+A
Sbjct: 898 APTD--ARGIKSFIGMAGYYRRFIEGFSKIA 926
>emb|CAH66097.1| OSIGBa0114I04.4 [Oryza sativa Indica Group]
Length = 1455
Score = 93.6 bits (231), Expect(3) = 1e-29
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 850 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEIYTD 909
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 910 HKSLKYIFTQPDLNMR 925
Score = 47.0 bits (110), Expect(3) = 1e-29
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 813 TEDCERSFQELKKRLVTAPVLILPDRRKGFQVYCDASRHGLGCV 856
Score = 35.4 bits (80), Expect(3) = 1e-29
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLAGYY +F+E+FSK+A
Sbjct: 777 RSFLGLAGYYCRFIENFSKIA 797
>gb|ABA97773.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 930
Score = 93.2 bits (230), Expect(3) = 1e-29
Identities = 44/76 (57%), Positives = 58/76 (76%)
Frame = -1
Query: 230 RNKIGLCVIQEDGVIAYASRQLKIHERNYLTHDLELVVVVFALKI*RHYRYGEKFTLYSN 51
R+ +G ++QE V+AYASRQL+ HE NY THDLEL VV ALKI RHY +G + +Y++
Sbjct: 297 RHGLGCVLMQEGKVVAYASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEVYTD 356
Query: 50 HQSLKYLFFQKELNMR 3
H+SLKY+F Q +LNMR
Sbjct: 357 HKSLKYIFTQPDLNMR 372
Score = 47.4 bits (111), Expect(3) = 1e-29
Identities = 23/44 (52%), Positives = 28/44 (63%)
Frame = -2
Query: 340 TNDCESAFLELKKRLTTALILILPEPDEKLVIYTDVSGTRSGCV 209
T DCE +F ELKKRL TA +LILP+ + +Y D S GCV
Sbjct: 260 TEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCV 303
Score = 35.4 bits (80), Expect(3) = 1e-29
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = -3
Query: 450 QKFLGLAGYYRKFVESFSKLA 388
+ FLGLA YYR+F+E+FSK+A
Sbjct: 224 RSFLGLAWYYRRFIENFSKIA 244