BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00013122
         (2485 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma ...   644   0.0  
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   637   e-180
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   634   e-179
ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phas...   633   e-178
ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prun...   628   e-177
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   623   e-175
ref|XP_002305685.1| plus-3 domain-containing family protein [Pop...   623   e-175
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   622   e-175
ref|XP_002316628.2| plus-3 domain-containing family protein [Pop...   620   e-175
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   616   e-173
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr...   608   e-171
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   607   e-171
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein...   604   e-170
ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein...   599   e-168
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   567   e-159
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A...   564   e-158
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   563   e-157
ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis th...   557   e-155
ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Caps...   556   e-155
gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]               555   e-155

>ref|XP_007025691.1| PAF1 complex component isoform 1 [Theobroma cacao]
            gi|590624750|ref|XP_007025692.1| PAF1 complex component
            isoform 1 [Theobroma cacao] gi|508781057|gb|EOY28313.1|
            PAF1 complex component isoform 1 [Theobroma cacao]
            gi|508781058|gb|EOY28314.1| PAF1 complex component
            isoform 1 [Theobroma cacao]
          Length = 660

 Score =  644 bits (1661), Expect = 0.0
 Identities = 354/663 (53%), Positives = 438/663 (66%), Gaps = 5/663 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRTG+ GRNRHS P SRR+REG                DHGY +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTGGRNRHSLPPSRRRREGSYSDGGSDSRDDDSDDDHGYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD+                           DLYK+E DR +LAQ
Sbjct: 61   GSQVPLKKRLDPAERDDDQGSQEEGDYDDGVSVHEGDSSDESDVGDDLYKNEDDRRKLAQ 120

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXXX 1655
            MTELERE+ILS+RA +R D++ TE++R+K ++ +  +  KETP                 
Sbjct: 121  MTELERELILSERADKRGDKKFTEKIRSKRENDRPSRSRKETPPLPSSRGVRSSARSADR 180

Query: 1654 XXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXX 1475
              AKDDALNELRAKR+KQQDPE +R+ RDA+   G+              TA+       
Sbjct: 181  AAAKDDALNELRAKRLKQQDPEAHRKLRDASR--GSSGSRGLSPVKRKPFTASSLSSSSQ 238

Query: 1474 XXXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFE 1295
                          +     +   D+    G +  T +D+K ITIRRSKLAKW +EPFFE
Sbjct: 239  SDSESRSNSEDEGSTGDGGMVDSDDDRGMQGPDGPTFDDIKEITIRRSKLAKWFMEPFFE 298

Query: 1294 EVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFG--KSE 1121
            E++VGC+VR+GIG+ +    IYRLC V N+DA++P++ Y LE K+T+KYL+V++G   S 
Sbjct: 299  ELIVGCYVRVGIGRSKSG-PIYRLCMVRNVDATEPERTYKLENKTTYKYLNVVWGNESSA 357

Query: 1120 ARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQ 941
            ARWQM  +S++PP E+EF++ ++++E++G  MPSK +V EK+EA+QKA T+VYSAATVKQ
Sbjct: 358  ARWQMAMISDSPPQEEEFRQLIRELERSGGRMPSKQDVLEKKEALQKAKTFVYSAATVKQ 417

Query: 940  MLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAK 767
            ML EKK+ SSRPLN+AAEK RLRR+LE AQS+ D  E++RI+ RLQ+LE  + ++EKDAK
Sbjct: 418  MLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSKHDEAEVERIKMRLQQLEASRQAQEKDAK 477

Query: 766  AVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXX 587
            AVRL EMN++NRAENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYYV         
Sbjct: 478  AVRLAEMNRKNRAENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVAKPPGADAA 537

Query: 586  XXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSLH 407
                      +  G G  A   +                 GKLVDTSAPVD GTESN LH
Sbjct: 538  AVANGDRIGVIASGNGNDARAAAEAGRAATVAALQEAAGAGKLVDTSAPVDEGTESNMLH 597

Query: 406  NFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRRR 227
            +FE+ ISL  LQ+FGGPQGA  GFMARKQ IEATVGC VPENDGRRH LTL+VSDYKRRR
Sbjct: 598  DFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRRHALTLTVSDYKRRR 657

Query: 226  GLL 218
            GLL
Sbjct: 658  GLL 660


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  637 bits (1644), Expect = e-180
 Identities = 355/665 (53%), Positives = 445/665 (66%), Gaps = 7/665 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRTG+SGRNR++ P SRR+REG                D GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRNALPPSRRRREGSYSDGGSDSRDDDSDDDRGYSSRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD+                           DLYK+E DR +LAQ
Sbjct: 61   GSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNEDDRRKLAQ 120

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXXX 1655
            M+ELEREMILS+RA ++ D+ LTER+R+K +S +  +  KETP                 
Sbjct: 121  MSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRTSARSADR 180

Query: 1654 XXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXX 1475
              AKDDALNEL+A+R+KQQDPE +R+ RDA+ RG                T+A       
Sbjct: 181  AAAKDDALNELKARRLKQQDPEAHRKLRDASRRGS--GSRGFSPIKRKRFTSASLSSSSS 238

Query: 1474 XXXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFE 1295
                            G+  + +SD++  PG +  T +D++ ITIRRSKLAKW +EP+FE
Sbjct: 239  ESESRSHSEDEGS--TGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEPWFE 296

Query: 1294 EVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SE 1121
            E++VGCFVR+GIG+ +    IYRLC V N+DA+DPD+ Y LE K+T+KYL+VI+G   S 
Sbjct: 297  ELIVGCFVRVGIGRSKSGP-IYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSA 355

Query: 1120 ARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQ 941
            ARWQM  +S++ P E E+K+WV+++E++G  MP+K ++ EK+EAI+K+ T+VYSAATVKQ
Sbjct: 356  ARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQ 415

Query: 940  MLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAK 767
            ML EKK+ASSRPLNVAAEK RLRRELE AQS++D  E++RI+AR+QELE  + ++ KDAK
Sbjct: 416  MLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAK 475

Query: 766  AVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXX 587
            A+RL EMN++NRAENF+NASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYV         
Sbjct: 476  AIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGDAA 535

Query: 586  XXXXXXXXAPLVPG--LGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNS 413
                      +       ++A V +                 GKLVDT+APVD GTESN+
Sbjct: 536  AATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNT 595

Query: 412  LHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKR 233
            LHNFEL ISL  LQKFGG QGAQ GFMARKQ IEAT+GC V END +RH LTL+VSDYKR
Sbjct: 596  LHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYKR 655

Query: 232  RRGLL 218
            RRGLL
Sbjct: 656  RRGLL 660


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
          Length = 658

 Score =  634 bits (1636), Expect = e-179
 Identities = 362/674 (53%), Positives = 439/674 (65%), Gaps = 16/674 (2%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MA+LENLLLEAAGRT S+GRNRHS P SRR+REG                D GY NRKPS
Sbjct: 1    MAELENLLLEAAGRTRSAGRNRHSIPPSRRRREGSYSDGGSDSRDDDSDDDRGYANRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+E DDD+                            LYKD+ DR +LA+
Sbjct: 61   GSQVPLKKRLDPTEMDDDQGSEEEGDDDRGSDREGDSESDVGSD---LYKDDDDRRKLAE 117

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK--QSGKKDQPVKETPTPXXXXXXXXXXXXXX 1658
            MTEL+REMIL DRA +++D+ L E++R K    GK  Q  KETP P              
Sbjct: 118  MTELQREMILLDRASKKEDKNLKEKLRPKWDNKGKATQSRKETPLPSSRVRSSARSADRA 177

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
                KDDALNELRAKR+KQQDPE + + RDA+ RGG+                A      
Sbjct: 178  AA--KDDALNELRAKRLKQQDPEAHGKLRDAS-RGGS--GSRNLLHNKRKSYTATSLSSS 232

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPF 1301
                           S G+  + +SD+E+  PG E LT +D+K +T+RRSKLAKWL+EPF
Sbjct: 233  SQSDSESESQSEDEGSTGDGGMIDSDDERGIPGSEGLTFDDIKEVTVRRSKLAKWLMEPF 292

Query: 1300 FEEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK-- 1127
            FEE++VGCFVR+GIG+ +    IYRLC V N+DAS+PD+QY L+ K THKYL+V++G   
Sbjct: 293  FEELIVGCFVRVGIGRSKSGP-IYRLCMVRNVDASEPDRQYKLDNKITHKYLNVVWGNEN 351

Query: 1126 SEARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATV 947
            S ARWQM  VS++ P E+EFK+WV+++E++G  MP+K+++ +K+E+I+K  T+VYSAATV
Sbjct: 352  SAARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKHDILDKKESIKKINTFVYSAATV 411

Query: 946  KQMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKD 773
            KQML EKK+AS+RPLN+A EK RLRRELE AQS+ D  E+DRI+ RLQELE  + +++ D
Sbjct: 412  KQMLQEKKSASARPLNIALEKDRLRRELEVAQSKNDEVEVDRIKTRLQELEASRKAKQTD 471

Query: 772  AKAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXX 593
            AKA+RL EMN++NR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYYV       
Sbjct: 472  AKAIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVGKPGEVK 531

Query: 592  XXXXXXXXXXAPLVPGLGASAD---------VISXXXXXXXXXXXXXXXXXGKLVDTSAP 440
                             GAS D         V +                 GKLVDT+AP
Sbjct: 532  EDSGANAGNN-------GASTDAENNGRHGIVAAEAGIAATEAALEAAADAGKLVDTNAP 584

Query: 439  VDLGTESNSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPL 260
            VD GT SN LHNFEL ISL+ LQKFGGPQGAQ GFMARKQ IEATVGC VPENDGRRH L
Sbjct: 585  VDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHAL 644

Query: 259  TLSVSDYKRRRGLL 218
            TLSV DYKRRRGLL
Sbjct: 645  TLSVGDYKRRRGLL 658


>ref|XP_007159299.1| hypothetical protein PHAVU_002G226300g [Phaseolus vulgaris]
            gi|561032714|gb|ESW31293.1| hypothetical protein
            PHAVU_002G226300g [Phaseolus vulgaris]
          Length = 654

 Score =  633 bits (1633), Expect = e-178
 Identities = 359/667 (53%), Positives = 443/667 (66%), Gaps = 9/667 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRTG+SGRNRHS P SRR+ +G                +  Y +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTSGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDPSERDDD                            DLYKDE DR +L++
Sbjct: 61   GSQVPLKKRLDPSERDDDLGSQEEADDDDGHSDHDGDSSDESNIGDDLYKDEDDRRKLSE 120

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXXX 1655
            MTEL+REMILSDRA ++DD+ L  ++ +K + GK   P K++P                 
Sbjct: 121  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVSVPRKQSPP--MSSSRMRASARSAD 178

Query: 1654 XXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXX 1475
              AK+DALNELRAKR+KQQDPE +R+ R+A+   G               + +       
Sbjct: 179  RSAKNDALNELRAKRLKQQDPEAHRKLREASRNAGPRHFSPPKRKPFTSTSLSSSSHSES 238

Query: 1474 XXXXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPFF 1298
                            G+  +G+SD++++  G E  + +D+K ITIRRSKLAKW +EPFF
Sbjct: 239  ESRSHSDDEGS----TGDGGIGDSDDDRALTGSEGPSFQDIKEITIRRSKLAKWFMEPFF 294

Query: 1297 EEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--S 1124
            EE++VGCFVR+GIG+ +    IYRLC V N+DAS+PD+QY LE K+T+KYL+V++G   S
Sbjct: 295  EELIVGCFVRVGIGRSKTGP-IYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 353

Query: 1123 EARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVK 944
             ARWQM  VS++ PLE+EFK+WV++++++G  MP+K +V EK++AIQKAIT+VYSAATVK
Sbjct: 354  AARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPTKQDVLEKKQAIQKAITFVYSAATVK 413

Query: 943  QMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDA 770
            QML EKK+AS+RPLNVAAEK RLRRELE AQS+ D  E+DRI+ARLQELE  + +++KDA
Sbjct: 414  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVDRIKARLQELEASRHAKQKDA 473

Query: 769  KAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXX 590
            KA++L EMN++NR ENFKNASELKPVNT LKAGEAGYDPFSRRWTRSRNYY         
Sbjct: 474  KALKLAEMNRKNRFENFKNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYTGEKAAAGN 533

Query: 589  XXXXXXXXXAPLVPGLGAS---ADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTES 419
                       +V G G +   A V +                 GKLVDTSAPVD GTES
Sbjct: 534  NSVNG------IVAGPGTNSTGAPVTAEAGLVATAAALEAAADAGKLVDTSAPVDQGTES 587

Query: 418  NSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDY 239
            N LHNFEL ISLA LQK+GG QGAQ GFMARKQ IE+TVG  V ENDGRRH LTLSVSDY
Sbjct: 588  NMLHNFELPISLALLQKYGGAQGAQAGFMARKQRIESTVGFRVLENDGRRHSLTLSVSDY 647

Query: 238  KRRRGLL 218
            KRRRGLL
Sbjct: 648  KRRRGLL 654


>ref|XP_007217631.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
            gi|462413781|gb|EMJ18830.1| hypothetical protein
            PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  628 bits (1620), Expect = e-177
 Identities = 359/671 (53%), Positives = 436/671 (64%), Gaps = 13/671 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRT S+G++RHS   SRR+R G                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTSSAGKSRHSHSSSRRRRGGSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            G+Q+PLKKRLDP+E DD++                            LYKDE DR +LA+
Sbjct: 61   GTQVPLKKRLDPTEMDDEQGSQEEGDYNDSGSDRGGDSNESDVGSD-LYKDEDDRRKLAE 119

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPVKETPTPXXXXXXXXXXXXXXXX 1652
            M+EL+RE+ILSDRAQ++DD+ L E+ R         P KETP P                
Sbjct: 120  MSELQRELILSDRAQKKDDKSLKEKFR---------PKKETP-PLPSSRVRSSARSADRA 169

Query: 1651 XAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXXX 1472
             AKDDALNELRAKR+KQQDPE +R+ RDA+   G+              TA         
Sbjct: 170  AAKDDALNELRAKRLKQQDPEAHRKLRDASR--GSSGSRSFSHMTRKSFTAVGRSSSSQS 227

Query: 1471 XXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFEE 1292
                           G D + +SD+E+S G   LT +D+K ITIRRSKLAKWL+EPFFEE
Sbjct: 228  DSDSRSHSEDDGS-TGEDPMMDSDDERSEG---LTFDDIKEITIRRSKLAKWLMEPFFEE 283

Query: 1291 VVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SEA 1118
            ++VGCFVR+GIG+ +    IYRLC V N+DASDPD++Y LE K+THKYL+V++G   S A
Sbjct: 284  LIVGCFVRVGIGRSKSGP-IYRLCMVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAA 342

Query: 1117 RWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQM 938
            RWQM  +S++ PLE+EFK+WV+++E++G  +PSK +V EK+EAI+K  T+VYSAATVKQM
Sbjct: 343  RWQMAMISDSAPLEEEFKQWVREVERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQM 402

Query: 937  LHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAKA 764
            + EKK+ASSRPLN+A EK RLRRELE AQS+ D  E++RI+ RLQ+LE  + S+ KD+KA
Sbjct: 403  IEEKKSASSRPLNIALEKDRLRRELEVAQSKHDDAEVERIKTRLQQLEARRQSQGKDSKA 462

Query: 763  VRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXX 584
            VRL EMN++NR ENFKNASELKPV T LKAGEAGYDPFSRRWTRSRNYYV          
Sbjct: 463  VRLAEMNRKNRVENFKNASELKPVKTGLKAGEAGYDPFSRRWTRSRNYYV-------SKP 515

Query: 583  XXXXXXXAPLVPGLGASADVIS---------XXXXXXXXXXXXXXXXXGKLVDTSAPVDL 431
                     +V   GA AD+ S                          GKL+DTSAPVD 
Sbjct: 516  GEQKGEAEAIVDADGALADIESNGTAVVGAVRAGMAATAAALEAAAGAGKLIDTSAPVDF 575

Query: 430  GTESNSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLS 251
            GTESN +HNFEL ISLA LQKFGGPQGAQ GF+ARKQ IEATVGC VPENDGRRH LTL+
Sbjct: 576  GTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRRHALTLT 635

Query: 250  VSDYKRRRGLL 218
            VSDYKRR GLL
Sbjct: 636  VSDYKRRMGLL 646


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
            RNA polymerase-associated protein RTF1 homolog isoform X2
            [Glycine max]
          Length = 656

 Score =  623 bits (1607), Expect = e-175
 Identities = 353/664 (53%), Positives = 436/664 (65%), Gaps = 6/664 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRTG++GRNRHS P SRR+ +G                +  Y +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPSSRRRHDGAYSDGGSDSRDEDSDDELNYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD                             LYKDE DR +L++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDD-LYKDEDDRRKLSE 119

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXXX 1655
            MTEL+REMILSDRA ++DD+ L  ++ +K + GK   P K++P                 
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPP--MSSSRMRASARSAD 177

Query: 1654 XXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXX 1475
              AK+DALNELRAKR+KQQDPE +RR R+A+   G+              + +       
Sbjct: 178  RSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSSSHSES 237

Query: 1474 XXXXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPFF 1298
                            G+  + +SD++++  G E  + +DVK ITIRRSKLAKW +EPFF
Sbjct: 238  ESRSHSDDEGS----TGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFF 293

Query: 1297 EEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--S 1124
            EE++VGCFVR+GIG+ +    IYRLC V N+DAS+PD+QY LE K+T+KYL+V++G   S
Sbjct: 294  EELIVGCFVRVGIGRSKTGP-IYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 1123 EARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVK 944
             ARWQM  VS++ PLE+EFK+WV++++++G  MPSK +V EK++AIQKAIT+VYSAATVK
Sbjct: 353  AARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 943  QMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDA 770
            QML EKK+AS+RPLNVAAEK RLRRELE AQS+ D  E++RI+ RL ELE  + +++KDA
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDA 472

Query: 769  KAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXX 590
            KA++L EMN++NR ENFKNASE+KPVNT LKAGEAGYDPFSRRWTRSRNYY         
Sbjct: 473  KALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 589  XXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSL 410
                            G  A V +                 GKLVDTSAPVD GTESN L
Sbjct: 533  AGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNML 592

Query: 409  HNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRR 230
            HNFEL ISLA LQKFGG QGAQ GFMARKQ IEATVG  V ENDGRRH LTL+VSDYKRR
Sbjct: 593  HNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRR 652

Query: 229  RGLL 218
            RGLL
Sbjct: 653  RGLL 656


>ref|XP_002305685.1| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 662

 Score =  623 bits (1606), Expect = e-175
 Identities = 352/667 (52%), Positives = 437/667 (65%), Gaps = 9/667 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHS-RPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKP 2015
            MADLENLLLEAAGRTG SGRNR+S  P  RR+REG                D GY NRKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSILPSRRRKREGSYSDGGSDSRDDDSDDDRGYANRKP 60

Query: 2014 SGSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLA 1835
            SGSQ+PLKKRL+ +ERD +                            DLYKDE DR++LA
Sbjct: 61   SGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDEDDRKKLA 120

Query: 1834 QMTELEREMILSDRAQRRDDQRLTERVRAKQ-SGKKDQPVKETPTPXXXXXXXXXXXXXX 1658
            QM+EL+RE+IL+DRA ++ D+ LTE++R K+ + K  +  KETP                
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
               AKDDALNELRAKR+KQQDPE +R+ RD +   G+              T+A      
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDVSR--GSAGSRGFSQVKKNNFTSA--SLSS 236

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFF 1298
                           S G+  + +SDE+  PG +  T ED+K ITIRR+KLAKW +EP+F
Sbjct: 237  SSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEPWF 296

Query: 1297 EEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFG--KS 1124
            EE+++GCFVR+GIG+ +    +YRLC V N+DA++PDK Y LE KST+KYL+V +G   S
Sbjct: 297  EELIIGCFVRVGIGRSKSG-PVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTS 355

Query: 1123 EARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVK 944
             ARWQM  VS++ P E+E+K+WV+++E  G  +PSK ++ EK+EAI+K+ T+VYSAATVK
Sbjct: 356  AARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 415

Query: 943  QMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDA 770
            QML EKK+ASSRPLNVAAEK RLRRELE AQS+ D  E++RI AR++ELE  + ++ KDA
Sbjct: 416  QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDA 475

Query: 769  KAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXX 590
            KA+RL EMN++NR ENF+NASE+KPVNT LKAGEAGYDPFSRRWTRSRNYYV        
Sbjct: 476  KAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADD 535

Query: 589  XXXXXXXXXAPLVPGLGAS---ADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTES 419
                        V    ++   A V+S                 GKLVDTSAPVD GTES
Sbjct: 536  PVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTES 595

Query: 418  NSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDY 239
            N++H+FEL ISL  LQ+FGGPQGAQ GFMARKQ IEATVGC VPENDGRRH LTL+V DY
Sbjct: 596  NTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDY 655

Query: 238  KRRRGLL 218
            KRRRGLL
Sbjct: 656  KRRRGLL 662


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  622 bits (1604), Expect = e-175
 Identities = 353/664 (53%), Positives = 421/664 (63%), Gaps = 6/664 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRT ++GRNRHS P SRRQREG                D GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNAAGRNRHSHPPSRRQREGSYSDAGSDSRDDDSDDDRGYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD                            DLYKD+ DR +LA 
Sbjct: 61   GSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDDDRRKLAG 120

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPVKETPTPXXXXXXXXXXXXXXXX 1652
            M+EL+REMILSDRA +++D+ L E +RAK    K  P ++   P                
Sbjct: 121  MSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSSARSADRA 180

Query: 1651 XAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXXX 1472
             AKDDALNELRAKR+KQQDPE +R+ RDA+   G               TA         
Sbjct: 181  AAKDDALNELRAKRLKQQDPEAHRKLRDASR--GNANSRRFSPTKRKPFTAPSLSSSSQS 238

Query: 1471 XXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFEE 1292
                         +     +   DE   PG +  T ED+K +TIRRSKLAKWL+EPFFEE
Sbjct: 239  ESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLMEPFFEE 298

Query: 1291 VVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SEA 1118
            ++VGCFVR+GIG+ R    IYRLC V N+DA++PD+QY LE K THKYL+VI+G   S A
Sbjct: 299  LIVGCFVRVGIGRSRSGP-IYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNEASAA 357

Query: 1117 RWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQM 938
            RWQM  VS++ PLE E+K+WV+++E+TG  M SK ++ EK+EAIQK   +VYSAATVKQM
Sbjct: 358  RWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAATVKQM 417

Query: 937  LHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELEKISR--EKDAKA 764
            L +KK+AS+RPLN+AAEK RLRRE++ A S+ D  E++RI+ RLQ+LE   R   KDAKA
Sbjct: 418  LQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMKDAKA 477

Query: 763  VRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYV--XXXXXXXX 590
            +RL EMN++NR ENFKNASEL+P+   LKAGEAGYDPFSRRWTRSRNYYV          
Sbjct: 478  IRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGEANGAA 536

Query: 589  XXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSL 410
                      P +      A   S                 GKLVDT+APVD GTESNSL
Sbjct: 537  EAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTESNSL 596

Query: 409  HNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRR 230
            HNFEL ISLA LQKFGG  GAQ GF+ARKQ IEATVG  VPENDGRRH LTL+VSDYKRR
Sbjct: 597  HNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSDYKRR 656

Query: 229  RGLL 218
            RGLL
Sbjct: 657  RGLL 660


>ref|XP_002316628.2| plus-3 domain-containing family protein [Populus trichocarpa]
            gi|550327599|gb|EEE97240.2| plus-3 domain-containing
            family protein [Populus trichocarpa]
          Length = 664

 Score =  620 bits (1600), Expect = e-175
 Identities = 350/667 (52%), Positives = 432/667 (64%), Gaps = 9/667 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQR-EGXXXXXXXXXXXXXXXXDHGYVNRKP 2015
            MADLENLLLEAAGRTG SGRNR+S P SRR++ EG                D GY +RKP
Sbjct: 1    MADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASRKP 60

Query: 2014 SGSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLA 1835
            SGSQ+PLKKRL+ +ERDD+                            DLYKDE DR++LA
Sbjct: 61   SGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDEDDRQKLA 120

Query: 1834 QMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKD-QPVKETPTPXXXXXXXXXXXXXX 1658
            QM+EL+RE+IL+DRA ++ D+ LTE++R+K+   K  +  KETP                
Sbjct: 121  QMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARSAD 180

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
               AKDDALNELRAKR+KQQDPE +R+ RDA+   G+              T+A      
Sbjct: 181  RAAAKDDALNELRAKRLKQQDPEAHRKLRDASR--GSAGSRGFAQVKKNNFTSARLSSSS 238

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFF 1298
                           S G+  + +SDE+  PG    T ED+K ITIRR+KLAKW +EP+F
Sbjct: 239  SESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWF 298

Query: 1297 EEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFG--KS 1124
            EE+++GCFVR+GIG+ +    +YRLC V N+DA++PDK Y LE KST+KYL+V +G   S
Sbjct: 299  EELIIGCFVRVGIGRSKTGP-VYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSS 357

Query: 1123 EARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVK 944
             ARWQM  VS++ P E+E+K+WV++ E+ G  +PSK ++ EK+EAI+K+ T+VYSAATVK
Sbjct: 358  AARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVK 417

Query: 943  QMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDA 770
            QML EKK+ASSRPLNVAAEK RLRRELE AQSR D  E++RI+AR+ ELE  + ++ KDA
Sbjct: 418  QMLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDA 477

Query: 769  KAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXX 590
            KA+RL EMN++NR ENF+NASELKP+NT LKAGEAGYDPFSRRWTRSRNYYV        
Sbjct: 478  KALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDD 537

Query: 589  XXXXXXXXXAPLVPGLGAS---ADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTES 419
                             +    A  +S                 GKLVDTSAPVD GTES
Sbjct: 538  AVAASNSEANDTAAVADSDHVVAGAMSESGVAATAAALDAAADAGKLVDTSAPVDQGTES 597

Query: 418  NSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDY 239
            N++HNFEL ISL  LQKF GPQGA  GFMARKQ IEA VGC V ENDGRRH LTL+V DY
Sbjct: 598  NTMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDY 657

Query: 238  KRRRGLL 218
            KRRRGLL
Sbjct: 658  KRRRGLL 664


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  616 bits (1589), Expect = e-173
 Identities = 348/664 (52%), Positives = 432/664 (65%), Gaps = 6/664 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRTG++GRNRHS P SRR+ +G                +  Y +RKPS
Sbjct: 1    MADLENLLLEAAGRTGTAGRNRHSLPPSRRRHDGAYSDGGSDSRDDDSDDELNYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD                             LYKDE DR +L++
Sbjct: 61   GSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDD-LYKDEDDRRKLSE 119

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXXX 1655
            MTEL+REMILSDRA ++DD+ L  ++ +K + GK   P K++P                 
Sbjct: 120  MTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPP--MSSSRMRASARSAD 177

Query: 1654 XXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXX 1475
              AK+DALNELRAKR+KQQDPE +RR R+A+   G               + +       
Sbjct: 178  RSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSSSHSES 237

Query: 1474 XXXXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPFF 1298
                            G+  + +SD++++  G E  + +D+K ITIRRSKLAKW +EPFF
Sbjct: 238  ESRSHSDDEGS----TGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPFF 293

Query: 1297 EEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--S 1124
            EE++VGCFVR+GIG+ +    IYRLC V N+DAS+PD+QY LE K+T+KYL+V++G   S
Sbjct: 294  EELIVGCFVRVGIGRSKTGP-IYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 1123 EARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVK 944
             ARWQM  VS++ P+E+EFK+WV++++ +G  MPSK +V EK++AIQKAIT+VYSAATVK
Sbjct: 353  AARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 943  QMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDA 770
            QML EKK+AS+RPLNVAAEK RLRRELE AQS+ D  E++RI+ RLQELE  + +++KDA
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDA 472

Query: 769  KAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXX 590
            KA++L EMN++NR ENFKNASELKPVN  LKAGEAGYDPFSRRWTRSRNYY         
Sbjct: 473  KALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 589  XXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSL 410
                               A V +                 GKLVDTSAPVD GTESN L
Sbjct: 533  AGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNML 592

Query: 409  HNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRR 230
            HNFEL ISLA LQK+GG  GAQ GFMARKQ IE+TVG  V ENDGRRH LTL+VSDYKRR
Sbjct: 593  HNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRR 652

Query: 229  RGLL 218
            RGLL
Sbjct: 653  RGLL 656


>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
            gi|557524836|gb|ESR36142.1| hypothetical protein
            CICLE_v10028000mg [Citrus clementina]
          Length = 643

 Score =  608 bits (1568), Expect = e-171
 Identities = 344/662 (51%), Positives = 422/662 (63%), Gaps = 4/662 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRT S+GRNRHS   S+R+REG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDN--RGYGSRKPS 58

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD+                               +E D +   Q
Sbjct: 59   GSQVPLKKRLDPAERDDDQGSQEEGDYDGGASEHEGDS-----------SNESDDDNHGQ 107

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPVKETPTPXXXXXXXXXXXXXXXX 1652
            MTELEREM++ +R  ++ D+ L ++ R+++  +  +  KETP                  
Sbjct: 108  MTELEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRA 167

Query: 1651 XAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXXX 1472
             AKDDALNELRAKR+KQQDPE +RR RDA+ RGG+               A         
Sbjct: 168  AAKDDALNELRAKRLKQQDPEAHRRLRDAS-RGGSGSRVLSPVKRKAFTPAGLSSSSQSE 226

Query: 1471 XXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFEE 1292
                           G+  + +SD++ +PG    T +D+K ITIRRSKLAKW +EPFFEE
Sbjct: 227  SESRSHSDDEGS--TGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEE 284

Query: 1291 VVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SEA 1118
            ++VGCFVR+GIG+ ++   IYRLC V N+DA++PD+ Y LE ++T KYL+V +G   S A
Sbjct: 285  LIVGCFVRVGIGRSKNGP-IYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAA 343

Query: 1117 RWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQM 938
            RWQM  VS++PPLE+EFK+W++++E+ G  MPSK +V EK+E+IQK  T+VYSAATVKQM
Sbjct: 344  RWQMAMVSDSPPLEEEFKQWLREVERNGGRMPSKQDVLEKKESIQKINTFVYSAATVKQM 403

Query: 937  LHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAKA 764
            L EKK+ASSRPLNVAAEK RLRRELE AQSR D  +++RI+ RLQELE  + S+ KDAKA
Sbjct: 404  LQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDDVDMERIKKRLQELEASRDSKVKDAKA 463

Query: 763  VRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXX 584
            +RL EMN++NR ENFKNASELK VNTSLKAGEAGYDPFSRRWTRSRNYY+          
Sbjct: 464  IRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAE 523

Query: 583  XXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSLHN 404
                    P   G                          GKLVDT+AP+DLGTESN LH+
Sbjct: 524  ANGDKNGVP--GGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHD 581

Query: 403  FELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRRRG 224
            FEL ISL  L+KFGGPQG   GFMARKQ IEATVGC VPENDGRRH LTL+V DYKRRRG
Sbjct: 582  FELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRRG 641

Query: 223  LL 218
            LL
Sbjct: 642  LL 643


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
            vesca subsp. vesca]
          Length = 657

 Score =  607 bits (1565), Expect = e-171
 Identities = 351/665 (52%), Positives = 425/665 (63%), Gaps = 7/665 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADL++LLLEAAGRT S  ++RHS   S+R+R+                   GY +RKPS
Sbjct: 1    MADLDDLLLEAAGRTSSGRKSRHSHSSSKRRRDDSYSDGGSDSRGDDSDDGRGYASRKPS 60

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDPSE  D+                            DLYKDE DR +LA+
Sbjct: 61   GSQVPLKKRLDPSEVGDEH-DSQDEGDYNDSGSDRGGESNESDVGSDLYKDENDRRKLAE 119

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXXX 1655
            M+EL+RE+ILSDRAQ++DD+ L E+ R K   GK  Q  K TP P               
Sbjct: 120  MSELQRELILSDRAQKKDDKSLKEKFRPKWDKGKATQSRKVTP-PLPSSRVRSSARSADR 178

Query: 1654 XXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXX 1475
              AKDDALNELRAKR+KQQDPE +R+ RD +   G+              +A        
Sbjct: 179  AAAKDDALNELRAKRLKQQDPEAHRKLRDVSR--GSVGSKNFSHTIKKSFSAVRRSSSSQ 236

Query: 1474 XXXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFE 1295
                          SA  D+  +SD+E+  G + LT ED+K ITIRRS+LAKWL+EPFFE
Sbjct: 237  SDSESRSHSDDDGSSA--DDAIDSDDER--GNQGLTFEDIKEITIRRSRLAKWLMEPFFE 292

Query: 1294 EVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SE 1121
            E++VGC VR+GIGK +    IYRLC V N+D+SDPD+QY LE K+THKYL+V++G   S 
Sbjct: 293  ELIVGCCVRVGIGKTKSGRPIYRLCSVCNVDSSDPDRQYKLENKTTHKYLNVVWGNENSA 352

Query: 1120 ARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQ 941
            ARWQM  VS++ PLE+E+ +WV+++EK G  +PSK +V EK+EAI+K  T+VYSA TVKQ
Sbjct: 353  ARWQMAMVSDSLPLEEEYDQWVREVEKNGGRLPSKEDVLEKKEAIKKTNTFVYSAKTVKQ 412

Query: 940  MLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAK 767
            M+ EKK+ASSRPLN+A EK RLRRELE AQS+ D  E++RI+ARL++LE  + S+ KD+K
Sbjct: 413  MIQEKKSASSRPLNIALEKDRLRRELEIAQSKHDDAEVERIKARLEQLEARQQSQGKDSK 472

Query: 766  AVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXX 587
            AVRL EMN++NR +NFKNAS LKPV T LKAGEAGYDPFSRRWTRSRNYYV         
Sbjct: 473  AVRLAEMNRKNRVDNFKNASGLKPVKTGLKAGEAGYDPFSRRWTRSRNYYVSKPDEQKDD 532

Query: 586  XXXXXXXXAPL--VPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNS 413
                      L  V   G    V                   GKL+DT APVD GT SN 
Sbjct: 533  AEANAVAAESLAEVETNGTGGVVAVRAGLEATAAALEAAAGAGKLIDTMAPVDQGTSSNP 592

Query: 412  LHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKR 233
            LHNFEL ISLA LQKFGGPQGAQ GFMARKQ IEATVG  VPE+DGRRH LTLSVSDYKR
Sbjct: 593  LHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRHALTLSVSDYKR 652

Query: 232  RRGLL 218
            RRGLL
Sbjct: 653  RRGLL 657


>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Citrus sinensis] gi|568867309|ref|XP_006486981.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Citrus sinensis]
          Length = 643

 Score =  604 bits (1558), Expect = e-170
 Identities = 342/662 (51%), Positives = 421/662 (63%), Gaps = 4/662 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            MADLENLLLEAAGRT S+GRNRHS   S+R+REG                  GY +RKPS
Sbjct: 1    MADLENLLLEAAGRTNSAGRNRHSASSSKRRREGSYSGSDSRDDDSDDN--RGYGSRKPS 58

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRLDP+ERDDD+                               +E D +   Q
Sbjct: 59   GSQVPLKKRLDPTERDDDQGSQEEGDYDGGASEHEGDS-----------SNESDDDNHGQ 107

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPVKETPTPXXXXXXXXXXXXXXXX 1652
            MTELEREM++ +R  ++ D+ L ++ R+++  +  +  KETP                  
Sbjct: 108  MTELEREMMIFERDDKKVDKNLRDKFRSRREERSTRSTKETPPLPSSRSARLAARSADRA 167

Query: 1651 XAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXXX 1472
             AKDDALNELRAKR+KQQDPE +RR RDA+ RGG+               A         
Sbjct: 168  AAKDDALNELRAKRLKQQDPEAHRRLRDAS-RGGSGSRVLSPVKRKAFTPAGLSSSSQSE 226

Query: 1471 XXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFFEE 1292
                           G+  + +SD++ +PG    T +D+K ITIRRSKLAKW +EPFFEE
Sbjct: 227  SESRSHSDDEGS--TGDGGMADSDDDGAPGSGRPTYDDIKEITIRRSKLAKWFMEPFFEE 284

Query: 1291 VVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SEA 1118
            ++VGCFVR+GIG+ ++   IYRLC V N+DA++PD+ Y LE ++T KYL+V +G   S A
Sbjct: 285  LIVGCFVRVGIGRSKNGP-IYRLCMVRNVDATEPDRSYKLENRTTCKYLNVTWGNESSAA 343

Query: 1117 RWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQM 938
            RWQM  VS++PPLE+EFK+W++++E+    MPSK +V EK+++IQK  T+VYSAATVKQM
Sbjct: 344  RWQMAMVSDSPPLEEEFKQWLREVERNSGRMPSKQDVLEKKDSIQKINTFVYSAATVKQM 403

Query: 937  LHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAKA 764
            L EKK+ASSRPLNVAAEK RLRRELE AQSR D  +++RI+ RLQELE  + S+ KDAKA
Sbjct: 404  LQEKKSASSRPLNVAAEKDRLRRELEVAQSRHDEVDMERIKKRLQELEASRDSKVKDAKA 463

Query: 763  VRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXX 584
            +RL EMN++NR ENFKNASELK VNTSLKAGEAGYDPFSRRWTRSRNYY+          
Sbjct: 464  IRLAEMNRKNRVENFKNASELKRVNTSLKAGEAGYDPFSRRWTRSRNYYISKPGEEVTAE 523

Query: 583  XXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSLHN 404
                    P   G                          GKLVDT+AP+DLGTESN LH+
Sbjct: 524  ANGDKNGVP--GGANGEEGATGEVGMAATEAALEAAAGAGKLVDTNAPLDLGTESNMLHD 581

Query: 403  FELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRRRG 224
            FEL ISL  L+KFGGPQG   GFMARKQ IEATVGC VPENDGRRH LTL+V DYKRRRG
Sbjct: 582  FELDISLNALKKFGGPQGVLAGFMARKQRIEATVGCQVPENDGRRHALTLTVGDYKRRRG 641

Query: 223  LL 218
            LL
Sbjct: 642  LL 643


>ref|XP_004505022.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
            [Cicer arietinum] gi|502142571|ref|XP_004505023.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform X2 [Cicer arietinum]
          Length = 658

 Score =  599 bits (1544), Expect = e-168
 Identities = 346/668 (51%), Positives = 432/668 (64%), Gaps = 10/668 (1%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTG-SSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKP 2015
            MADLENLLLEAAGRTG ++GRNRHS P SRR+R+G                +  Y +RKP
Sbjct: 1    MADLENLLLEAAGRTGGAAGRNRHSIPPSRRRRDGSYSDGGSDSRDDDSDDELNYPSRKP 60

Query: 2014 SGSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLA 1835
            SGSQ+PLKKRLDP+ERDDD                            DLYKDE DR +L+
Sbjct: 61   SGSQVPLKKRLDPTERDDDLGSQEEADDDDGRSDREGDSSDESNIGDDLYKDEDDRRKLS 120

Query: 1834 QMTELEREMILSDRAQRRDDQRLTERVRAK-QSGKKDQPVKETPTPXXXXXXXXXXXXXX 1658
            +M+EL+REMILSDRA ++DD+ L  ++ +K + GK     K++P                
Sbjct: 121  EMSELQREMILSDRASKKDDKSLLGKIASKREKGKAIMTGKQSPP--LSSSRMRASARSA 178

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
               AK+ ALNELRAKR+KQQDPE  RR R+A+   G                 +      
Sbjct: 179  DRSAKNVALNELRAKRLKQQDPEARRRLREASRNSGPRRFSPPKRKSFTSANLSSSSHSD 238

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPF 1301
                             G+  + +SD++++  G E  + +D+K ITIRRSKLAKW +EPF
Sbjct: 239  SDSRSHSDDEGS----TGDGGIADSDDDRALSGSEGPSFQDIKEITIRRSKLAKWFMEPF 294

Query: 1300 FEEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK-- 1127
            FEE++VGCFVR+GIG+ +    IYRLC V N+D+SDPD+QY LE ++THKYL+V++G   
Sbjct: 295  FEELIVGCFVRVGIGRSKTGP-IYRLCMVKNVDSSDPDRQYKLENRTTHKYLNVVWGNES 353

Query: 1126 SEARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATV 947
            S ARWQM  VS++ PLE+EFK+WV+++E++G  MP+K +V EK++AIQK IT+VYSA TV
Sbjct: 354  SAARWQMAMVSDSFPLEEEFKQWVKEVERSGGRMPTKQDVLEKKQAIQKIITFVYSADTV 413

Query: 946  KQMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKD 773
            KQML EKK++SSRPLNVAAEK RLRRE+E AQS+ D  E++RI+ R+QELE  + ++ KD
Sbjct: 414  KQMLQEKKSSSSRPLNVAAEKDRLRREMEIAQSKNDEAEVERIKTRVQELEASRHAKVKD 473

Query: 772  AKAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXX 593
            AKA++L EMN++NR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTRSRNYYV       
Sbjct: 474  AKALKLAEMNRKNRFENFKNASELRPVNIGLKAGEAGYDPFSRRWTRSRNYYVAKPGEKA 533

Query: 592  XXXXXXXXXXAPLVPGLGAS---ADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTE 422
                        LV   G++     V +                 GKLVDTSAPVD GTE
Sbjct: 534  AARKNTTNV---LVADAGSNITGVPVTAESGVVATAAALEAAADAGKLVDTSAPVDQGTE 590

Query: 421  SNSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSD 242
            SN LHNFEL ISLA L K+GG QGAQ GFMARKQ +EATVG  V ENDGRRH LTLSV D
Sbjct: 591  SNFLHNFELPISLALLHKYGGAQGAQAGFMARKQRMEATVGFRVSENDGRRHVLTLSVGD 650

Query: 241  YKRRRGLL 218
            YKRRRGLL
Sbjct: 651  YKRRRGLL 658


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
            [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
            PREDICTED: RNA polymerase-associated protein RTF1 homolog
            isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  567 bits (1461), Expect = e-159
 Identities = 332/662 (50%), Positives = 415/662 (62%), Gaps = 6/662 (0%)
 Frame = -1

Query: 2185 DLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPSGS 2006
            +L +LLLEAAGRT + GRNR     S+R  +                   GY  RK SGS
Sbjct: 4    ELTDLLLEAAGRTNTGGRNRPPH-SSKRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGS 62

Query: 2005 QIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQMT 1826
            Q+PLKKRLDP ERDDD +                           LYKD+ DR++LAQMT
Sbjct: 63   QVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDDSIGSD----LYKDDDDRQKLAQMT 118

Query: 1825 ELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPVKETPTPXXXXXXXXXXXXXXXXXA 1646
            ELEREMIL+DRA ++ D+ L +++   ++    QP K++  P                  
Sbjct: 119  ELEREMILTDRAAKKSDRSLHDKMIKDRA----QPRKQSSPPSHSRGMRSSTRALDRAAD 174

Query: 1645 KDDALNELRAKRMKQQ-DPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXXXX 1469
            +DDALNE+RAKR +QQ DPEG  + RDAA +G                TAA         
Sbjct: 175  RDDALNEIRAKRARQQQDPEGQFKLRDAARKGS--GSRGYSPIKRRSFTAASLGSSPTRG 232

Query: 1468 XXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPFFEE 1292
                         + +D + +SD++KS P  +  T ED+K I+IRRSKLAKW +EPFF+E
Sbjct: 233  ESDSHSNEGDS--SADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDE 290

Query: 1291 VVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SEA 1118
            ++VGCFVR+GIG+ R    IYRLC V N+DASDP++QY LE K+T K+L+V++G   S A
Sbjct: 291  LIVGCFVRVGIGRSRSGP-IYRLCVVRNVDASDPNRQYKLENKTTSKFLNVVWGNENSAA 349

Query: 1117 RWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQM 938
            RWQM  +S++PPL  EF +WV+++E++G  MPSK +V EK+EAIQK+ T+VYSA TVKQM
Sbjct: 350  RWQMAMISDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQM 409

Query: 937  LHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAKA 764
            L +KK+A+ RPLNVAAEK RLRR++E A+ + D  E++RI+ARLQELE  +  +EKD KA
Sbjct: 410  LQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELEDSRKVQEKDDKA 469

Query: 763  VRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXX 584
             RL EMN++NR ENFKNASEL+PVN  LKAGEAGYDPFSRRWTRS NY+           
Sbjct: 470  RRLAEMNRKNRVENFKNASELRPVNQLLKAGEAGYDPFSRRWTRSTNYFAKGASNGEAAA 529

Query: 583  XXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSLHN 404
                        G G +AD                    GKLVDT+APVD GTESN+LH+
Sbjct: 530  AAALAAEDN--NGAGGTAD----GGMAATAAALQAAAGAGKLVDTNAPVDQGTESNTLHD 583

Query: 403  FELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRRRG 224
            F+L ISLA LQKFGG QG Q GFMARKQ IEATVGC VPENDGRRH LTLSVSDYKRRRG
Sbjct: 584  FDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDYKRRRG 643

Query: 223  LL 218
            LL
Sbjct: 644  LL 645


>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
            gi|548857220|gb|ERN15034.1| hypothetical protein
            AMTR_s00032p00242160 [Amborella trichopoda]
          Length = 624

 Score =  564 bits (1453), Expect = e-158
 Identities = 343/669 (51%), Positives = 414/669 (61%), Gaps = 13/669 (1%)
 Frame = -1

Query: 2185 DLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDH----GYVNRK 2018
            DLE+LLLEAAGRT +SGR + S+ Q +R+ EG                D     GY +RK
Sbjct: 5    DLEHLLLEAAGRTSTSGRKKPSQTQPKRRHEGSYSDDGSDPKYESEDDDDSDGPGYPSRK 64

Query: 2017 PSGSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQL 1838
            PSGSQ+PLKKR + +++DD R                            LYKDE DRE+L
Sbjct: 65   PSGSQVPLKKRFETADKDDMRGKGDRDGGSDDSDSGLSVGSD-------LYKDENDREEL 117

Query: 1837 AQMTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPV-KETPTPXXXXXXXXXXXXX 1661
            ++MTELEREMIL+DRA RRD+  L    +A++ G K +   KE   P             
Sbjct: 118  SRMTELEREMILTDRADRRDN--LMRMKKAERQGDKSRSTGKELMAPPQARGRSSAKSDR 175

Query: 1660 XXXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXX 1481
                   DAL EL AK          R+SR+ + R                  AA     
Sbjct: 176  MA---NKDALTELLAKMQ--------RKSRNRSER---------QDLMVVRNKAAAAASP 215

Query: 1480 XXXXXXXXXXXXXXXXSAGNDELGESDEEKSP--GKEALTLEDVKTITIRRSKLAKWLLE 1307
                               + ELGESDE++ P  G E  T ED+K ITIRRS+LAKW LE
Sbjct: 216  VSDSPPSSGVRSSSDGREVSVELGESDEDEGPTSGSEHPTFEDIKGITIRRSRLAKWFLE 275

Query: 1306 PFFEEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK 1127
            PFFEE +VGCFVR+GIG  R   SIYRLC V N+DASDPD+QY  E ++THKYL+ ++G 
Sbjct: 276  PFFEEAIVGCFVRVGIGTSRSGQSIYRLCMVRNVDASDPDRQYKFENRTTHKYLNCVWGS 335

Query: 1126 --SEARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQK-AITYVYSA 956
              S ARWQM R+S++ PLEKEF EWV+++E+ G  MP+K +V +K EAIQ+ + ++VYSA
Sbjct: 336  EASAARWQMARISDSAPLEKEFLEWVREVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSA 395

Query: 955  ATVKQMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELEKI---S 785
            ATVKQML EKK+AS+RP N+AAEK RLR+E+E A+SR D  E +R++ARLQELE +   S
Sbjct: 396  ATVKQMLQEKKSASTRPSNIAAEKDRLRKEMELAESRLDHAEAERVRARLQELENLSQQS 455

Query: 784  REKDAKAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXX 605
            ++KDAKAV L EMN+RNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYV   
Sbjct: 456  KKKDAKAVMLAEMNRRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKP 515

Query: 604  XXXXXXXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGT 425
                          A     L A+AD                    GKLVDT APVD GT
Sbjct: 516  EGGGEVVKEEAETAATKA-ALEAAADA-------------------GKLVDTKAPVDEGT 555

Query: 424  ESNSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVS 245
            ES+SLH+FEL ISLA LQ+FGGPQGAQL FMARKQ IEAT+G  VPENDGRRH LTLSVS
Sbjct: 556  ESHSLHDFELPISLAGLQRFGGPQGAQLAFMARKQRIEATIGVRVPENDGRRHSLTLSVS 615

Query: 244  DYKRRRGLL 218
            DYKRRRGL+
Sbjct: 616  DYKRRRGLV 624


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
            tuberosum]
          Length = 652

 Score =  563 bits (1450), Expect = e-157
 Identities = 331/667 (49%), Positives = 417/667 (62%), Gaps = 11/667 (1%)
 Frame = -1

Query: 2185 DLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPSGS 2006
            +L +LLLEAAGRT + GRNR  +  SRR  +                   GY  RK SGS
Sbjct: 4    ELTDLLLEAAGRTNTGGRNRPPQ-SSRRHHKSSYSDDGSDSRDDDSDDGRGYSGRKLSGS 62

Query: 2005 QIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQMT 1826
            Q+PLKKRLDP ERDDD +                           LYKD+ DR++LAQMT
Sbjct: 63   QVPLKKRLDPQERDDDHSSHGEGNDGDGYGNESDDDSIGSD----LYKDDDDRQKLAQMT 118

Query: 1825 ELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPVKETPTPXXXXXXXXXXXXXXXXXA 1646
            ELEREMIL+DRA ++ D+ L +++   ++    QP K++  P                  
Sbjct: 119  ELEREMILTDRAAKKSDRSLHDKMIKDRA----QPRKQSSPPSHSRGMRSSTRALDRAAD 174

Query: 1645 KDDALNELRAKRMKQQ-DPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXXXXX 1469
            +DDALNE+RAKR +QQ DPEG  + RDAA +G                TAA         
Sbjct: 175  RDDALNEIRAKRARQQQDPEGQFKLRDAARKGS--GGRGYSPIKRRSFTAATLGSSPTRG 232

Query: 1468 XXXXXXXXXXXXSAGNDELGESDEEKS-PGKEALTLEDVKTITIRRSKLAKWLLEPFFEE 1292
                         + +D + +SD++KS P  +  T ED+K I+IRRSKLAKW +EPFF+E
Sbjct: 233  ESDSHSNEGDS--SADDGMDDSDDDKSSPESQLPTFEDIKEISIRRSKLAKWFMEPFFDE 290

Query: 1291 VVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--SEA 1118
            ++VGCFVR+GIG+ R    IYRLC V N+D+SDP++QY LE K+T K+L+V++G   S A
Sbjct: 291  LIVGCFVRVGIGRSRSGP-IYRLCVVRNVDSSDPNRQYKLENKTTSKFLNVVWGNENSAA 349

Query: 1117 RWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVKQM 938
            RWQM  VS++PPL  EF +WV+++E++G  MPSK +V EK+EAIQK+ T+VYSA TVKQM
Sbjct: 350  RWQMAMVSDSPPLRDEFDQWVREVERSGGRMPSKQDVLEKKEAIQKSNTFVYSADTVKQM 409

Query: 937  LHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELE--KISREKDAKA 764
            L +KK+A+ RPLNVAAEK RLRR++E A+ + D  E++RI+ARLQEL+  +  +EKD KA
Sbjct: 410  LQQKKSATWRPLNVAAEKDRLRRDMEVAKMKNDEAEVERIKARLQELDDSRKVQEKDDKA 469

Query: 763  VRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXXXX 584
             RL EMN++NR ENFKNASEL+PVN  LKAG+AGYDPFSRRWTRS NY+           
Sbjct: 470  RRLAEMNRKNRVENFKNASELRPVNQLLKAGQAGYDPFSRRWTRSTNYFAKGANEEAEGA 529

Query: 583  XXXXXXXAPLVP-----GLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTES 419
                   A  +      G   +AD                    GKLVDT+APVD GTES
Sbjct: 530  SNGEVAAAAALAAEDNNGASGTAD----GGMAATAAALQAAAGAGKLVDTNAPVDQGTES 585

Query: 418  NSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDY 239
            N+LH+F+L ISLA LQKFGG QG Q GFMARKQ IEATVGC VPENDGRRH LTLSVSDY
Sbjct: 586  NTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRRHALTLSVSDY 645

Query: 238  KRRRGLL 218
            KRRRGLL
Sbjct: 646  KRRRGLL 652


>ref|NP_176299.1| Paf1C-like transcription factor [Arabidopsis thaliana]
            gi|12323334|gb|AAG51642.1|AC018908_8 unknown protein;
            78902-80833 [Arabidopsis thaliana]
            gi|332195649|gb|AEE33770.1| Paf1C-like transcription
            factor [Arabidopsis thaliana]
          Length = 643

 Score =  557 bits (1435), Expect = e-155
 Identities = 329/673 (48%), Positives = 415/673 (61%), Gaps = 15/673 (2%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            M DLENLLLEAAGRT S+GR+RH  P S R+REG                  GY +RKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSRH--PPSSRRREGSYSDGSSDSRDDSDED-RGYASRKPS 57

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRL+ +ER+D RA                          DLYK+E DR++LA 
Sbjct: 58   GSQVPLKKRLE-AERED-RAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 115

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPV--KETPTPXXXXXXXXXXXXXX 1658
            MTE +REMILS+RA ++ D+  TE++R+K+  +K  PV  KET                 
Sbjct: 116  MTEFQREMILSERADKKGDKNFTEKLRSKRESEKT-PVSKKETQPLPASRGVRSSARSAD 174

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
               AKDDALNELRAKRMKQQDP   R+ RDA+  G                 +       
Sbjct: 175  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGG-----------------SGSRDFSS 217

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKSPG---------KEALTLEDVKTITIRRSKL 1325
                            + +D   +SD+E S G          +  T EDVK +TIRRSKL
Sbjct: 218  TKRKPLASSNLSSSSQSDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKL 277

Query: 1324 AKWLLEPFFEEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYL 1145
            AKWL+EPFFEE++VGCFVR+GIG+ +    IYRLC V N+DA+DPDK Y LE K+THKYL
Sbjct: 278  AKWLMEPFFEELIVGCFVRVGIGRSKSGP-IYRLCWVKNVDATDPDKTYKLENKTTHKYL 336

Query: 1144 HVIFGK--SEARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAIT 971
            +V++G   S ARWQM  +S+  PLE+E+++W++++E+T   MP+K +++EK+EAIQ+  +
Sbjct: 337  NVVWGNETSAARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNS 396

Query: 970  YVYSAATVKQMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELEK 791
            +VYSA TVKQML EKK+AS RP+NVAAEK RLR+ELE AQS+ D   ++RI++++++L+ 
Sbjct: 397  FVYSAETVKQMLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA 456

Query: 790  ISREK--DAKAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYY 617
               +K  D KA++L EMNK+NRAENFKNASE+K +  SLKAGEAGYDPFSRRWTRS NYY
Sbjct: 457  SRNKKGVDKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYY 516

Query: 616  VXXXXXXXXXXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPV 437
                              A    G  A A V                   GKL+DT AP+
Sbjct: 517  NGKNKGKDGEENEAAVAAAVETNGADAGAGV------EATEAALEAAAEAGKLIDTRAPI 570

Query: 436  DLGTESNSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLT 257
              G E N LHNFELS+SL  LQK+GGPQG Q  FMARKQ  EATVGC V ENDG+RH LT
Sbjct: 571  GQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLT 630

Query: 256  LSVSDYKRRRGLL 218
            L+VSDYKRRRGLL
Sbjct: 631  LTVSDYKRRRGLL 643


>ref|XP_006300844.1| hypothetical protein CARUB_v10019938mg [Capsella rubella]
            gi|482569554|gb|EOA33742.1| hypothetical protein
            CARUB_v10019938mg [Capsella rubella]
          Length = 644

 Score =  556 bits (1432), Expect = e-155
 Identities = 325/664 (48%), Positives = 417/664 (62%), Gaps = 6/664 (0%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            M DLENLLLEAAGRT  +G++RHS P S R+REG                  G+ +RKPS
Sbjct: 1    MGDLENLLLEAAGRTNPAGKSRHSHPPSSRRREGSYSDGSSDSRDDSDDD-RGFASRKPS 59

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRL+ +ER+D RA                          DLYK+E DR++LA 
Sbjct: 60   GSQVPLKKRLE-AERED-RAARNESGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 117

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPV--KETPTPXXXXXXXXXXXXXX 1658
            MTE +REMIL++RA ++ D+  TE++R+K+  +K  PV  KET                 
Sbjct: 118  MTEFQREMILAERADKKGDKNFTEKLRSKRENEKT-PVSKKETQPLPASRGVRSSARSAD 176

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
               AKDDALNELRAKRMKQQDP   R+ RDA+  G               + ++      
Sbjct: 177  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGGS--GSRDFSSLKRKPLASSNLSNSS 234

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKSPGKEALTLEDVKTITIRRSKLAKWLLEPFF 1298
                           +AG D    SD+++S   +  T ED+K ITIRRSKLAKWL+EPFF
Sbjct: 235  QSDSDSRSQSDDEGSNAGLD----SDDDRS---DMPTFEDIKEITIRRSKLAKWLMEPFF 287

Query: 1297 EEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYLHVIFGK--S 1124
            EE++VGCFVR+GIG+ +    IYRLC V N+DA+DPDK Y LE K+THKYL+VI+G   S
Sbjct: 288  EELIVGCFVRVGIGRSKSGP-IYRLCMVRNVDATDPDKTYKLENKTTHKYLNVIWGNETS 346

Query: 1123 EARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAITYVYSAATVK 944
             ARWQM  +S+  PLE+E+++W++++E+T   MP+K +++EK+EAI++  +++YSA TVK
Sbjct: 347  AARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIKRINSFIYSAETVK 406

Query: 943  QMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELEKISREK--DA 770
            QML EKK+AS RP+NVAAEK RLR+ELE AQS+ D   ++RI+ ++++L+    +K  D 
Sbjct: 407  QMLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKTKIKQLDASRNKKGVDK 466

Query: 769  KAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVXXXXXXXX 590
            KA++L EMNK+NRAENFKNASE+K +  SLK GEAGYDPFSRRWTRS NYY         
Sbjct: 467  KALKLAEMNKKNRAENFKNASEVKSITASLKVGEAGYDPFSRRWTRSSNYYNGKNKGKEG 526

Query: 589  XXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPVDLGTESNSL 410
                     A    G+ A A V                   GKL+DT AP+  G E N L
Sbjct: 527  AENEAAVAAAVETNGVDAGAGV------EATEAALEAAAEAGKLIDTRAPIGQGAEHNQL 580

Query: 409  HNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLTLSVSDYKRR 230
            HNFELS+SLA LQK+GGPQG Q  FMARKQ  EATVGC V ENDG+RH LTL+VSDYKRR
Sbjct: 581  HNFELSVSLAALQKYGGPQGVQKAFMARKQVTEATVGCRVAENDGKRHGLTLTVSDYKRR 640

Query: 229  RGLL 218
            RGLL
Sbjct: 641  RGLL 644


>gb|AAM10312.1| At1g61040/T7P1_17 [Arabidopsis thaliana]
          Length = 643

 Score =  555 bits (1429), Expect = e-155
 Identities = 328/673 (48%), Positives = 414/673 (61%), Gaps = 15/673 (2%)
 Frame = -1

Query: 2191 MADLENLLLEAAGRTGSSGRNRHSRPQSRRQREGXXXXXXXXXXXXXXXXDHGYVNRKPS 2012
            M DLENLLLEAAGRT S+GR+ H  P S R+REG                  GY +RKPS
Sbjct: 1    MGDLENLLLEAAGRTNSAGRSSH--PPSSRRREGSYSDGSSDSRDDSDED-RGYASRKPS 57

Query: 2011 GSQIPLKKRLDPSERDDDRAXXXXXXXXXXXXXXXXXXXXXXXXXXDLYKDEYDREQLAQ 1832
            GSQ+PLKKRL+ +ER+D RA                          DLYK+E DR++LA 
Sbjct: 58   GSQVPLKKRLE-AERED-RAARVEGGYGDGPSDREGDSSEESDFGDDLYKNEEDRQKLAG 115

Query: 1831 MTELEREMILSDRAQRRDDQRLTERVRAKQSGKKDQPV--KETPTPXXXXXXXXXXXXXX 1658
            MTE +REMILS+RA ++ D+  TE++R+K+  +K  PV  KET                 
Sbjct: 116  MTEFQREMILSERADKKGDKNFTEKLRSKRESEKT-PVSKKETQPLPASRGVRSSARSAD 174

Query: 1657 XXXAKDDALNELRAKRMKQQDPEGYRRSRDAANRGGTYXXXXXXXXXXXXVTAAXXXXXX 1478
               AKDDALNELRAKRMKQQDP   R+ RDA+  G                 +       
Sbjct: 175  RAAAKDDALNELRAKRMKQQDPAALRKLRDASKGG-----------------SGSRDFSS 217

Query: 1477 XXXXXXXXXXXXXXXSAGNDELGESDEEKSPG---------KEALTLEDVKTITIRRSKL 1325
                            + +D   +SD+E S G          +  T EDVK +TIRRSKL
Sbjct: 218  TKRKPLASSNLSSSSQSDSDSRSQSDDEGSNGGMLDSDDDRSDVPTFEDVKEVTIRRSKL 277

Query: 1324 AKWLLEPFFEEVVVGCFVRLGIGKDRDDTSIYRLCKVLNIDASDPDKQYVLEGKSTHKYL 1145
            AKWL+EPFFEE++VGCFVR+GIG+ +    IYRLC V N+DA+DPDK Y LE K+THKYL
Sbjct: 278  AKWLMEPFFEELIVGCFVRVGIGRSKSGP-IYRLCWVKNVDATDPDKTYKLENKTTHKYL 336

Query: 1144 HVIFGK--SEARWQMDRVSNTPPLEKEFKEWVQQMEKTGAHMPSKNEVAEKQEAIQKAIT 971
            +V++G   S ARWQM  +S+  PLE+E+++W++++E+T   MP+K +++EK+EAIQ+  +
Sbjct: 337  NVVWGNETSAARWQMAMISDGHPLEEEYRQWIREVERTNGRMPTKQDISEKKEAIQRTNS 396

Query: 970  YVYSAATVKQMLHEKKTASSRPLNVAAEKARLRRELEKAQSRRDGPEIDRIQARLQELEK 791
            +VYSA TVKQML EKK+AS RP+NVAAEK RLR+ELE AQS+ D   ++RI++++++L+ 
Sbjct: 397  FVYSAETVKQMLQEKKSASVRPMNVAAEKDRLRKELEIAQSKNDEAGVERIKSKIKQLDA 456

Query: 790  ISREK--DAKAVRLEEMNKRNRAENFKNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYY 617
               +K  D KA++L EMNK+NRAENFKNASE+K +  SLKAGEAGYDPFSRRWTRS NYY
Sbjct: 457  SRNKKGVDKKALKLAEMNKKNRAENFKNASEVKSITASLKAGEAGYDPFSRRWTRSSNYY 516

Query: 616  VXXXXXXXXXXXXXXXXXAPLVPGLGASADVISXXXXXXXXXXXXXXXXXGKLVDTSAPV 437
                              A    G  A A V                   GKL+DT AP+
Sbjct: 517  NGKNKGKDGEENEAAVAAAVETNGADAGAGV------EATEAALEAAAEAGKLIDTRAPI 570

Query: 436  DLGTESNSLHNFELSISLAELQKFGGPQGAQLGFMARKQHIEATVGCCVPENDGRRHPLT 257
              G E N LHNFELS+SL  LQK+GGPQG Q  FMARKQ  EATVGC V ENDG+RH LT
Sbjct: 571  GQGAEHNQLHNFELSLSLTALQKYGGPQGVQKAFMARKQLTEATVGCRVAENDGKRHGLT 630

Query: 256  LSVSDYKRRRGLL 218
            L+VSDYKRRRGLL
Sbjct: 631  LTVSDYKRRRGLL 643