BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00013170
         (1142 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACN32036.1| unknown [Zea mays]                                     123   5e-41
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   135   1e-40
gb|ACL54615.1| unknown [Zea mays]                                     122   1e-40
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   123   1e-36
gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subc...   117   5e-36
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                115   1e-35
ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group] g...   117   3e-35
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762...   119   9e-35
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   106   3e-34
ref|XP_004958843.1| PREDICTED: uncharacterized protein LOC101772...   117   5e-34
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   107   1e-33
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     113   2e-33
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   109   2e-33
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   105   3e-33
ref|XP_004980642.1| PREDICTED: uncharacterized protein LOC101772...   114   4e-33
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   107   3e-32
gb|AAU90262.1| integrase core domain containing protein [Oryza s...   110   5e-32
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  100   7e-32
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho...   108   3e-31
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc...   108   3e-31

>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  123 bits (309), Expect(2) = 5e-41
 Identities = 81/248 (32%), Positives = 122/248 (49%), Gaps = 11/248 (4%)
 Frame = +2

Query: 185 SGVLTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITV--RDNSGNTTTETN 358
           S +++ KL   N+LL  + VL  +R   L G++ G+ P P QT+ V   + SG  T   N
Sbjct: 23  SQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSGGRTIAIN 82

Query: 359 PAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGE 538
           P +  W  QDQ           E + + V+  TT+   W+T+   +   SR+  +Q++ +
Sbjct: 83  PEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRARIMQIRMQ 142

Query: 539 LYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRA 718
           L  + KG +T A YF K+K + D L   G  ++D  FIS LL GL  +YD + T IT+R 
Sbjct: 143 LATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSLVTSITTRP 202

Query: 719 CEITIEKVFSLLLRQENELKHYNTMSQVSFSANLATRKP---------NNNYGRGNSQAH 871
              TI  V++ LL  E   +++  + Q+S S N A R P         N   GRG     
Sbjct: 203 DTYTISDVYAHLLSFETRQEYHTAVGQIS-SVNNANRVPSRGGGAFGQNGRGGRGRGGRS 261

Query: 872 YRSRGHCR 895
              RG+ R
Sbjct: 262 QPGRGNNR 269



 Score = 72.8 bits (177), Expect(2) = 5e-41
 Identities = 34/78 (43%), Positives = 46/78 (58%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            S   CQIC K NH+A  CW+ FDQ Y+            K A  A+ +   DP+WY+DSG
Sbjct: 281  SSGTCQICGKGNHNALQCWHRFDQAYQAESTV-------KQAAAATHEYAVDPNWYMDSG 333

Query: 1084 ATNHITTDMENLSLKSEY 1137
            AT+HIT+D+E L+ +  Y
Sbjct: 334  ATDHITSDLERLTTRERY 351


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  135 bits (340), Expect(2) = 1e-40
 Identities = 81/237 (34%), Positives = 125/237 (52%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTETNPAYDYWVQ 382
           KLT+ N+LL K+ VL A+R  +LD  L G +  PP+TI+  D S  T T  NPAY  W+ 
Sbjct: 23  KLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTIS--DASDRTVTVANPAYGRWIA 80

Query: 383 QDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTKGS 562
           +DQ             + S V+  +TS  +W T+   +  +SR+  V  +  L    KG+
Sbjct: 81  RDQAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGA 140

Query: 563 MTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIEKV 742
            ++A YF+K++G  D L  AG  +DD  F+S LL GL+++++ + T + +R+  IT   +
Sbjct: 141 SSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDL 200

Query: 743 FSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGGPNK 913
           ++ LL  EN + H  T S     ++   R P      G S     SRG  RG GP++
Sbjct: 201 YTQLLSYENRM-HLQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSR 256



 Score = 59.7 bits (143), Expect(2) = 1e-40
 Identities = 26/78 (33%), Positives = 45/78 (57%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            S+  CQ+C +  H+A +CWY FD+ Y             ++A  A+  + ++  WY D+G
Sbjct: 278  SRPRCQVCSRVGHTALNCWYRFDENY---------VPDQRSANSAAHQNGSNVPWYTDTG 328

Query: 1084 ATNHITTDMENLSLKSEY 1137
            AT+HIT D++ L++  +Y
Sbjct: 329  ATDHITGDLDRLTMHDKY 346


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  122 bits (306), Expect(2) = 1e-40
 Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 11/248 (4%)
 Frame = +2

Query: 185 SGVLTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITV--RDNSGNTTTETN 358
           S +++ KL   N+LL  + VL  +R   L G++ G+ P P QT+ V   + SG  T   N
Sbjct: 23  SQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGSGGRTIAIN 82

Query: 359 PAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGE 538
           P +  W  QDQ           E + + V+  TT+   W+T+   +   SR   +Q++ +
Sbjct: 83  PEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRVRIMQIRMQ 142

Query: 539 LYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRA 718
           L  + KG +T A YF K+K + D L   G  ++D  FIS LL GL  +YD + T IT+R 
Sbjct: 143 LATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSLVTSITTRP 202

Query: 719 CEITIEKVFSLLLRQENELKHYNTMSQVSFSANLATRKP---------NNNYGRGNSQAH 871
              TI  V++ LL  E   +++  + Q+S S N A R P         N   GRG     
Sbjct: 203 DTYTISDVYAHLLSFETRQEYHTAVGQIS-SVNNANRVPSRGGGAFGQNGRGGRGRGGRS 261

Query: 872 YRSRGHCR 895
              RG+ R
Sbjct: 262 QPGRGNNR 269



 Score = 72.8 bits (177), Expect(2) = 1e-40
 Identities = 34/78 (43%), Positives = 46/78 (58%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            S   CQIC K NH+A  CW+ FDQ Y+            K A  A+ +   DP+WY+DSG
Sbjct: 281  SSGTCQICGKGNHNALQCWHRFDQAYQAESTV-------KQAAAATHEYAVDPNWYMDSG 333

Query: 1084 ATNHITTDMENLSLKSEY 1137
            AT+HIT+D+E L+ +  Y
Sbjct: 334  ATDHITSDLERLTTRERY 351


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score =  123 bits (308), Expect(2) = 1e-36
 Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 4/243 (1%)
 Frame = +2

Query: 173 SSSNSGV-LTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTT 349
           S S  G+ +T KL++ N+L+ K  VLA +RG RLD YL G   +P  TI ++ N      
Sbjct: 10  SGSLGGITVTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEV 69

Query: 350 ETNPAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQL 529
            +NPA D W+  DQ             + SQV   +++  LW+TI   F   +R+  +  
Sbjct: 70  -SNPAVDEWIANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINT 128

Query: 530 KGELYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLIT 709
           K  L    KG + IA Y SK++ + D L  +G  VD+   IS ++ GL+++++ I + + 
Sbjct: 129 KIALTNTKKGDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLV 188

Query: 710 SRACEITIEKVFSLLLRQENELKHYNTMSQVSFSANLATR---KPNNNYGRGNSQAHYRS 880
           S++  +++ + +S LL  E  +K      +   SANLA R   + N   GR N Q   + 
Sbjct: 189 SKSEHVSLGEAYSQLLSFEQRMK-----MRQEHSANLANRGRGRGNPGRGRNNKQPQQQQ 243

Query: 881 RGH 889
           RGH
Sbjct: 244 RGH 246



 Score = 58.2 bits (139), Expect(2) = 1e-36
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +1

Query: 916  CQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGATNH 1095
            CQ+C K  H+  DCWY +D+++              A   AS     D +WYVD+G T+H
Sbjct: 274  CQLCYKRGHTVIDCWYRYDEDFVPDEKY--------AGTTASYG--VDSNWYVDTGTTDH 323

Query: 1096 ITTDMENLSLKSEYK 1140
            +T ++E L+++ +YK
Sbjct: 324  VTGELEKLTIRDKYK 338


>gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 339

 Score =  117 bits (294), Expect(2) = 5e-36
 Identities = 80/245 (32%), Positives = 117/245 (47%), Gaps = 8/245 (3%)
 Frame = +2

Query: 194 LTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTETNPAYDY 373
           +T KLTR N++L ++ VL A+RG  L  YL  T   P +T T  D +       N  Y  
Sbjct: 18  VTVKLTRENYVLWRAQVLPALRGALLTNYLDSTAEEPAKTRTTVDKNDKEIVSNNSEYAM 77

Query: 374 WVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVT 553
           W+ QDQ           + +  QV    TS E+W  I + +   SR+    L+  L    
Sbjct: 78  WMAQDQQVLAYLLNSLSKDVLQQVATLNTSAEVWAAITNMYTSQSRARITNLRISLTNSK 137

Query: 554 KGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITI 733
           KGS T A YFSK+KG+ D+L  AG  +DD   +S +L GL+ +Y+ +             
Sbjct: 138 KGSTTTAAYFSKMKGLADDLASAGKPIDDDELVSYILAGLDIDYNPL------------- 184

Query: 734 EKVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGH--C----- 892
             V ++++  +N + H     Q+  SAN A R      GRGN+  ++R RG+  C     
Sbjct: 185 --VSTVMVSYDNRMDHLQGGGQIQSSANAAFR------GRGNNNNNFRGRGNGGCGRGNG 236

Query: 893 -RGGG 904
            RGGG
Sbjct: 237 GRGGG 241



 Score = 61.6 bits (148), Expect(2) = 5e-36
 Identities = 28/77 (36%), Positives = 42/77 (54%)
 Frame = +1

Query: 907  KQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGA 1086
            + +CQ+C K  H+   CWY FDQ Y+             AA   +     D +WYVD GA
Sbjct: 246  RPVCQLCGKTGHTVIKCWYRFDQTYQPEEKV--------AAAATNSAYGVDTNWYVDCGA 297

Query: 1087 TNHITTDMENLSLKSEY 1137
            T+HIT +++ LS++ +Y
Sbjct: 298  TDHITGELDKLSIREKY 314


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  115 bits (289), Expect(2) = 1e-35
 Identities = 82/260 (31%), Positives = 125/260 (48%), Gaps = 2/260 (0%)
 Frame = +2

Query: 131 QTTNQLIMKNMLPFSSSNSGV-LTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPP 307
           ++T      N    S+   GV +T KL++ N  L  + VL A+RG RL+G++ G  P PP
Sbjct: 134 KSTQMASTSNSAASSNPLIGVQVTEKLSKANHGLWVAQVLTAIRGARLEGHINGKNPAPP 193

Query: 308 QTITVRDNSGNTTTETNPAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTII 487
             IT +   G     +NP YD W   DQ                QV    T+ E W T+ 
Sbjct: 194 AEIT-KTVDGKEVKTSNPNYDEWFAADQQILGFLFSSLTRETLLQVAAVKTAAEAWKTLD 252

Query: 488 HNFGMYSRSCHVQLKGELYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLH 667
             F   +R+  + ++  L  + KG+ +I+ Y  K+K + D +  AG  +DD   I+ +L+
Sbjct: 253 DMFTSRTRARSLNVRLALTTLQKGNSSISEYIGKMKTLADEVAAAGKPLDDEELIAYILN 312

Query: 668 GLNQEYDVISTLITSRACEITIEKVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNY 847
           GL++++D + + I  R   +T+ +V+S LL  EN L     M Q   +AN+A R      
Sbjct: 313 GLDEDFDSVVSTIVGRVEPVTVAEVYSQLLSFENRL----AMRQAQATANMANRGGRGGG 368

Query: 848 G-RGNSQAHYRSRGHCRGGG 904
           G RG      R RG  RG G
Sbjct: 369 GSRGGGANPGRGRGATRGRG 388



 Score = 62.4 bits (150), Expect(2) = 1e-35
 Identities = 28/79 (35%), Positives = 44/79 (55%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            ++ +CQ+C K  H A DCW+ FD+++             K    A      D +WYVD+G
Sbjct: 406  NRPLCQVCYKRGHVAADCWHRFDEDF---------VPDDKLVAAAIHTHARDSNWYVDTG 456

Query: 1084 ATNHITTDMENLSLKSEYK 1140
            AT+HIT+++E L+ +  YK
Sbjct: 457  ATDHITSELEKLTARDVYK 475


>ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group]
           gi|113531414|dbj|BAF03797.1| Os01g0123000 [Oryza sativa
           Japonica Group] gi|215741345|dbj|BAG97840.1| unnamed
           protein product [Oryza sativa Japonica Group]
          Length = 360

 Score =  117 bits (292), Expect(2) = 3e-35
 Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 4/238 (1%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTET----NPAYD 370
           KLT+ N+ L  + VL A+RG RL+G++ G    PP  I  ++       +T    NPA D
Sbjct: 22  KLTKQNYALWSAQVLTALRGARLEGFISGKTTPPPAEIEKKEGDKKEGEKTIKIANPAVD 81

Query: 371 YWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYV 550
            W   DQ             I SQV G TT+ + W  I   F   SR+  + ++  L   
Sbjct: 82  EWFATDQQVLGFLFSSLSREILSQVAGATTAAQAWQAISDMFASKSRAGLINMRLALTST 141

Query: 551 TKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEIT 730
            KG+M++  Y +K++ I D L  AG  +D    I+ +++GL+  +D +   + +R   IT
Sbjct: 142 QKGTMSVTEYVAKMRAIADELAAAGKPIDQDDLIAYIINGLDANFDPVVEALVARVEPIT 201

Query: 731 IEKVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGG 904
           +++++S LL  EN+++       ++ S N A R   NN  RG      R RG   GGG
Sbjct: 202 VQEMYSHLLNFENKIRLRQAF--LTASTNAANR---NNVTRGGRGGMPRGRGGRGGGG 254



 Score = 60.1 bits (144), Expect(2) = 3e-35
 Identities = 28/79 (35%), Positives = 43/79 (54%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            ++  CQ+C K  H A DCW+ FD+ Y             K    A+     D +WYVD+G
Sbjct: 271  NRPTCQVCNKRGHVASDCWHRFDETY---------VPDEKIGGAATHAYGIDTNWYVDTG 321

Query: 1084 ATNHITTDMENLSLKSEYK 1140
            AT+HIT+ ++ L+ K +Y+
Sbjct: 322  ATDHITSQLDKLTTKEKYQ 340


>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
          Length = 866

 Score =  119 bits (297), Expect(2) = 9e-35
 Identities = 78/234 (33%), Positives = 120/234 (51%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTETNPAYDYWVQ 382
           KLTRNNF+L K   L AVRG +  G L GT   PPQ I   +  G      NP +D WV+
Sbjct: 21  KLTRNNFVLWKIQFLPAVRGAKALGILEGTTAEPPQEIEA-EVDGKKKKIPNPEHDSWVE 79

Query: 383 QDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTKGS 562
           +DQ           + + + +   TTS + W  +   F   SR+    L+ +L    KGS
Sbjct: 80  RDQQLLSYLVNSVSKEVLAGITTATTSAQAWKALGAMFAAQSRARVTNLRMQLATAKKGS 139

Query: 563 MTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIEKV 742
           +T A YF+K++ I D L  AG  ++D   ++ +L+GL+ +Y    + +  R+ ++++ ++
Sbjct: 140 LTTAEYFNKMQNIKDELASAGVTINDDEVVAHILNGLDFDYHPFVSSMMGRSGDLSLSEL 199

Query: 743 FSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGG 904
           +SLL+  +  L+ Y    Q   SAN+A+R   N   RG S       G  RGGG
Sbjct: 200 YSLLMEYDLRLEMYQGTEQHQSSANIASRGREN---RGRS-------GGRRGGG 243



 Score = 56.2 bits (134), Expect(2) = 9e-35
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +1

Query: 916  CQICKKPNHSAWDCWYYF--DQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGAT 1089
            CQICKK NH A  C++ +  D++Y+                        D +WY DSGAT
Sbjct: 276  CQICKKTNHEAKQCYFRYEEDEQYRGRPNEAYG---------------VDTNWYADSGAT 320

Query: 1090 NHITTDMENLSLKSEY 1137
            NH+T ++E LS++  Y
Sbjct: 321  NHVTGELEKLSVRDRY 336


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1145

 Score =  106 bits (264), Expect(2) = 3e-34
 Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 8/242 (3%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTETNPAYDYWVQ 382
           KL +NN+ L K  + AAVRG RL G+L G   +P   +TV  + G +T + NPA++ W  
Sbjct: 23  KLGKNNYALWKVQICAAVRGARLQGHLTGASEKPEAEVTVTAD-GKSTKKANPAFEDWEA 81

Query: 383 QDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTKGS 562
            DQ             +  QV    T+ E+W TI   + M++R+  +  +  L    KG+
Sbjct: 82  LDQQVLGYLLSSLSRDVLMQVAACETAAEVWATIERMYSMHTRARTMNTRFALTNTKKGN 141

Query: 563 MTIA*YFSKLKGIVDNL-VDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIEK 739
           MT+  +F K+K + D +    G  VD+   I  ++ GL + Y  + +++ +R   +T+  
Sbjct: 142 MTLPEFFGKMKALGDEMAASTGRPVDEEEMIQHIIAGLGEGYSKVISVVCARPEPMTVSD 201

Query: 740 VFSLLLRQENELKHYNTMSQVSFSANLATRKP--NNNYGRG-----NSQAHYRSRGHCRG 898
           ++S ++  E  +  Y    +     NLA R    NN  GRG      S    R RG   G
Sbjct: 202 LYSQVVNFEGRMALYRGTQE--GVVNLANRSSGGNNGGGRGGYTNRGSGGAPRGRGRGNG 259

Query: 899 GG 904
           GG
Sbjct: 260 GG 261



 Score = 67.0 bits (162), Expect(2) = 3e-34
 Identities = 31/77 (40%), Positives = 44/77 (57%)
 Frame = +1

Query: 907  KQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGA 1086
            K  CQ+C K  H+A DCWY +D++Y              AA  AS     D +WY+D+GA
Sbjct: 274  KPTCQVCFKRGHTATDCWYRYDEDYVPDDKHV-------AAATASSSYGVDTNWYIDTGA 326

Query: 1087 TNHITTDMENLSLKSEY 1137
            T+HIT ++E L+ K +Y
Sbjct: 327  TDHITGELEKLTTKDKY 343


>ref|XP_004958843.1| PREDICTED: uncharacterized protein LOC101772504 [Setaria italica]
          Length = 515

 Score =  117 bits (294), Expect(2) = 5e-34
 Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 2/239 (0%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGT--KPRPPQTITVRDNSGNTTTETNPAYDYW 376
           KLTR+NF+L K+  L AVRG ++ G L GT  +PRP   +   D  G      NP +D W
Sbjct: 20  KLTRDNFVLWKAQFLPAVRGAKVLGILDGTISEPRP---VIEADVDGKKKQIPNPEHDSW 76

Query: 377 VQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTK 556
           V++DQ           + + + +   TTS E W  +   F   SR+    L+ +L    K
Sbjct: 77  VEKDQQLLSYLVNSVSKEVLAGIATATTSAEAWKALGVMFAAQSRARVTNLRMQLATAKK 136

Query: 557 GSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIE 736
           GS+T A YF+K++ I D L  AG  V+D   ++ +L+GL+ +Y    + +  R+ ++++ 
Sbjct: 137 GSLTTAAYFNKMQNIKDELASAGVTVNDDEVVAHILNGLDFDYHPFVSSMMGRSGDLSLS 196

Query: 737 KVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGGPNK 913
           +++SLL+  +  L+ Y    Q   SAN+A+R      GRGN     RS G   GG  N+
Sbjct: 197 ELYSLLMEYDLRLEMYQGTEQHQSSANVASR------GRGN---RGRSGGRHSGGRSNR 246



 Score = 55.1 bits (131), Expect(2) = 5e-34
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +1

Query: 907  KQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGA 1086
            K  CQICKK NH A  C++ +D++ +                        D +WY DSGA
Sbjct: 271  KTPCQICKKTNHEAKQCYFRYDEDEQYRGRPSEAYG-------------VDTNWYADSGA 317

Query: 1087 TNHITTDMENLSLKSEY 1137
            TNH+T ++E L+++  Y
Sbjct: 318  TNHVTGELEKLTVRDCY 334


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1621

 Score =  107 bits (266), Expect(2) = 1e-33
 Identities = 78/267 (29%), Positives = 129/267 (48%), Gaps = 9/267 (3%)
 Frame = +2

Query: 131 QTTNQLIMKNMLPFSSSNSGV--------LTFKLTRNNFLL*KSLVLAAVRGHRLDGYLF 286
           ++ +Q   +++L  SSS++          ++ KL + N  L K  V AAVRG RL G+L 
Sbjct: 75  ESVDQFPKRSILMASSSSTAATNPFQGHPISEKLGKANHALWKVQVSAAVRGARLQGHLT 134

Query: 287 GTKPRPPQTITVRDNSGNTTTETNPAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSY 466
           G   RPP  I V  + G T  E NPA++ W   DQ             +  QV    T+ 
Sbjct: 135 GATKRPPAEIAVTKD-GATKKEPNPAHEDWEATDQQVLGYLLSSLTREVLMQVATCDTAA 193

Query: 467 ELWNTIIHNFGMYSRSCHVQLKGELYYVTKGSMTIA*YFSKLKGIVDNLVDAGSL-VDDI 643
           E+W+ I   +  ++R+  +  +  L    KG+M+   YF+K+K + D +  AG   +D+ 
Sbjct: 194 EVWSAIEQMYSTHTRARAINTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEE 253

Query: 644 TFISCLLHGLNQEYDVISTLITSRACEITIEKVFSLLLRQENELKHYNTMSQVSFSANLA 823
             I  ++ GL + Y  + + + +R   I++  ++S +L  E     Y    +V  + N+A
Sbjct: 254 ELIQYIITGLGEGYSEVVSAVCARVEPISVSDLYSQVLNFEARQAIYRGAQEV--TVNVA 311

Query: 824 TRKPNNNYGRGNSQAHYRSRGHCRGGG 904
            R   ++ GRGNS      +G  RGGG
Sbjct: 312 NRGGFSHGGRGNSNG---GQGGSRGGG 335



 Score = 64.7 bits (156), Expect(2) = 1e-33
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +1

Query: 907  KQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSV-ADPSWYVDSG 1083
            + ICQ+C K  H+A DCWY +D++Y             K    A+++S   D +WY+D+G
Sbjct: 360  RPICQVCFKRGHTAADCWYRYDEDY---------VPDAKHVAAAAVNSYGVDTNWYIDTG 410

Query: 1084 ATNHITTDMENLSLKSEY 1137
            AT+H+T +++ L++K +Y
Sbjct: 411  ATDHVTGELDKLTMKEKY 428


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  113 bits (283), Expect(2) = 2e-33
 Identities = 78/238 (32%), Positives = 116/238 (48%), Gaps = 4/238 (1%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTE--TNPAYDYW 376
           KLT+NNF L K+ +L  + G R++GYL G    P   I V++      T+  +NPAY+ W
Sbjct: 20  KLTKNNFSLWKTHILPVICGARMEGYLTGATQVPSAEIEVKEGEKGEITKKVSNPAYEAW 79

Query: 377 VQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTK 556
           +  DQ           + I  QV    T+   W  I+      SR+  +  +  L    K
Sbjct: 80  IAADQQVLGFLLSSISKEILIQVANVDTAAHAWKMIVGLLSTQSRARALNTRIALATTQK 139

Query: 557 GSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIE 736
           G  +++ Y SK+K + D +  AG  +DD  F S +L GL+ +Y+ + + I  R+  +TI 
Sbjct: 140 GESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDYEQVVSSIVGRSEGVTIS 199

Query: 737 KVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGR--GNSQAHYRSRGHCRGGG 904
           +V+S LL  E EL   N  S    S N A    NN  G    N   ++ +RG  RGGG
Sbjct: 200 EVYSQLLSFE-ELWQTNGSSGSYSSVNSANHGRNNGGGGNFNNGGGYFSNRG--RGGG 254



 Score = 57.0 bits (136), Expect(2) = 2e-33
 Identities = 25/80 (31%), Positives = 40/80 (50%)
 Frame = +1

Query: 898  WRSKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVD 1077
            ++ +  CQ+C K  H   DCW+ +D  +              A   A+     D +WYVD
Sbjct: 270  FKPRPTCQLCSKVGHVVADCWHCYDDSF-----------VPDARVAAAASYGVDSNWYVD 318

Query: 1078 SGATNHITTDMENLSLKSEY 1137
            +GAT+HIT ++E L+ +  Y
Sbjct: 319  TGATDHITNELEKLTTRDRY 338


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1180

 Score =  109 bits (272), Expect(2) = 2e-33
 Identities = 74/252 (29%), Positives = 121/252 (48%), Gaps = 4/252 (1%)
 Frame = +2

Query: 167 PFSSSNSGV-LTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNT 343
           P   S  G+ +T KL + N+L+ K  VLA +RG RLDGYL G   R P   T+   S   
Sbjct: 8   PAVGSLGGITVTEKLGKGNYLIWKVQVLAVIRGARLDGYLTGAI-RAPSPTTIIKKSDKD 66

Query: 344 TTETNPAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHV 523
               NPA+D W+  DQ             + S+V    ++  LW+ +   F   +R+  +
Sbjct: 67  VEVPNPAFDEWIANDQQVLGYLLTTMSRDVLSKVATCGSAAALWSVVEGMFSSATRARSI 126

Query: 524 QLKGELYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTL 703
             K  L    KG +++A Y  K++ + D L  +  LVD+   IS ++ GL+++++ I + 
Sbjct: 127 NTKITLTNTKKGDLSVAEYVGKIRALADELATSDKLVDEEDLISFIIVGLDEDFEPIISS 186

Query: 704 ITSRACEITIEKVFSLLLRQENELKHYNTMSQVSFSANLATR---KPNNNYGRGNSQAHY 874
           + S++  +++ + +S LL  E  +K      +   SANLA R   +     GRG      
Sbjct: 187 LVSKSEHVSLGEAYSQLLSFEQRMK-----LRQEHSANLAHRGRGRGQQQQGRGCGNQGN 241

Query: 875 RSRGHCRGGGPN 910
           + +  C  GG N
Sbjct: 242 QQQQQCGRGGKN 253



 Score = 61.2 bits (147), Expect(2) = 2e-33
 Identities = 29/75 (38%), Positives = 45/75 (60%)
 Frame = +1

Query: 916  CQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGATNH 1095
            CQ+C K  H+  DCWY +D+++             K A  A+   V D +WYVD+GAT+H
Sbjct: 277  CQLCYKRGHTVIDCWYRYDEDF---------VPDEKYAGTAASYGV-DSNWYVDTGATDH 326

Query: 1096 ITTDMENLSLKSEYK 1140
            IT ++E L+++ +YK
Sbjct: 327  ITGELEKLTIRDKYK 341


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score =  105 bits (262), Expect(2) = 3e-33
 Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 1/235 (0%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGNTTTETNPAYDYWVQ 382
           KL + N  L K  V AAVRG RL G+L G   RPP  I V  + G T  E NPA++ W  
Sbjct: 21  KLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEIAVTKD-GATKKEPNPAHEDWEA 79

Query: 383 QDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTKGS 562
            DQ             +  QV    T+ E+W+ I   +  ++R+  +  +  L    KG+
Sbjct: 80  TDQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYSTHTRARAINTRFALTNTKKGN 139

Query: 563 MTIA*YFSKLKGIVDNLVDAGSL-VDDITFISCLLHGLNQEYDVISTLITSRACEITIEK 739
           M+   YF+K+K + D +  AG   +D+   I  ++ GL + Y  + + + +R   I++  
Sbjct: 140 MSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVVSAVCARVEPISVSD 199

Query: 740 VFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGG 904
           ++S +L  E     Y    +V  + N+A R   ++ GRGNS      +G  RGGG
Sbjct: 200 LYSQVLNFEARQAIYRGAQEV--TVNVANRGGFSHGGRGNSNG---GQGGSRGGG 249



 Score = 64.7 bits (156), Expect(2) = 3e-33
 Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +1

Query: 907  KQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSV-ADPSWYVDSG 1083
            + ICQ+C K  H+A DCWY +D++Y             K    A+++S   D +WY+D+G
Sbjct: 275  RPICQVCFKRGHTAADCWYRYDEDY---------VPDAKHVAAAAVNSYGVDTNWYIDTG 325

Query: 1084 ATNHITTDMENLSLKSEY 1137
            AT+H+T +++ L++K +Y
Sbjct: 326  ATDHVTGELDKLTMKEKY 343


>ref|XP_004980642.1| PREDICTED: uncharacterized protein LOC101772525 [Setaria italica]
          Length = 469

 Score =  114 bits (286), Expect(2) = 4e-33
 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 2/239 (0%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGT--KPRPPQTITVRDNSGNTTTETNPAYDYW 376
           KLTR+NF+L K+  L AVRG ++ G L GT  +PRP   +   D         NP +D W
Sbjct: 20  KLTRDNFVLWKAQFLPAVRGAKVLGILDGTISEPRP---VIEADVDSKKKQIPNPEHDSW 76

Query: 377 VQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTK 556
           V++DQ           + + + +   TTS E W  +   F   SR+    L+ +L    K
Sbjct: 77  VEKDQQLLSYLVNSVSKEVLAGIATATTSAEAWKALGVMFAAQSRARVTNLRMQLATAKK 136

Query: 557 GSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIE 736
           GS+T A YF+K++ I D L  AG  V D   ++ +L+GL+ +Y    + +  R+ ++++ 
Sbjct: 137 GSLTTAAYFNKMQNIKDELASAGVTVHDDEVVAHILNGLDFDYHPFVSSMMGRSGDLSLS 196

Query: 737 KVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGGPNK 913
           +++SLL+  +  L+ Y    Q   SAN+A+R      GRGN     RS G   GG  N+
Sbjct: 197 ELYSLLMEYDLRLEMYQGTEQHQSSANVASR------GRGN---RGRSGGRHSGGRSNR 246



 Score = 55.1 bits (131), Expect(2) = 4e-33
 Identities = 26/77 (33%), Positives = 39/77 (50%)
 Frame = +1

Query: 907  KQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGA 1086
            K  CQICKK NH A  C++ +D++ +                        D +WY DSGA
Sbjct: 271  KTPCQICKKTNHEAKQCYFRYDEDEQYRGRPSEAYG-------------VDTNWYADSGA 317

Query: 1087 TNHITTDMENLSLKSEY 1137
            TNH+T ++E L+++  Y
Sbjct: 318  TNHVTGELEKLTVRDCY 334


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108706314|gb|ABF94109.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1247

 Score =  107 bits (268), Expect(2) = 3e-32
 Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 5/241 (2%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVR-DNSGNTTTET-NPAYDYW 376
           KL +NN+ L K+ VLA+VRG RL+G+L GT   P  TI+V  +  G+  T   NPAYD W
Sbjct: 15  KLAKNNYALWKAQVLASVRGARLEGHLTGTTAAPAITISVPGEKEGDKATRVANPAYDEW 74

Query: 377 VQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTK 556
           V  DQ             + +QV    T+   W+ +   +   +R+  +  +  L    K
Sbjct: 75  VATDQQILGLLLSTLSRDVLAQVATCGTAATAWSMLEEMYTSMTRARFINTRIALSNTKK 134

Query: 557 GSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIE 736
           G ++I  Y +K++ + D++  AG +VD+   IS ++ GL+  Y+ + + I  ++  ++  
Sbjct: 135 GDLSITEYVAKMRALGDDMTAAGKVVDNEDLISYIIAGLDDTYEPVISSIVGKSEPMSFG 194

Query: 737 KVFSLLL--RQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAH-YRSRGHCRGGGP 907
           + FS LL   Q N L+H         SANLA R      G G  +     +RG    GG 
Sbjct: 195 EAFSQLLSFEQCNNLRHGG-----ESSANLANRGCGTTGGNGGQRGRGGNNRGRGGNGGN 249

Query: 908 N 910
           N
Sbjct: 250 N 250



 Score = 58.9 bits (141), Expect(2) = 3e-32
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +1

Query: 916  CQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGATNH 1095
            CQ+C K  H+  +CWY +D+++             K A  A+     D +WYVD+GAT+H
Sbjct: 279  CQLCYKRGHTVINCWYRYDEDF---------VPDEKYAGSAATSYGIDTNWYVDTGATDH 329

Query: 1096 ITTDMENLSLKSEYK 1140
            +T ++E L ++  YK
Sbjct: 330  VTGELEKLIVRDHYK 344


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
           Group] gi|108710062|gb|ABF97857.1| retrotransposon
           protein, putative, Ty1-copia subclass, expressed [Oryza
           sativa Japonica Group]
          Length = 1021

 Score =  110 bits (274), Expect(2) = 5e-32
 Identities = 74/262 (28%), Positives = 126/262 (48%), Gaps = 16/262 (6%)
 Frame = +2

Query: 173 SSSNSG------VLTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNS 334
           SSS++G       +  KLTR NFLL K+ +L  +RG R++GYL G    P   I  +D  
Sbjct: 4   SSSSAGSPFSGQAVAEKLTRTNFLLWKAQILPVIRGARMEGYLTGATQAPLAVIDAKDGE 63

Query: 335 GNTTTETNPAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRS 514
             T   + PA++ W+  DQ           + I +QV+   ++ ++W  I       SR+
Sbjct: 64  A-TVKASKPAFEMWITADQQVLGFLLSTLSKEILTQVISMESAAQVWKAITEMLSSQSRA 122

Query: 515 CHVQLKGELYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVI 694
             +  +  L    KG ++++ Y SK+K + D +  AG  +DD   IS +L GL+ +Y+ +
Sbjct: 123 RALNTRLALATTLKGDLSVSDYISKMKVLADEMAFAGKPLDDEELISYVLAGLDDDYEPV 182

Query: 695 STLITSRACEITIEKVFSLLLRQENELKHYNTMSQVSFSANLATR--------KPNNNYG 850
            + +  ++  +++ + +S LL  ++  K  +  +  + S N A R         P N  G
Sbjct: 183 VSSLVGKSEVVSLAECYSQLLSFKSRQKLRHAAAHQASSVNAARRGGGKGGGYTPFNRGG 242

Query: 851 R--GNSQAHYRSRGHCRGGGPN 910
           R  GN+     + G  RGG  N
Sbjct: 243 RSGGNNNGRRSNNGGGRGGRGN 264



 Score = 55.8 bits (133), Expect(2) = 5e-32
 Identities = 26/75 (34%), Positives = 40/75 (53%)
 Frame = +1

Query: 913  ICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGATN 1092
            +C +C K  H   DCWY +D+ +             K A  AS     D +WYVD+GAT+
Sbjct: 276  VCHLCGKTGHVVADCWYRYDENF---------VPENKIAAAASYG--VDTNWYVDTGATD 324

Query: 1093 HITTDMENLSLKSEY 1137
            HIT +++ L+ + +Y
Sbjct: 325  HITGELDKLTTREKY 339


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  100 bits (248), Expect(2) = 7e-32
 Identities = 77/262 (29%), Positives = 124/262 (47%), Gaps = 18/262 (6%)
 Frame = +2

Query: 173 SSSNSGV----------LTFKLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITV 322
           SSS+SG           ++ KL + N  L K+ V AAVRG RL G+L G    P   ++V
Sbjct: 3   SSSSSGTAAVNLSQGHSVSEKLGKGNHALWKAQVSAAVRGARLQGHLTGAVKAPDAELSV 62

Query: 323 RDNSGNTTTETNPAYDYWVQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGM 502
             + G TTT+ NPA++ W   DQ             +  QV    T+ E W  I   +  
Sbjct: 63  TID-GKTTTKPNPAFEDWDANDQLVLGYLLSSLSRDVLIQVATCKTAAEAWRAIEGLYST 121

Query: 503 YSRSCHVQLKGELYYVTKGSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQE 682
            +R+  V  +  L    KG+M IA Y +K++ + D +   G  +D+   +  ++ GLN++
Sbjct: 122 GTRARAVNTRLALTNTKKGTMKIAEYVAKMRALGDEMAAGGRPLDEEDLVQYIIAGLNED 181

Query: 683 YDVISTLITSRACEITIEKVFSLLLRQENELKHYNTMSQ--VSFSANLAT------RKPN 838
           +  I + + +++  IT+ +++S L+  E  L  Y + SQ   +F AN         R  N
Sbjct: 182 FSPIVSNLCNKSDPITVGELYSQLVNFETLLDLYRSTSQGGAAFVANRGRGGGGGGRGGN 241

Query: 839 NNYGRGNSQAHYRSRGHCRGGG 904
           NN G  ++ +  R     R GG
Sbjct: 242 NNGGHSSNGSGGRGAPRGRSGG 263



 Score = 65.5 bits (158), Expect(2) = 7e-32
 Identities = 30/74 (40%), Positives = 43/74 (58%)
 Frame = +1

Query: 916  CQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSGATNH 1095
            CQ+C K  H+A DCWY FD++Y             K A  A+     D +WY+D+GAT+H
Sbjct: 281  CQVCFKRGHTAADCWYRFDEDY---------VADEKLAAAATNSYGIDTNWYIDTGATDH 331

Query: 1096 ITTDMENLSLKSEY 1137
            IT ++E L+ K +Y
Sbjct: 332  ITGELEKLTTKEKY 345


>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
           sativa Japonica Group]
           gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
           protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  108 bits (271), Expect(2) = 3e-31
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 2/236 (0%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGN--TTTETNPAYDYW 376
           KLT+ N  L  + VL A+RG RL+G++ GT   P   +  ++      T    NPAY  W
Sbjct: 22  KLTKQNHSLWSAQVLTALRGARLEGHVLGTSVPPEAELEQKEGEKGEKTVRVPNPAYGEW 81

Query: 377 VQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTK 556
              DQ             I SQV G  T+   W TI + F   S +  + ++  L    K
Sbjct: 82  FATDQQVLGFLFSSLTREIRSQVAGAPTAAAAWKTIENTFSTRSHAGAINVRLALTTTQK 141

Query: 557 GSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIE 736
           G  T+  Y SK++ + D +   G  +DD   ++ +++GL+ E+D +   + ++   +T+ 
Sbjct: 142 GQSTVTEYVSKMRALGDEIAATGKPIDDEELVAYIINGLDSEFDPVVEALIAKNASVTVA 201

Query: 737 KVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGG 904
           +V+S LL  EN +K     +  S        + + N GRG      R RG  RGGG
Sbjct: 202 EVYSQLLGFENRVKIRTACAATS------GNRGSGNQGRGGGNP--RGRGTGRGGG 249



 Score = 54.3 bits (129), Expect(2) = 3e-31
 Identities = 25/79 (31%), Positives = 40/79 (50%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            ++  CQ+C K  H   DCW+ +D+ Y             K    A+     D +WYVD+ 
Sbjct: 269  NRPTCQVCHKKGHVVADCWHRYDENY---------VPDEKLGGAATHAYGVDTNWYVDTE 319

Query: 1084 ATNHITTDMENLSLKSEYK 1140
            AT+HIT  ++ L+ + +YK
Sbjct: 320  ATDHITGQLDKLTTREKYK 338


>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1177

 Score =  108 bits (271), Expect(2) = 3e-31
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 2/236 (0%)
 Frame = +2

Query: 203 KLTRNNFLL*KSLVLAAVRGHRLDGYLFGTKPRPPQTITVRDNSGN--TTTETNPAYDYW 376
           KLT+ N  L  + VL A+RG RL+G++ GT   P   +  ++      T    NPAY  W
Sbjct: 22  KLTKQNHSLWSAQVLTALRGARLEGHVLGTSVPPEAELEQKEGEKGEKTVRVPNPAYGEW 81

Query: 377 VQQDQXXXXXXXXXXXEGIFSQVLGHTTSYELWNTIIHNFGMYSRSCHVQLKGELYYVTK 556
              DQ             I SQV G  T+   W TI + F   S +  + ++  L    K
Sbjct: 82  FATDQQVLGFLFSSLTREIRSQVAGAPTAAAAWKTIENTFSTRSHAGAINVRLALTTTQK 141

Query: 557 GSMTIA*YFSKLKGIVDNLVDAGSLVDDITFISCLLHGLNQEYDVISTLITSRACEITIE 736
           G  T+  Y SK++ + D +   G  +DD   ++ +++GL+ E+D +   + ++   +T+ 
Sbjct: 142 GQSTVTEYVSKMRALGDEIAATGKPIDDEELVAYIINGLDSEFDPVVEALIAKNASVTVA 201

Query: 737 KVFSLLLRQENELKHYNTMSQVSFSANLATRKPNNNYGRGNSQAHYRSRGHCRGGG 904
           +V+S LL  EN +K     +  S        + + N GRG      R RG  RGGG
Sbjct: 202 EVYSQLLGFENRVKIRTACAATS------GNRGSGNQGRGGGNP--RGRGTGRGGG 249



 Score = 54.3 bits (129), Expect(2) = 3e-31
 Identities = 25/79 (31%), Positives = 40/79 (50%)
 Frame = +1

Query: 904  SKQICQICKKPNHSAWDCWYYFDQEYKXXXXXXXXXXXXKAAFIASLDSVADPSWYVDSG 1083
            ++  CQ+C K  H   DCW+ +D+ Y             K    A+     D +WYVD+ 
Sbjct: 269  NRPTCQVCHKKGHVVADCWHRYDENY---------VPDEKLGGAATHAYGVDTNWYVDTE 319

Query: 1084 ATNHITTDMENLSLKSEYK 1140
            AT+HIT  ++ L+ + +YK
Sbjct: 320  ATDHITGQLDKLTTREKYK 338