BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00012395
         (744 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citr...   291   1e-76
ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV a...   290   4e-76
ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D sub...   289   6e-76
gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bu...   289   8e-76
gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus n...   286   4e-75
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              286   5e-75
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   286   5e-75
ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV a...   282   8e-74
ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D sub...   281   2e-73
ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D sub...   280   3e-73
ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D sub...   280   4e-73
ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   278   2e-72
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   278   2e-72
ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prun...   277   2e-72
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...   277   3e-72
ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theob...   276   7e-72
ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theob...   276   7e-72
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   273   5e-71
ref|XP_002324332.2| DNA-directed RNA polymerase family protein [...   273   6e-71
ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phas...   272   1e-70

>ref|XP_006442883.1| hypothetical protein CICLE_v10018562mg [Citrus clementina]
           gi|568850178|ref|XP_006478802.1| PREDICTED: DNA-directed
           RNA polymerases IV and V subunit 2-like [Citrus
           sinensis] gi|557545145|gb|ESR56123.1| hypothetical
           protein CICLE_v10018562mg [Citrus clementina]
          Length = 1198

 Score =  291 bits (746), Expect = 1e-76
 Identities = 136/247 (55%), Positives = 187/247 (75%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           TQ+ ++SDKFKTG+EQY+ KE++++E+ D++IG+IPVMV+S+LCWM+  EK DC+FDHGG
Sbjct: 160 TQKRVTSDKFKTGREQYIQKEVLSDEATDIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGG 219

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+IKG EKVF+AQEQICLKRLWVS+   WT+AY+SE +R RL V++      +     +
Sbjct: 220 YFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 279

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           KV++V+FLS  IP+WIL FALG+SSDKEIV++ID    + S +N+L ++I++AD  C+ F
Sbjct: 280 KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 339

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+   ALKY++   K   FPP E   +C++ YL P L G +QKA FLGYMVK LL +  G
Sbjct: 340 RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSG 399

Query: 22  QRKCDNR 2
           +RKCDNR
Sbjct: 400 RRKCDNR 406


>ref|XP_006364477.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1219

 Score =  290 bits (742), Expect = 4e-76
 Identities = 134/247 (54%), Positives = 189/247 (76%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++L+ SDKFKTG EQ++ KE V E+ +DV IG+IPVMV S LCWM  +++ DC+FDHGG
Sbjct: 183 TKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCDFDHGG 242

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF++KG EK+FIAQEQICLKRLWVS+   W +AYRS  +R R+Y+K+      +      
Sbjct: 243 YFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEA 302

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K ++V+FL+  +P+W+L FALG+SSD+EIVD+ID+D+ + + +N+L+++I++AD+ CE F
Sbjct: 303 KALSVYFLA-EMPIWVLFFALGVSSDREIVDLIDVDIKDTNIINILVASIHDADKNCEDF 361

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+  KAL Y++   K+ KFPP+E + +C+ +YL P L GL+QKA FLGYMVK LLLS IG
Sbjct: 362 RKGKKALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIG 421

Query: 22  QRKCDNR 2
           +RK DNR
Sbjct: 422 RRKVDNR 428


>ref|XP_004245914.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Solanum
           lycopersicum]
          Length = 1219

 Score =  289 bits (740), Expect = 6e-76
 Identities = 133/247 (53%), Positives = 190/247 (76%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++L+ SDKFKTG EQ++ KE V E+ +DV IG+IPVMV S LCWM  +++ DCEFDHGG
Sbjct: 183 TKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRLDCEFDHGG 242

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF++KG EK+FIAQEQ+CLKRLWVS+   W +AYRS  +R R+Y+K+      ++     
Sbjct: 243 YFIVKGAEKIFIAQEQMCLKRLWVSNHYTWMVAYRSGEKRNRVYLKLTETLKHEQIKGEA 302

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K ++V+FL+  +P+W+L FALG+SSD+E+VD+ID+D+ +N  +N+L+++I++AD+ CE F
Sbjct: 303 KSLSVYFLA-EMPIWVLFFALGVSSDREVVDLIDVDIKDNKIINILVASIHDADKNCEDF 361

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+  +AL Y++   K+ KFPP+E + +C+ +YL P L GL+QKA FLGYMVK LLLS IG
Sbjct: 362 RKGKRALAYVDRLIKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIG 421

Query: 22  QRKCDNR 2
           +RK DNR
Sbjct: 422 RRKVDNR 428


>gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score =  289 bits (739), Expect = 8e-76
 Identities = 133/247 (53%), Positives = 188/247 (76%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++L+ SDKFKTG EQ++ KE V E+ +DV IG+IPVMV S LCWM  +++ DCEFDHGG
Sbjct: 185 TKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCEFDHGG 244

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF++KG EK+FIAQEQICLKRLWVS+   W +AYRS  +R R+Y+K+      +      
Sbjct: 245 YFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEHIKGEA 304

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K ++V+F +  +P+W+L FALG+SSD+E+VD+ID+D+ + + +N+L+++I++AD+ CE F
Sbjct: 305 KALSVYFFA-EMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADKNCEDF 363

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+  KAL Y++   K+ KFPP+E + +C+ +YL P L GL+QKA FLGYMVK LLLS IG
Sbjct: 364 RKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLLLSYIG 423

Query: 22  QRKCDNR 2
           +RK DNR
Sbjct: 424 RRKVDNR 430


>gb|EXB86677.1| DNA-directed RNA polymerase D subunit 2a [Morus notabilis]
          Length = 1196

 Score =  286 bits (733), Expect = 4e-75
 Identities = 138/247 (55%), Positives = 182/247 (73%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           TQ+L+ SDKFKTGKEQ+L KEI++ E KDV+IG+IPVMV+S+LCWM+++EK DC FDHGG
Sbjct: 162 TQKLVRSDKFKTGKEQFLDKEIISTEDKDVMIGRIPVMVKSDLCWMKDAEKGDCYFDHGG 221

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+IKG EK FIAQEQIC KRLW++     T+AY+SE +R RL +++     E    + +
Sbjct: 222 YFIIKGAEKTFIAQEQICRKRLWITSHQNLTVAYQSEVKRNRLILRLAQSGLEDTTVE-K 280

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
            V+ V+FLS  IP+WIL FALG+SSDKE+VD+ID    + S +N+L  +I  +DEVC GF
Sbjct: 281 DVLCVYFLSTEIPVWILFFALGVSSDKEVVDLIDFPTDDASILNILFPSIQISDEVCAGF 340

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           RR  KAL ++E   K  +FPP E   +CLD +L P L G+ QKA FLGYMVK LL +  G
Sbjct: 341 RRQKKALGFVEKHIKKTQFPPRESAEECLDMFLFPNLRGMLQKARFLGYMVKCLLQAFTG 400

Query: 22  QRKCDNR 2
           +RKC+N+
Sbjct: 401 RRKCNNK 407


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  286 bits (732), Expect = 5e-75
 Identities = 136/252 (53%), Positives = 187/252 (74%), Gaps = 5/252 (1%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKE-QYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHG 566
           TQ+L+ SDK+KTGK+ +Y+ K+++ E+++D+LIG+IPVMV+S LCWM   E+ DCE+DHG
Sbjct: 197 TQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHG 256

Query: 565 GYFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQI 386
           GYF+IKG EK FIAQEQICLKRLWVS  P W +AYR  ++R+R+YVK+E P+ E      
Sbjct: 257 GYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGG- 315

Query: 385 QKVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEG 206
           +KV+ V+F S  IP+WIL FALG SSDKE+VD+ID ++ +    N+L+++I+EAD   E 
Sbjct: 316 EKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEK 375

Query: 205 ----FRRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLL 38
               FRR G A+ +++   K+ KFPP E + +C+ KYL P   G++QKA FLGYMVK LL
Sbjct: 376 KGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLL 435

Query: 37  LSSIGQRKCDNR 2
            +  G+RKCDNR
Sbjct: 436 QAYTGRRKCDNR 447


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  286 bits (732), Expect = 5e-75
 Identities = 136/252 (53%), Positives = 187/252 (74%), Gaps = 5/252 (1%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKE-QYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHG 566
           TQ+L+ SDK+KTGK+ +Y+ K+++ E+++D+LIG+IPVMV+S LCWM   E+ DCE+DHG
Sbjct: 161 TQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHG 220

Query: 565 GYFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQI 386
           GYF+IKG EK FIAQEQICLKRLWVS  P W +AYR  ++R+R+YVK+E P+ E      
Sbjct: 221 GYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGG- 279

Query: 385 QKVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEG 206
           +KV+ V+F S  IP+WIL FALG SSDKE+VD+ID ++ +    N+L+++I+EAD   E 
Sbjct: 280 EKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEK 339

Query: 205 ----FRRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLL 38
               FRR G A+ +++   K+ KFPP E + +C+ KYL P   G++QKA FLGYMVK LL
Sbjct: 340 KGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLL 399

Query: 37  LSSIGQRKCDNR 2
            +  G+RKCDNR
Sbjct: 400 QAYTGRRKCDNR 411


>ref|XP_006351506.1| PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like
           [Solanum tuberosum]
          Length = 1217

 Score =  282 bits (722), Expect = 8e-74
 Identities = 131/247 (53%), Positives = 185/247 (74%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++L+ SDKFKTG +Q++ KE   E+ +DVLIG+IPVMV S LCWM   +K DCEFDHGG
Sbjct: 185 TKKLVRSDKFKTGVDQFVDKECEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGG 244

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF++KG EK FIAQEQ+CLKRLWVS+ P W + YR   +R+R+Y+K+      +     +
Sbjct: 245 YFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGE 304

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K ++V+ L+  +P+W+L FALG+SSD+E+V++ID+D+ + + VN+L+++I+EAD+ CE F
Sbjct: 305 KALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDF 363

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+  KAL Y++   KN KFPP+E + +C++ YL P L G +QKA FLGYMVK LL S IG
Sbjct: 364 RKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIG 423

Query: 22  QRKCDNR 2
           +RK DNR
Sbjct: 424 RRKVDNR 430


>ref|XP_004288915.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Fragaria
           vesca subsp. vesca]
          Length = 1201

 Score =  281 bits (718), Expect = 2e-73
 Identities = 133/247 (53%), Positives = 179/247 (72%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           TQ L+ SDKFKTG EQ L K  ++ +S+D++IG+IPVMV+SNLCWM+  EK DCEFD GG
Sbjct: 168 TQNLVESDKFKTGTEQLLEKTTLSTDSRDIIIGRIPVMVKSNLCWMKGVEKGDCEFDQGG 227

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+I G EK FIAQEQ CLKRL +++    T+AYRSE +R RL +++      +    ++
Sbjct: 228 YFIINGAEKTFIAQEQSCLKRLLITNSQGLTVAYRSEVKRHRLIIRLSGISKLENVEGVE 287

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           KV++V+F+S  IP+WI  FALG+SSDKE++D+ID  + + S  N+L ++I +ADE  + F
Sbjct: 288 KVLSVYFMSTEIPVWIWFFALGVSSDKEVIDLIDYGIEDASISNILFASIRDADERKDDF 347

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           RR   AL+Y+EN  K+  FPP E + DC+  YL P + GL+QKA FLGYMVK LL +SIG
Sbjct: 348 RRGNNALRYVENAIKSTTFPPGESVEDCISMYLFPNMRGLKQKARFLGYMVKCLLQTSIG 407

Query: 22  QRKCDNR 2
            RKCDNR
Sbjct: 408 LRKCDNR 414


>ref|XP_004501385.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cicer
           arietinum]
          Length = 1199

 Score =  280 bits (717), Expect = 3e-73
 Identities = 130/241 (53%), Positives = 178/241 (73%)
 Frame = -3

Query: 724 SDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGGYFVIKG 545
           SDKFKTGKE+Y+ +EI+ +E++++ IG++PVMV+S+LCWM   EK DCEFDHGGYF+IKG
Sbjct: 173 SDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGDCEFDHGGYFLIKG 232

Query: 544 TEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQKVINVH 365
            EK+FIAQEQI LKRLWV++ P W +AY+S+ +R R+ VK+      +     +KV+ V+
Sbjct: 233 AEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTVEGIKNGEKVLTVY 292

Query: 364 FLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGFRRDGKA 185
           FLS  IP+W+L FALG++SDK+IVD+ID   G+    N+L ++I EADE CE FRR   A
Sbjct: 293 FLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREADEKCEQFRRGKNA 352

Query: 184 LKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIGQRKCDN 5
           L YIE   K ++FPP E + +CL+ Y+ P + GL +KA +L YMVK LLL+  G+RK DN
Sbjct: 353 LLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKVLLLAYTGRRKTDN 412

Query: 4   R 2
           R
Sbjct: 413 R 413


>ref|XP_004236361.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a [Solanum
           lycopersicum]
          Length = 1217

 Score =  280 bits (716), Expect = 4e-73
 Identities = 130/247 (52%), Positives = 185/247 (74%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++L+ SDKFKTG ++++ KE   E+ +DVLIG+IPVMV S LCWM   +K DCEFDHGG
Sbjct: 185 TKKLVRSDKFKTGVDRFVDKEWEVEDKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGG 244

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF++KG EK FIAQEQ+CLKRLWVS+ P W + YR   +R+R+Y+K+      +     +
Sbjct: 245 YFIVKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGE 304

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K ++V+ L+  +P+W+L FALG+SSD+E+V++ID+D+ + + VN+L+++I+EAD+ CE F
Sbjct: 305 KALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDF 363

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+  KAL Y++   KN KFPP+E + +C++ YL P L G +QKA FLGYMVK LL S IG
Sbjct: 364 RKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIG 423

Query: 22  QRKCDNR 2
           +RK DNR
Sbjct: 424 RRKVDNR 430


>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  278 bits (710), Expect = 2e-72
 Identities = 132/251 (52%), Positives = 183/251 (72%), Gaps = 4/251 (1%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVN--EESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDH 569
           TQ+L+SSDKFKTGK+QY+ KE V    +++DV IG++PVMV S+LCWM++ +K DCEFD 
Sbjct: 162 TQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDR 221

Query: 568 GGYFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQ 389
           GGYF+IKG EK+FIAQEQICL+RLW+S+   WT+AYRSE +R RL +++      +    
Sbjct: 222 GGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKS 281

Query: 388 IQKVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEA--DEV 215
            +KV+NV+FLS  +P+WIL FALG+SSDKEIVD+ID    + + +N+L +++ E   D+ 
Sbjct: 282 KEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDK 341

Query: 214 CEGFRRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLL 35
            + FRR  +AL +++NE +   FPP + + DCL+ YL   L G +QK  FLGYMVK LL 
Sbjct: 342 WKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQ 401

Query: 34  SSIGQRKCDNR 2
           +  G+RKCDNR
Sbjct: 402 AYTGRRKCDNR 412


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1197

 Score =  278 bits (710), Expect = 2e-72
 Identities = 132/251 (52%), Positives = 183/251 (72%), Gaps = 4/251 (1%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVN--EESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDH 569
           TQ+L+SSDKFKTGK+QY+ KE V    +++DV IG++PVMV S+LCWM++ +K DCEFD 
Sbjct: 162 TQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDR 221

Query: 568 GGYFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQ 389
           GGYF+IKG EK+FIAQEQICL+RLW+S+   WT+AYRSE +R RL +++      +    
Sbjct: 222 GGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSEDLKS 281

Query: 388 IQKVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEA--DEV 215
            +KV+NV+FLS  +P+WIL FALG+SSDKEIVD+ID    + + +N+L +++ E   D+ 
Sbjct: 282 KEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASVREVDNDDK 341

Query: 214 CEGFRRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLL 35
            + FRR  +AL +++NE +   FPP + + DCL+ YL   L G +QK  FLGYMVK LL 
Sbjct: 342 WKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLGYMVKCLLQ 401

Query: 34  SSIGQRKCDNR 2
           +  G+RKCDNR
Sbjct: 402 AYTGRRKCDNR 412


>ref|XP_007225442.1| hypothetical protein PRUPE_ppa000410mg [Prunus persica]
           gi|462422378|gb|EMJ26641.1| hypothetical protein
           PRUPE_ppa000410mg [Prunus persica]
          Length = 1200

 Score =  277 bits (709), Expect = 2e-72
 Identities = 130/251 (51%), Positives = 185/251 (73%), Gaps = 4/251 (1%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           TQ+L+SSDKFKTGK QYL K+I++ +++D++IG +PVMV+S+LCWM++ EK DC+FDHGG
Sbjct: 165 TQKLVSSDKFKTGKSQYLDKQILSTDTRDIIIGSVPVMVKSDLCWMKDFEKGDCDFDHGG 224

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+IKG EK FIAQEQ CLKRL +++    T+AYRSE +R RL +++      +    ++
Sbjct: 225 YFIIKGAEKTFIAQEQSCLKRLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIEGVE 284

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCE-- 209
           KV+ V+F+S  IP+WI  FALG+SSD+E++++ID D  + S  N+L ++I +AD++ +  
Sbjct: 285 KVLTVYFMSTEIPVWIWFFALGVSSDREVMNLIDYDSEDASISNILFASIRDADKLNDKV 344

Query: 208 --GFRRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLL 35
             GFRR   ALKY++   +   FPP E + +C+  YL P L GL+QKA FLGYMVKSLL 
Sbjct: 345 DGGFRRGKNALKYVDEVIRKTAFPPGESMEECISLYLFPNLKGLKQKARFLGYMVKSLLQ 404

Query: 34  SSIGQRKCDNR 2
           +  G+RKCDNR
Sbjct: 405 AYAGRRKCDNR 415


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score =  277 bits (708), Expect = 3e-72
 Identities = 130/247 (52%), Positives = 183/247 (74%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++L+ SDKFKTG ++++ KE   E  +DVLIG+IPVMV S LCWM   +K DCEFDHGG
Sbjct: 179 TKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGG 238

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+ KG EK FIAQEQ+CLKRLWVS+ P W + YR   +R+R+Y+K+      +     +
Sbjct: 239 YFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGE 298

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K ++V+ L+  +P+W+L FALG+SSD+E+V++ID+D+ + + VN+L+++I+EAD+ CE F
Sbjct: 299 KALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDF 357

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           R+  KAL Y++   KN KFPP+E + +C++ YL P L G +QKA FLGYMVK LL S IG
Sbjct: 358 RKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIG 417

Query: 22  QRKCDNR 2
           +RK DNR
Sbjct: 418 RRKVDNR 424


>ref|XP_007011719.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
           gi|508782082|gb|EOY29338.1| DNA-directed RNA polymerase
           isoform 3 [Theobroma cacao]
          Length = 1073

 Score =  276 bits (705), Expect = 7e-72
 Identities = 128/247 (51%), Positives = 180/247 (72%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T + + SDKFKTG+E+++ +E+V ++++D++IG+IPVMVRS+LCWM E EK DC+FDHGG
Sbjct: 150 TAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCDFDHGG 209

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+IKGTEK+FIAQEQI +KRLW+S+   WTIAYRSE +R RL +++      +     +
Sbjct: 210 YFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVEYIKGGE 269

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           KV+ V+FLS  IP+W+L FALG+SSDKE+V++ID +  ++S  N+L ++I  AD  C  F
Sbjct: 270 KVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKF 329

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
            +   A+ Y+    K+ +FPPEE + +CL  YL P L   +QKA FLGYMVK LL +  G
Sbjct: 330 CQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTG 389

Query: 22  QRKCDNR 2
           + KCDNR
Sbjct: 390 RLKCDNR 396


>ref|XP_007011717.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
           gi|508782080|gb|EOY29336.1| DNA-directed RNA polymerase
           isoform 1 [Theobroma cacao]
          Length = 1184

 Score =  276 bits (705), Expect = 7e-72
 Identities = 128/247 (51%), Positives = 180/247 (72%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T + + SDKFKTG+E+++ +E+V ++++D++IG+IPVMVRS+LCWM E EK DC+FDHGG
Sbjct: 150 TAKSVKSDKFKTGREEFVEEEVVYQDNRDIIIGRIPVMVRSDLCWMNEVEKADCDFDHGG 209

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+IKGTEK+FIAQEQI +KRLW+S+   WTIAYRSE +R RL +++      +     +
Sbjct: 210 YFLIKGTEKIFIAQEQISMKRLWISNSQGWTIAYRSEVKRNRLIIRLVENSKVEYIKGGE 269

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           KV+ V+FLS  IP+W+L FALG+SSDKE+V++ID +  ++S  N+L ++I  AD  C  F
Sbjct: 270 KVLTVYFLSTEIPVWVLFFALGVSSDKEVVNLIDYESNDSSITNILFASIRNADGKCYKF 329

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
            +   A+ Y+    K+ +FPPEE + +CL  YL P L   +QKA FLGYMVK LL +  G
Sbjct: 330 CQGRNAIDYVGKLVKDTRFPPEEGIEECLSTYLFPTLRSFKQKARFLGYMVKCLLQAYTG 389

Query: 22  QRKCDNR 2
           + KCDNR
Sbjct: 390 RLKCDNR 396


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
           gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
           subunit, putative [Ricinus communis]
          Length = 1203

 Score =  273 bits (698), Expect = 5e-71
 Identities = 134/252 (53%), Positives = 184/252 (73%), Gaps = 6/252 (2%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           T++++ SDKFKTGK+QY+ KE++N +++++ IG +PVMV+S+LCWM+ +EK DC+FDHGG
Sbjct: 170 TRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGG 229

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVK------IEAPEAEK 401
           YF+IKG EKVFIAQEQICLKRLW+S+   WT++Y+SE +R RL V+      +E  +AEK
Sbjct: 230 YFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEK 289

Query: 400 KCPQIQKVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEAD 221
           KC      + V+FLS  IPLWIL FALG++SDKE++D+I     +   VN+  ++I++AD
Sbjct: 290 KC------LTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDAD 343

Query: 220 EVCEGFRRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSL 41
           E  EGFRR  +AL+Y+  + +  +FPP E   D    YL P L  LRQKA FLGYMVK L
Sbjct: 344 EKTEGFRRGKEALEYVVRQIRGTRFPPGE-NEDFFLLYLFPTLHSLRQKARFLGYMVKCL 402

Query: 40  LLSSIGQRKCDN 5
           L +  GQRKC+N
Sbjct: 403 LQAYNGQRKCNN 414


>ref|XP_002324332.2| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|550317882|gb|EEF02897.2| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 1181

 Score =  273 bits (697), Expect = 6e-71
 Identities = 128/247 (51%), Positives = 177/247 (71%)
 Frame = -3

Query: 742 TQQLMSSDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGG 563
           TQ +  SDKFKTG ++ + K +V+ E+++++IG+IPVMV+S+LCW+   EK DC+FDHGG
Sbjct: 158 TQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDFDHGG 217

Query: 562 YFVIKGTEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQ 383
           YF+IKG EKVFIAQEQIC+KRLW+S+   WT++Y+SE +R RL V++      +     +
Sbjct: 218 YFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEK 277

Query: 382 KVINVHFLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGF 203
           K + V+FLS  IPLWIL FALG+ SDKE++D+ID    + S VN+  ++I++ADE CE F
Sbjct: 278 KGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEKCEHF 337

Query: 202 RRDGKALKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIG 23
           RR+ +AL Y++   K  +FPP+E + D +  YL P L   R KA FLGYMVK LL +  G
Sbjct: 338 RREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTG 397

Query: 22  QRKCDNR 2
            RKCDNR
Sbjct: 398 HRKCDNR 404


>ref|XP_007136942.1| hypothetical protein PHAVU_009G087100g [Phaseolus vulgaris]
           gi|561010029|gb|ESW08936.1| hypothetical protein
           PHAVU_009G087100g [Phaseolus vulgaris]
          Length = 1202

 Score =  272 bits (695), Expect = 1e-70
 Identities = 124/241 (51%), Positives = 177/241 (73%)
 Frame = -3

Query: 724 SDKFKTGKEQYLHKEIVNEESKDVLIGKIPVMVRSNLCWMEESEKNDCEFDHGGYFVIKG 545
           SDKFKTGKE+YL KEI+ E+ ++++IG++PVMV+S+LCWM   EK+DCEFDHGGYF+IKG
Sbjct: 173 SDKFKTGKEEYLDKEILKEDEREMIIGRLPVMVKSDLCWMN-GEKDDCEFDHGGYFLIKG 231

Query: 544 TEKVFIAQEQICLKRLWVSDKPCWTIAYRSEFRRRRLYVKIEAPEAEKKCPQIQKVINVH 365
            EK FIAQEQ+ LKRLWV + P W IAY+S+ +R R+ +K+      ++       + V+
Sbjct: 232 AEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSRNEEGQNGDMFLTVY 291

Query: 364 FLSCRIPLWILLFALGMSSDKEIVDMIDIDMGNNSFVNLLLSTINEADEVCEGFRRDGKA 185
           FLS  +P+W+L FALG++SDK++VD+I  D  +    N+LL+++ +ADE C  FRR   A
Sbjct: 292 FLSVEVPVWVLFFALGVTSDKDVVDLIGCDNDDARIQNILLASVCDADEKCGAFRRGRNA 351

Query: 184 LKYIENEFKNLKFPPEECLSDCLDKYLLPFLVGLRQKAIFLGYMVKSLLLSSIGQRKCDN 5
           ++Y+E   K+++FPP E + +CL+ Y+ P + GL +KA FL YMVK LLL+  G+RKCDN
Sbjct: 352 VQYLEKYIKSVQFPPPESIEECLEMYVFPGISGLNRKARFLAYMVKGLLLAYTGRRKCDN 411

Query: 4   R 2
           R
Sbjct: 412 R 412