BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00012634
         (564 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273931.1| PREDICTED: transcription initiation factor T...    60   4e-07
ref|XP_002299587.2| TATA BINDING protein ASSOCIATED FACTOR 21KDA...    58   1e-06
gb|ABK94051.1| unknown [Populus trichocarpa]                           58   1e-06

>ref|XP_002273931.1| PREDICTED: transcription initiation factor TFIID subunit 9B [Vitis
           vinifera] gi|297742999|emb|CBI35866.3| unnamed protein
           product [Vitis vinifera]
          Length = 177

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 35/66 (53%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
 Frame = +2

Query: 2   PPEEDTLISPNYQLAIP-KRTHQAIXXXXXXXXGANP-NPSXXXXXXXXXXXXXRVSFPL 175
           PPE+DTLISPNYQLAIP KRT QA+        GA+P + S             RVSFP+
Sbjct: 112 PPEQDTLISPNYQLAIPKKRTAQAVEETEEDEEGADPSHASQEGRTDLPQHTPQRVSFPI 171

Query: 176 AAKRPR 193
            AKRPR
Sbjct: 172 GAKRPR 177


>ref|XP_002299587.2| TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT [Populus
           trichocarpa] gi|550347503|gb|EEE84392.2| TATA BINDING
           protein ASSOCIATED FACTOR 21KDA SUBUNIT [Populus
           trichocarpa]
          Length = 175

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 35/65 (53%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   PPEEDTLISPNYQLAIP-KRTHQAIXXXXXXXXGANPNPSXXXXXXXXXXXXXRVSFPLA 178
           PPE+DTLISPNYQLAIP KRT QAI         A+PN S             RVSFPL 
Sbjct: 112 PPEQDTLISPNYQLAIPKKRTAQAIEETEEDEDSADPNQSQEQKTDPPQLTPQRVSFPL- 170

Query: 179 AKRPR 193
            KRP+
Sbjct: 171 TKRPK 175


>gb|ABK94051.1| unknown [Populus trichocarpa]
          Length = 175

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 35/65 (53%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +2

Query: 2   PPEEDTLISPNYQLAIP-KRTHQAIXXXXXXXXGANPNPSXXXXXXXXXXXXXRVSFPLA 178
           PPE+DTLISPNYQLAIP KRT QAI         A+PN S             RVSFPL 
Sbjct: 112 PPEQDTLISPNYQLAIPKKRTAQAIEETEEDEESADPNQSQEQKTDPPQLTPQRVSFPL- 170

Query: 179 AKRPR 193
            KRP+
Sbjct: 171 TKRPK 175