BLASTX nr result
ID: Cocculus22_contig00011960
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00011960
(410 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arab... 78 1e-12
gb|EXC41712.1| hypothetical protein L484_000599 [Morus notabilis] 75 1e-11
ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabi... 75 1e-11
gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis th... 75 1e-11
ref|XP_006478051.1| PREDICTED: KRR1 small subunit processome com... 75 1e-11
ref|XP_006441061.1| hypothetical protein CICLE_v10020638mg [Citr... 75 1e-11
ref|XP_006287914.1| hypothetical protein CARUB_v10001149mg [Caps... 74 3e-11
ref|XP_002310107.1| hypothetical protein POPTR_0007s08410g [Popu... 73 4e-11
ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putativ... 73 5e-11
ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group] g... 72 6e-11
gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indi... 72 6e-11
gb|ABG66110.1| Ribosomal RNA assembly protein mis3, putative, ex... 72 6e-11
ref|XP_007015208.1| RNA-binding KH domain-containing protein [Th... 72 8e-11
emb|CBI22501.3| unnamed protein product [Vitis vinifera] 72 8e-11
ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mi... 72 8e-11
ref|XP_006664759.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small s... 71 2e-10
ref|XP_006846118.1| hypothetical protein AMTR_s00012p00142410 [A... 71 2e-10
ref|XP_004969735.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small s... 71 2e-10
tpg|DAA57892.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea m... 71 2e-10
tpg|DAA57891.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea m... 71 2e-10
>ref|XP_002871325.1| hypothetical protein ARALYDRAFT_487679 [Arabidopsis lyrata subsp.
lyrata] gi|297317162|gb|EFH47584.1| hypothetical protein
ARALYDRAFT_487679 [Arabidopsis lyrata subsp. lyrata]
Length = 391
Score = 78.2 bits (191), Expect = 1e-12
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC+QNK HP+YHIKTLM+K+ELEK P LAN+SWDRFLP
Sbjct: 204 IVEDCVQNKMHPVYHIKTLMMKKELEKDPALANESWDRFLP 244
>gb|EXC41712.1| hypothetical protein L484_000599 [Morus notabilis]
Length = 367
Score = 75.1 bits (183), Expect = 1e-11
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDCIQNK HP+YHIK LM+K+ELEK P LAN++WDRFLP
Sbjct: 186 IVEDCIQNKMHPVYHIKILMMKKELEKDPALANENWDRFLP 226
>ref|NP_196459.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|13878039|gb|AAK44097.1|AF370282_1 putative rev
interacting protein mis3 [Arabidopsis thaliana]
gi|10178284|emb|CAC08342.1| rev interacting protein
mis3-like [Arabidopsis thaliana]
gi|23296614|gb|AAN13132.1| putative rev interacting
protein mis3 [Arabidopsis thaliana]
gi|332003916|gb|AED91299.1| RNA-binding KH
domain-containing protein [Arabidopsis thaliana]
Length = 391
Score = 75.1 bits (183), Expect = 1e-11
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC+QN HP+YHIKTLM+K+ELEK P LAN+SWDRFLP
Sbjct: 204 IVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLP 244
>gb|AAM64563.1| rev interacting protein mis3-like [Arabidopsis thaliana]
Length = 391
Score = 75.1 bits (183), Expect = 1e-11
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC+QN HP+YHIKTLM+K+ELEK P LAN+SWDRFLP
Sbjct: 204 IVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLP 244
>ref|XP_006478051.1| PREDICTED: KRR1 small subunit processome component homolog [Citrus
sinensis]
Length = 376
Score = 74.7 bits (182), Expect = 1e-11
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC+QNK HP+YHIK LM+K+ELEK P LAN++WDRFLP
Sbjct: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
>ref|XP_006441061.1| hypothetical protein CICLE_v10020638mg [Citrus clementina]
gi|557543323|gb|ESR54301.1| hypothetical protein
CICLE_v10020638mg [Citrus clementina]
Length = 376
Score = 74.7 bits (182), Expect = 1e-11
Identities = 31/41 (75%), Positives = 37/41 (90%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC+QNK HP+YHIK LM+K+ELEK P LAN++WDRFLP
Sbjct: 197 IVEDCMQNKMHPVYHIKILMVKKELEKDPALANENWDRFLP 237
>ref|XP_006287914.1| hypothetical protein CARUB_v10001149mg [Capsella rubella]
gi|482556620|gb|EOA20812.1| hypothetical protein
CARUB_v10001149mg [Capsella rubella]
Length = 390
Score = 73.6 bits (179), Expect = 3e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC+QNK HP+YHIK LMIK+EL+K P LA +SWDRFLP
Sbjct: 207 IVEDCVQNKMHPVYHIKELMIKKELQKDPALATESWDRFLP 247
>ref|XP_002310107.1| hypothetical protein POPTR_0007s08410g [Populus trichocarpa]
gi|222853010|gb|EEE90557.1| hypothetical protein
POPTR_0007s08410g [Populus trichocarpa]
Length = 379
Score = 73.2 bits (178), Expect = 4e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDCIQNK HP+YHIK LM+K+ELEK P L N++WDRFLP
Sbjct: 203 IVEDCIQNKMHPVYHIKILMMKKELEKDPALKNENWDRFLP 243
>ref|XP_002513405.1| Ribosomal RNA assembly protein mis3, putative [Ricinus communis]
gi|223547313|gb|EEF48808.1| Ribosomal RNA assembly
protein mis3, putative [Ricinus communis]
Length = 377
Score = 72.8 bits (177), Expect = 5e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDCIQNK HP+YHIK LM+K+ELEK P L N++WDRFLP
Sbjct: 195 IVEDCIQNKLHPVYHIKILMMKKELEKDPALQNENWDRFLP 235
>ref|NP_001064737.1| Os10g0452800 [Oryza sativa Japonica Group]
gi|31432429|gb|AAP54059.1| Ribosomal RNA assembly
protein mis3, putative, expressed [Oryza sativa Japonica
Group] gi|113639346|dbj|BAF26651.1| Os10g0452800 [Oryza
sativa Japonica Group] gi|215687236|dbj|BAG91801.1|
unnamed protein product [Oryza sativa Japonica Group]
gi|222612935|gb|EEE51067.1| hypothetical protein
OsJ_31745 [Oryza sativa Japonica Group]
Length = 395
Score = 72.4 bits (176), Expect = 6e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
+VEDCI+N KHP+YHIK L+IKREL K P LAN+SWDRFLP
Sbjct: 210 VVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLP 250
>gb|EEC67082.1| hypothetical protein OsI_33853 [Oryza sativa Indica Group]
Length = 395
Score = 72.4 bits (176), Expect = 6e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
+VEDCI+N KHP+YHIK L+IKREL K P LAN+SWDRFLP
Sbjct: 210 VVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLP 250
>gb|ABG66110.1| Ribosomal RNA assembly protein mis3, putative, expressed [Oryza
sativa Japonica Group]
Length = 292
Score = 72.4 bits (176), Expect = 6e-11
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
+VEDCI+N KHP+YHIK L+IKREL K P LAN+SWDRFLP
Sbjct: 107 VVEDCIKNIKHPVYHIKELLIKRELAKNPALANESWDRFLP 147
>ref|XP_007015208.1| RNA-binding KH domain-containing protein [Theobroma cacao]
gi|508785571|gb|EOY32827.1| RNA-binding KH
domain-containing protein [Theobroma cacao]
Length = 445
Score = 72.0 bits (175), Expect = 8e-11
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDCI+NK HP+YHIK LM+K+ELEK P L N++WDRFLP
Sbjct: 262 IVEDCIENKMHPVYHIKILMMKKELEKDPTLKNENWDRFLP 302
>emb|CBI22501.3| unnamed protein product [Vitis vinifera]
Length = 424
Score = 72.0 bits (175), Expect = 8e-11
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
+VEDCIQNK HP+YHIKTLM+KREL P L N++WDRFLP
Sbjct: 239 VVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLP 279
>ref|XP_002271394.1| PREDICTED: ribosomal RNA assembly protein mis3-like [Vitis
vinifera]
Length = 386
Score = 72.0 bits (175), Expect = 8e-11
Identities = 30/41 (73%), Positives = 35/41 (85%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
+VEDCIQNK HP+YHIKTLM+KREL P L N++WDRFLP
Sbjct: 201 VVEDCIQNKMHPVYHIKTLMMKRELASDPALENENWDRFLP 241
>ref|XP_006664759.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Oryza brachyantha]
Length = 416
Score = 70.9 bits (172), Expect = 2e-10
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
+VEDCI+N KHP+YHIK L+IKREL K P LA++SWDRFLP
Sbjct: 231 VVEDCIKNVKHPVYHIKELLIKRELAKNPALAHESWDRFLP 271
>ref|XP_006846118.1| hypothetical protein AMTR_s00012p00142410 [Amborella trichopoda]
gi|548848888|gb|ERN07793.1| hypothetical protein
AMTR_s00012p00142410 [Amborella trichopoda]
Length = 297
Score = 70.9 bits (172), Expect = 2e-10
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDCI N HPIYHIKTLMIKREL K PELAN++WDRFLP
Sbjct: 206 IVEDCIHNI-HPIYHIKTLMIKRELAKNPELANENWDRFLP 245
>ref|XP_004969735.1| PREDICTED: LOW QUALITY PROTEIN: KRR1 small subunit processome
component homolog [Setaria italica]
Length = 398
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDCI+N KHP+YHIK L+IKREL K P LA +SWDRFLP
Sbjct: 214 IVEDCIKNVKHPVYHIKELLIKRELAKNPALATESWDRFLP 254
>tpg|DAA57892.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 391
Score = 70.9 bits (172), Expect = 2e-10
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC++N KHP+YHIK L+IKREL K P LAN++WDRFLP
Sbjct: 206 IVEDCMKNVKHPVYHIKELLIKRELAKNPALANENWDRFLP 246
>tpg|DAA57891.1| TPA: hypothetical protein ZEAMMB73_637093 [Zea mays]
Length = 294
Score = 70.9 bits (172), Expect = 2e-10
Identities = 30/41 (73%), Positives = 36/41 (87%)
Frame = -2
Query: 409 IVEDCIQNKKHPIYHIKTLMIKRELEKVPELANQSWDRFLP 287
IVEDC++N KHP+YHIK L+IKREL K P LAN++WDRFLP
Sbjct: 109 IVEDCMKNVKHPVYHIKELLIKRELAKNPALANENWDRFLP 149