BLASTX nr result
ID: Cocculus22_contig00012389
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00012389
(960 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCG14716.1| ORF V protein [Strawberry vein banding virus] 161 8e-47
ref|NP_043933.1| hypothetical protein [Strawberry vein banding v... 160 7e-46
gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus] 147 4e-43
gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus] 147 1e-42
gb|ABW80581.1| polyprotein [Dahlia mosaic virus] 145 4e-42
gb|AEA39176.1| polyprotein [Dahlia mosaic virus] 144 9e-42
gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10] 144 1e-41
gb|ADZ44590.1| polyprotein [Dahlia mosaic virus] 141 4e-41
ref|YP_001931961.1| replicase [Lamium leaf distortion virus] gi|... 137 6e-40
gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus] 137 8e-40
gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland] 137 8e-40
ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57... 132 2e-39
ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]... 139 2e-39
ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic prote... 139 2e-39
ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus] g... 134 5e-39
ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia fl... 131 3e-38
dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus] 128 7e-38
dbj|BAO53624.1| reverse transcriptase [Cauliflower mosaic virus] 128 7e-38
dbj|BAO53617.1| reverse transcriptase [Cauliflower mosaic virus] 128 7e-38
dbj|BAO53463.1| reverse transcriptase [Cauliflower mosaic virus] 128 7e-38
>emb|CCG14716.1| ORF V protein [Strawberry vein banding virus]
Length = 699
Score = 161 bits (408), Expect(2) = 8e-47
Identities = 80/123 (65%), Positives = 96/123 (78%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
+ D+E VRKIK V +LP+LYNP PED IIE DASD +WG VLKAK P + + +CRYA
Sbjct: 542 EKDTETVRKIKSLVKSLPDLYNPSPEDKPIIECDASDDHWGAVLKAKLP-EGKEVICRYA 600
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SGTFK AEKNYHSNEKEIL++I+ IKAF+AY+LP KF RTDN N YF++T I GDYKQ
Sbjct: 601 SGTFKPAEKNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQ 660
Query: 598 ADL 590
+ L
Sbjct: 661 SRL 663
Score = 53.5 bits (127), Expect(2) = 8e-47
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -2
Query: 596 RFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDFAG 489
R VRWQ L+ Y F+IEH+ G NVLAD+M+R+FAG
Sbjct: 662 RLVRWQMALREYSFDIEHVSGQKNVLADIMTREFAG 697
>ref|NP_043933.1| hypothetical protein [Strawberry vein banding virus]
gi|1360613|emb|CAA65970.1| ORF V [Strawberry vein
banding virus]
Length = 708
Score = 160 bits (406), Expect(2) = 7e-46
Identities = 79/123 (64%), Positives = 95/123 (77%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
+ D+E VRKIK V LP+LYNP PED IIE DASD +WG +LKAK P + + +CRYA
Sbjct: 551 EKDTETVRKIKSLVKTLPDLYNPSPEDKPIIECDASDDHWGAILKAKLP-EGKEVICRYA 609
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SGTFK AEKNYHSNEKEIL++I+ IKAF+AY+LP KF RTDN N YF++T I GDYKQ
Sbjct: 610 SGTFKPAEKNYHSNEKEILSIIKAIKAFRAYILPYKFLVRTDNTNAAYFVRTNIAGDYKQ 669
Query: 598 ADL 590
+ L
Sbjct: 670 SRL 672
Score = 51.2 bits (121), Expect(2) = 7e-46
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = -2
Query: 596 RFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDFAG 489
R VRWQ L+ Y F+IEH+ G NVLAD+M+R+ AG
Sbjct: 671 RLVRWQMALREYSFDIEHVSGQKNVLADIMTRELAG 706
>gb|AGQ49469.1| reverse transcriptase [Dahlia mosaic virus]
Length = 814
Score = 147 bits (372), Expect(2) = 4e-43
Identities = 72/123 (58%), Positives = 91/123 (73%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D+ ++KIKK +T+ P+LY P E++LIIE+DAS+ +WGGVLKAK K + +CRY
Sbjct: 660 QSDTNYIKKIKKNLTSFPKLYLPKEEEFLIIETDASNDFWGGVLKAKTADK--EEVCRYT 717
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SG+FK AEKNYHSNEKE+LA+ TI F YL P+KF RTDN N YFLKT+I GD KQ
Sbjct: 718 SGSFKTAEKNYHSNEKELLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQ 777
Query: 598 ADL 590
L
Sbjct: 778 GRL 780
Score = 55.1 bits (131), Expect(2) = 4e-43
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR VRWQ W Y F+IEH++G+ NVLAD ++RDF
Sbjct: 778 GRLVRWQMWFSRYSFDIEHLEGSKNVLADCLTRDF 812
>gb|AGT41978.1| reverse transcriptase [Dahlia mosaic virus]
Length = 825
Score = 147 bits (370), Expect(2) = 1e-42
Identities = 71/123 (57%), Positives = 90/123 (73%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D+ V+KIKK +T+ P+LY P ED+LIIE+ AS+ +WGGVLK K T + +C+Y
Sbjct: 667 QSDTNYVKKIKKNLTSFPKLYLPNKEDFLIIETGASNEFWGGVLKVK--TAETEEICKYT 724
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SG+FK AEKNYHSNEKE+LA+ TI F YL+P+KF RTDN N YFLKT+I GD KQ
Sbjct: 725 SGSFKTAEKNYHSNEKELLAVKNTISKFSIYLIPVKFLVRTDNRNFTYFLKTKISGDNKQ 784
Query: 598 ADL 590
L
Sbjct: 785 GRL 787
Score = 54.3 bits (129), Expect(2) = 1e-42
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR VRWQ W Y F+IEH++G NVLAD ++RDF
Sbjct: 785 GRLVRWQMWFSRYSFDIEHLEGPKNVLADFLTRDF 819
>gb|ABW80581.1| polyprotein [Dahlia mosaic virus]
Length = 812
Score = 145 bits (365), Expect(2) = 4e-42
Identities = 70/123 (56%), Positives = 91/123 (73%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D+ ++KIKK +T+ P+LY P +++LIIE+DAS+ +WGGVLKAK K + +CRY
Sbjct: 658 QSDTNYIKKIKKNLTSFPKLYLPKEKEFLIIETDASNDFWGGVLKAKTADK--EEVCRYT 715
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SG+FK AE+NYHSNEKE+LA+ TI F YL P+KF RTDN N YFLKT+I GD KQ
Sbjct: 716 SGSFKTAERNYHSNEKELLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQ 775
Query: 598 ADL 590
L
Sbjct: 776 GRL 778
Score = 54.3 bits (129), Expect(2) = 4e-42
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR VRWQ W Y F+IEH++G+ NVLAD + RDF
Sbjct: 776 GRLVRWQMWFSRYSFDIEHLEGSKNVLADCLPRDF 810
>gb|AEA39176.1| polyprotein [Dahlia mosaic virus]
Length = 808
Score = 144 bits (362), Expect(2) = 9e-42
Identities = 70/123 (56%), Positives = 90/123 (73%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D+ ++KIKK + + P+LY P +++LIIE+DAS+ +WGGVLKAK K + +CRY
Sbjct: 654 QSDTNYIKKIKKNLISFPKLYLPKEKEFLIIETDASNDFWGGVLKAKTADK--EEVCRYT 711
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SG+FK AEKNYHSNEKE+LA+ TI F YL P+KF RTDN N YFLKT+I GD KQ
Sbjct: 712 SGSFKTAEKNYHSNEKELLAVKNTISKFSIYLTPVKFLVRTDNKNFTYFLKTKISGDNKQ 771
Query: 598 ADL 590
L
Sbjct: 772 GRL 774
Score = 54.3 bits (129), Expect(2) = 9e-42
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR VRWQ W Y F+IEH++G NVLAD ++RDF
Sbjct: 772 GRLVRWQMWFSRYSFDIEHLEGPKNVLADCLTRDF 806
>gb|AEB54984.1| polyprotein [Dahlia mosaic virus D10]
Length = 810
Score = 144 bits (362), Expect(2) = 1e-41
Identities = 70/123 (56%), Positives = 90/123 (73%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D+ ++KIKK +T+ P+LY P +++LIIE+DAS+ YWGGVLKAK K + +CRY
Sbjct: 656 QSDTSYIKKIKKNLTSFPKLYLPKEKEFLIIETDASNDYWGGVLKAKTAEK--EEVCRYT 713
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SG+FK AEKNYHSNEKE+LA+ I F YL P+KF RTD+ N YFLKT+I GD KQ
Sbjct: 714 SGSFKTAEKNYHSNEKELLAVKNAISKFSIYLTPVKFLVRTDSKNFTYFLKTKISGDNKQ 773
Query: 598 ADL 590
L
Sbjct: 774 GRL 776
Score = 53.9 bits (128), Expect(2) = 1e-41
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR VRWQ W Y F+IEH++G NVLAD ++RDF
Sbjct: 774 GRLVRWQMWFSRYTFDIEHLEGLKNVLADCLTRDF 808
>gb|ADZ44590.1| polyprotein [Dahlia mosaic virus]
Length = 806
Score = 141 bits (355), Expect(2) = 4e-41
Identities = 69/123 (56%), Positives = 89/123 (72%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D+ ++KIKK +T+ P+LY P +++ IIE+DAS+ +WGGVLKAK K +CRY
Sbjct: 652 QSDTNYIKKIKKNLTSFPKLYLPKEKEFPIIETDASNDFWGGVLKAKTADKEA--VCRYT 709
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQ 599
SG+FK AEKNYHSNEK++LA+ TI F YL P+KF RTDN N YFLKT+I GD KQ
Sbjct: 710 SGSFKTAEKNYHSNEKKLLAVKNTISKFSIYLTPVKFLVRTDNRNFTYFLKTKISGDNKQ 769
Query: 598 ADL 590
L
Sbjct: 770 GRL 772
Score = 54.7 bits (130), Expect(2) = 4e-41
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ W Y F+IEH++G+ NVLAD ++RDF
Sbjct: 770 GRLIRWQMWFSRYSFDIEHLEGSKNVLADCLTRDF 804
>ref|YP_001931961.1| replicase [Lamium leaf distortion virus]
gi|172041757|gb|ACB69767.1| replicase [Lamium leaf
distortion virus]
Length = 696
Score = 137 bits (345), Expect(2) = 6e-40
Identities = 65/122 (53%), Positives = 89/122 (72%)
Frame = -3
Query: 955 TDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYAS 776
+D+E V +IKK +T+ P+L++P ++ LIIE DAS YWGG+LKA + ++ + +CRY S
Sbjct: 537 SDTEYVEEIKKSLTDFPKLHHPATDEKLIIECDASGKYWGGILKAIHQSE--ERICRYTS 594
Query: 775 GTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQA 596
G+FK AE NYHSNEKEILA+IR I F YL P++F RTDN N +F+ T ++GDYKQ
Sbjct: 595 GSFKKAELNYHSNEKEILAVIRVIAKFTIYLTPLEFLIRTDNKNFTFFMNTNVKGDYKQG 654
Query: 595 DL 590
L
Sbjct: 655 RL 656
Score = 54.7 bits (130), Expect(2) = 6e-40
Identities = 21/42 (50%), Positives = 28/42 (66%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDFAGHE*VE 474
GR VRWQQWL Y F++EHI G N+ AD ++R+F +E
Sbjct: 654 GRLVRWQQWLSRYSFKVEHITGVKNIFADFLTREFQSKNSIE 695
>gb|AEL30041.1| polymerase polyprotein [Dahlia common mosaic virus]
Length = 673
Score = 137 bits (346), Expect(2) = 8e-40
Identities = 70/124 (56%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D++ V+KIKK + N P+LY P ED LIIE+DASD +WGGVLKA+ T+ + +CRY+
Sbjct: 513 QSDTDYVKKIKKGLVNFPKLYLPKKEDSLIIETDASDHFWGGVLKAQT-TEGNELICRYS 571
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNIN-VRYFLKTEIRGDYK 602
SGTFK AE NYHSNEKE+LA+ + I F YL P+ FT RTDN+N ++ F+ T+I GD K
Sbjct: 572 SGTFKPAELNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSK 631
Query: 601 QADL 590
Q L
Sbjct: 632 QGRL 635
Score = 53.9 bits (128), Expect(2) = 8e-40
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ WL HY F + H+KG NVLAD ++R++
Sbjct: 633 GRLIRWQMWLSHYTFNVNHLKGEKNVLADYLTREY 667
>gb|ABW81763.1| reverse transcriptase [Dahlia mosaic virus-Holland]
Length = 673
Score = 137 bits (346), Expect(2) = 8e-40
Identities = 70/124 (56%), Positives = 92/124 (74%), Gaps = 1/124 (0%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D++ V+KIKK + N P+LY P ED LIIE+DASD +WGGVLKA+ T+ + +CRY+
Sbjct: 513 QSDTDYVKKIKKGLVNFPKLYLPKKEDSLIIETDASDHFWGGVLKAQT-TEGNELICRYS 571
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNIN-VRYFLKTEIRGDYK 602
SGTFK AE NYHSNEKE+LA+ + I F YL P+ FT RTDN+N ++ F+ T+I GD K
Sbjct: 572 SGTFKPAELNYHSNEKELLAVKQVITKFSIYLTPVTFTVRTDNVNLLKRFMNTKITGDSK 631
Query: 601 QADL 590
Q L
Sbjct: 632 QGRL 635
Score = 53.9 bits (128), Expect(2) = 8e-40
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ WL HY F + H+KG NVLAD ++R++
Sbjct: 633 GRLIRWQMWLSHYTFNVNHLKGEKNVLADYLTREY 667
>ref|YP_006907834.1| polyprotein [Horseradish latent virus] gi|57790326|gb|AAW56089.1|
polyprotein [Horseradish latent virus]
Length = 679
Score = 132 bits (333), Expect(2) = 2e-39
Identities = 62/121 (51%), Positives = 88/121 (72%), Gaps = 4/121 (3%)
Frame = -3
Query: 952 DSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKA----KNPTKTVKHLCR 785
D+ ++K+KK + P L++P PE+ LIIE+DASD YWGG+LKA + ++++ +CR
Sbjct: 520 DTLYMKKVKKNLNGFPPLHHPLPEEKLIIETDASDNYWGGILKAIHIDLSTNESIELVCR 579
Query: 784 YASGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDY 605
YASG+FK AE+NYHSN+KE LA+IRTI+ F YL P++F RTDN + +YFL +GD
Sbjct: 580 YASGSFKPAEQNYHSNDKETLAVIRTIQKFSIYLTPVRFLVRTDNTHFKYFLNINYKGDS 639
Query: 604 K 602
K
Sbjct: 640 K 640
Score = 57.8 bits (138), Expect(2) = 2e-39
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDFAG 489
GR +RWQ WLQ+Y F+++HIKGT N LAD +SR+F G
Sbjct: 642 GRNIRWQGWLQNYVFDVDHIKGTNNCLADFLSREFNG 678
>ref|YP_006607892.1| reverse transcriptase [Soybean Putnam virus]
gi|401620160|gb|AFP95350.1| reverse transcriptase
[Soybean Putnam virus]
Length = 699
Score = 139 bits (350), Expect(2) = 2e-39
Identities = 67/121 (55%), Positives = 84/121 (69%)
Frame = -3
Query: 952 DSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYASG 773
D + KIKK + + P LY+P D LIIE+DAS +WGG+LKA+ + +CRY SG
Sbjct: 545 DINYMSKIKKNLKSFPTLYHPKLTDTLIIETDASGSFWGGILKARTENSDSELICRYTSG 604
Query: 772 TFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQAD 593
+FKAAE NYHSNEKEILA++ TIK F YL P+KF RTDN N +FLK ++GDYKQ
Sbjct: 605 SFKAAELNYHSNEKEILAVMNTIKKFTGYLTPVKFLIRTDNKNFTHFLKINLKGDYKQGR 664
Query: 592 L 590
L
Sbjct: 665 L 665
Score = 50.8 bits (120), Expect(2) = 2e-39
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR VRWQ W Y FE+EH+ G NV AD ++R+F
Sbjct: 663 GRLVRWQMWFSRYVFEVEHLSGDKNVFADFLTREF 697
>ref|NP_612577.1| Enzymatic polyprotein [Contains: Aspartic protease; Endonuclease;
Reverse transcriptase] [Carnation etched ring virus]
gi|130593|sp|P05400.1|POL_CERV RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58863|emb|CAA28360.1|
unnamed protein product [Carnation etched ring virus]
gi|225356|prf||1301227E ORF 5
Length = 659
Score = 139 bits (351), Expect(2) = 2e-39
Identities = 66/122 (54%), Positives = 91/122 (74%)
Frame = -3
Query: 955 TDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYAS 776
TDS+ + KIKK + + P+LY+P P D L+IE+DAS+ +WGG+LKA + + +++CRYAS
Sbjct: 503 TDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSH--EYICRYAS 560
Query: 775 GTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQA 596
G+FKAAE+NYHSNEKE+LA+IR IK F YL P +F RTDN N +F+ ++GD KQ
Sbjct: 561 GSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLIRTDNKNFTHFVNINLKGDRKQG 620
Query: 595 DL 590
L
Sbjct: 621 RL 622
Score = 50.4 bits (119), Expect(2) = 2e-39
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRD 498
GR VRWQ WL Y+F++EHI GT NV AD + +
Sbjct: 620 GRLVRWQMWLSQYDFDVEHIAGTKNVFADFLQEN 653
>ref|NP_659397.1| hypothetical protein [Mirabilis mosaic virus]
gi|21427196|gb|AAM53128.1| ORFV [Mirabilis mosaic virus]
Length = 674
Score = 134 bits (337), Expect(2) = 5e-39
Identities = 69/124 (55%), Positives = 91/124 (73%), Gaps = 1/124 (0%)
Frame = -3
Query: 958 QTDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYA 779
Q+D++ V+KIKK + N P+LY P ED LIIE+DASD +WGGVLKA+ T+ + +CRY+
Sbjct: 511 QSDTDYVKKIKKGLINFPKLYLPKKEDSLIIETDASDHFWGGVLKAQT-TEGEELICRYS 569
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNIN-VRYFLKTEIRGDYK 602
SGTFK AE NYHSNEKE+LA+ + I F YL P+ FT RTDN+N ++ F+ +I GD K
Sbjct: 570 SGTFKPAELNYHSNEKELLAVKQVITKFSIYLTPVCFTVRTDNVNLLKGFMNKKITGDSK 629
Query: 601 QADL 590
Q L
Sbjct: 630 QGRL 633
Score = 54.7 bits (130), Expect(2) = 5e-39
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ W HY F+++H+KG NVLAD ++R+F
Sbjct: 631 GRLIRWQMWFSHYTFKVDHLKGEQNVLADYLTREF 665
>ref|YP_002519387.1| putative enzymatic polyprotein [Rudbeckia flower distortion virus]
gi|219815610|gb|ACL36982.1| putative enzymatic
polyprotein [Rudbeckia flower distortion virus]
Length = 701
Score = 131 bits (330), Expect(2) = 3e-38
Identities = 64/122 (52%), Positives = 86/122 (70%)
Frame = -3
Query: 955 TDSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAKNPTKTVKHLCRYAS 776
+D++ V K K+ + P+L++P P++YLIIE+DAS +W GVLK++ T ++ LCRY S
Sbjct: 544 SDTQYVEKFKRNLKEFPKLHHPLPDEYLIIETDASHEHWAGVLKSRG-TDNLERLCRYTS 602
Query: 775 GTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYKQA 596
G+FK AE NYHSNEKE+LA+ RTI FK YL +F RTDN YFL+T I+ DYKQ
Sbjct: 603 GSFKPAEINYHSNEKEVLAVKRTITKFKGYLASSEFLVRTDNKYFTYFLRTSIKDDYKQG 662
Query: 595 DL 590
L
Sbjct: 663 RL 664
Score = 55.1 bits (131), Expect(2) = 3e-38
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDFA 492
GR +RWQQW HY+F +EH+ GT N AD ++R+FA
Sbjct: 662 GRLIRWQQWFSHYKFNVEHLAGTHNFTADSLTREFA 697
>dbj|BAO53680.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 128 bits (322), Expect(2) = 7e-38
Identities = 63/119 (52%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Frame = -3
Query: 952 DSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAK--NPTKTVKHLCRYA 779
D+ ++K+KK + P L++P PE+ LIIE+DASD YWGG+LKA N + + +CRYA
Sbjct: 515 DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIQINESANTELICRYA 574
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYK 602
SG+FKAAEKNYHSN+KE LA+I TIK F YL P+ F RTDN + + F+ +GD K
Sbjct: 575 SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633
Score = 56.6 bits (135), Expect(2) = 7e-38
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ WL HY F++EHIKGT N AD +SR+F
Sbjct: 635 GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 669
>dbj|BAO53624.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 128 bits (322), Expect(2) = 7e-38
Identities = 63/119 (52%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Frame = -3
Query: 952 DSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAK--NPTKTVKHLCRYA 779
D+ ++K+KK + P L++P PE+ LIIE+DASD YWGG+LKA N + + +CRYA
Sbjct: 515 DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINESTNTELICRYA 574
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYK 602
SG+FKAAEKNYHSN+KE LA+I TIK F YL P+ F RTDN + + F+ +GD K
Sbjct: 575 SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633
Score = 56.6 bits (135), Expect(2) = 7e-38
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ WL HY F++EHIKGT N AD +SR+F
Sbjct: 635 GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 669
>dbj|BAO53617.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 128 bits (322), Expect(2) = 7e-38
Identities = 63/119 (52%), Positives = 84/119 (70%), Gaps = 2/119 (1%)
Frame = -3
Query: 952 DSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAK--NPTKTVKHLCRYA 779
D+ ++K+KK + P L++P PE+ LIIE+DASD YWGG+LKA N + + +CRYA
Sbjct: 515 DTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINESTNTELICRYA 574
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYK 602
SG+FKAAEKNYHSN+KE LA+I TIK F YL P+ F RTDN + + F+ +GD K
Sbjct: 575 SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633
Score = 56.6 bits (135), Expect(2) = 7e-38
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ WL HY F++EHIKGT N AD +SR+F
Sbjct: 635 GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 669
>dbj|BAO53463.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 128 bits (322), Expect(2) = 7e-38
Identities = 64/119 (53%), Positives = 83/119 (69%), Gaps = 2/119 (1%)
Frame = -3
Query: 952 DSEIVRKIKKQVTNLPELYNPGPEDYLIIESDASDLYWGGVLKAK--NPTKTVKHLCRYA 779
DS ++K+KK + P L++P PE+ LIIE+DASD YWGG+LKA N + +CRYA
Sbjct: 515 DSLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYA 574
Query: 778 SGTFKAAEKNYHSNEKEILALIRTIKAFKAYLLPIKFTARTDNINVRYFLKTEIRGDYK 602
SG+FKAAEKNYHSN+KE LA+I TIK F YL P+ F RTDN + + F+ +GD K
Sbjct: 575 SGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSK 633
Score = 56.6 bits (135), Expect(2) = 7e-38
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = -2
Query: 599 GRFVRWQQWLQHYEFEIEHIKGTTNVLADVMSRDF 495
GR +RWQ WL HY F++EHIKGT N AD +SR+F
Sbjct: 635 GRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSREF 669