BLASTX nr result
ID: Cocculus22_contig00011179
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00011179
(620 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vul... 68 1e-18
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 64 2e-15
gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subc... 65 1e-13
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 59 2e-13
emb|CAE03833.3| OSJNBb0013J13.10 [Oryza sativa Japonica Group] 56 5e-13
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 54 3e-12
emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera] 77 3e-12
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 54 7e-12
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g... 54 7e-12
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 61 2e-11
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote... 52 2e-11
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g... 49 2e-11
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 49 3e-10
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 69 9e-10
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 68 2e-09
gb|AAK29467.1| polyprotein-like [Solanum chilense] 49 3e-09
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 66 7e-09
emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera] 66 7e-09
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 45 9e-09
emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa Japonica Group] 42 2e-08
>gb|AAR13295.1| retrovirus-related pol polyprotein [Phaseolus vulgaris]
Length = 324
Score = 68.2 bits (165), Expect(3) = 1e-18
Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Frame = -1
Query: 308 GKQDRKSTGKGGASRRWRPKER-ECYFCGEKGHMIRNCPK----KGVP--ATTVESKPIV 150
G+Q + +G + R + EC FC EKGH ++CPK + VP A E K V
Sbjct: 186 GQQSQTKERRGMCKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDV 245
Query: 149 DAEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYKPAGGNI 9
+++ ++S+ D+ WILDS C++H+CP ++WF ++ G +
Sbjct: 246 ESDISLIVSLSASSYPDE-WILDSGCTYHMCPIRDWFFEFQELDGGV 291
Score = 38.9 bits (89), Expect(3) = 1e-18
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = -2
Query: 502 SVVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALV 329
+++L+ S+ HL T+L+G+D +S + V SAL S + + ++KST +ALV
Sbjct: 125 ALMLVSSLPDEFEHLETTLLHGKDNVSLDVVCSALYSHELRKQDKMKTKSTTSEEALV 182
Score = 32.3 bits (72), Expect(3) = 1e-18
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 615 LYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
L+ F + G +M+AH +L A L +D++ DED AL
Sbjct: 87 LFRFDYQQGTTMNAHITMFNQLVAYLLNLDVKFEDEDLAL 126
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 64.3 bits (155), Expect(3) = 2e-15
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 25/129 (19%)
Frame = -1
Query: 314 VRGKQDRKST-----GKGGASRRWRPKER----ECYFCGEKGHMIRNCPK---------- 192
VRG+Q +K+T K +S R R K R C +C GH I C K
Sbjct: 144 VRGRQQKKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRK 203
Query: 191 ---KGVPATTVESKPIVD--AEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYK 27
KG ++ + D ++A+ +++ + D+WILD+AC++H+CP+++WF +Y+
Sbjct: 204 YIPKGKKEEEGKAAIVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYE 263
Query: 26 PA-GGNIFM 3
GG + M
Sbjct: 264 AVQGGTVLM 272
Score = 37.7 bits (86), Expect(3) = 2e-15
Identities = 17/57 (29%), Positives = 35/57 (61%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALV 329
++LLCS+ S++ + +T+LY RD ++ ++V AL + +K+ S +++ LV
Sbjct: 87 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHTKEKMKKMVPSEGSNSQAEGLV 143
Score = 26.2 bits (56), Expect(3) = 2e-15
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+L+ K + S+ H +A +++ ADL +++++ +ED L
Sbjct: 47 KLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGL 87
>gb|ABA97308.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 407
Score = 65.1 bits (157), Expect(2) = 1e-13
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
Frame = -1
Query: 344 IASTCSHREQVRGKQDRKSTGKGG-----------ASRRWRPKERECYFCGEKGHMIRNC 198
I S R+Q+R ++ +++ G + + K +C+ C E GH+ R C
Sbjct: 161 ITSALLARDQMRKNKEGETSQAEGLLVKEDHAGHKVKKNKKKKMVQCFRCDEWGHISREC 220
Query: 197 P--KKGVPATTVESKPIVDAEADFVLSMQDKEISD-DRWILDSACSHHICPHKEWFTSYK 27
P K A TV S D++ +L+M + D + WILDSA S H+ P KEWF+SYK
Sbjct: 221 PTLKGKAKANTVTSSNDSDSDGCDLLTMSSAQSKDAEAWILDSASSFHVTPRKEWFSSYK 280
Score = 37.4 bits (85), Expect(2) = 1e-13
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKALFFYVRCTQLI-HISSILCY 442
+LY K + G + H +L DL +D+++ DEDKA+ F + H+ + L Y
Sbjct: 92 KLYGLKMQEGADLTVHVNVFNQLVTDLVKMDVEVDDEDKAIVFLCSLPESYEHVVTTLTY 151
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 59.3 bits (142), Expect(3) = 2e-13
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Frame = -1
Query: 317 QVRGKQDRK----STGKGGASRRWRPKERE---CYFCGEKGHMIRNCPKKGVPATTVESK 159
QVRG+ +++ S + R R K R C +C +K H I C K + K
Sbjct: 203 QVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----LQNKEK 257
Query: 158 PIVDAEADFVLSMQDKEISD------------DRWILDSACSHHICPHKEWFTSYK 27
D +A V S ++ + D D WILD+ACS HIC +++WF+SYK
Sbjct: 258 RKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICINRDWFSSYK 313
Score = 33.5 bits (75), Expect(3) = 2e-13
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQAL 332
++LLCS+ S++ + +T+L RD+++ +V AL + +K+ S+ + +AL
Sbjct: 147 LLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNREKMKGMVQSYASSSKGEAL 202
Score = 28.1 bits (61), Expect(3) = 2e-13
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+L++ K S+ H + +++ ADL ++++Q DED L
Sbjct: 107 KLFSHKLHESGSVLNHISVFKEIVADLVSMEVQFDDEDLGL 147
>emb|CAE03833.3| OSJNBb0013J13.10 [Oryza sativa Japonica Group]
Length = 500
Score = 56.2 bits (134), Expect(3) = 5e-13
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Frame = -1
Query: 323 REQVRGKQDRKSTGKGGASRRWRPKERECYFCGEKGHMIRNCPK---KGVPATTVESKPI 153
+ Q RG+ KSTGK + C +C +K H I C K K + ++ +
Sbjct: 164 KSQSRGRS--KSTGK-----------KFCKYCKKKNHFIEECWKLQNKDNRKSDGKASVV 210
Query: 152 VDAE----ADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYK 27
AE D ++ S D WILD+ACS HIC +++WF+SYK
Sbjct: 211 TSAENSNSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYK 256
Score = 35.4 bits (80), Expect(3) = 5e-13
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALV 329
++LLCS+ S++ + +T+L RD+++ +V AL + +K+ S+ + +AL+
Sbjct: 90 LLLLCSLPSSYTNFCDTILLSRDEVTLAEVYEALQNREKMKGMVQSDASSSKGEALL 146
Score = 28.1 bits (61), Expect(3) = 5e-13
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+L++ K + S+ H + +++ ADL ++++Q DED L
Sbjct: 50 KLFSHKFQESGSVLNHISVFKEIVADLMSMEVQFDDEDLGL 90
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 53.9 bits (128), Expect(3) = 3e-12
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Frame = -1
Query: 317 QVRGKQDRK----STGKGGASRRWRPKERE---CYFCGEKGHMIRNCPKKGVPATTVESK 159
QV+G+ +++ S + + R R K R C +C +K H I+ C K + K
Sbjct: 203 QVKGRSEQRTYNDSNDRDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWK-----LQNKEK 257
Query: 158 PIVDAEADFVLSMQDKEISD------------DRWILDSACSHHICPHKEWFTSYK 27
D +A V S ++ + D D WILD+ACS HI +++WF+SYK
Sbjct: 258 RKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILDTACSFHIYINRDWFSSYK 313
Score = 34.3 bits (77), Expect(3) = 3e-12
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQAL 332
++LLCS+ S++ + +T+L RD+++ +V AL + +K+ S+ + +AL
Sbjct: 147 LLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEAL 202
Score = 28.9 bits (63), Expect(3) = 3e-12
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+L++ K + S+ H + +++ ADL ++++Q DED L
Sbjct: 107 KLFSHKLQESGSVLNHISVFKEIVADLVSMEVQFDDEDLGL 147
>emb|CAN63293.1| hypothetical protein VITISV_025722 [Vitis vinifera]
Length = 347
Score = 77.4 bits (189), Expect = 3e-12
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 15/124 (12%)
Frame = -1
Query: 329 SHREQVRGKQDRKSTGKGGASRRWRPKERECYFCGEKGHMIRNCPKKGVPATTVESKPIV 150
S++E+ R K +S+ S+ + K+ +CY CG+KGHM R+CP+K + E+K
Sbjct: 93 SNQERGRNKFRSESSNNKSRSKSKKRKDIQCYKCGKKGHMKRDCPEKKKRGSVSENKEGS 152
Query: 149 DAEADFVLSMQDKEISD--------------DRWILDSACSHHICPHKEWFTSYKPA-GG 15
A+ V++ +D E D D WILDS CS+H+ P+K+WF +Y+ G
Sbjct: 153 SKSAN-VVTEEDSESGDGDMLSVSSSSDHLTDSWILDSTCSYHMTPNKDWFNTYRSVNSG 211
Query: 14 NIFM 3
+I M
Sbjct: 212 SILM 215
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 54.3 bits (129), Expect(3) = 7e-12
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Frame = -1
Query: 314 VRGKQDRKST-----GKGGASRRWRPKER----ECYFCGEKGHMIRNCPK---------- 192
V G+Q K+T K +S R R K R C +C GH I C K
Sbjct: 409 VWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGK 468
Query: 191 ---KGVPATTVESKPIVD--AEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYK 27
KG ++ + D ++A+ +++ + D+WIL++AC +H+CP+++WF +Y+
Sbjct: 469 YVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYE 528
Score = 36.2 bits (82), Expect(3) = 7e-12
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALV 329
++LLCS+ S++ + +T+LY RD ++ ++V AL +K+ S +++ L+
Sbjct: 352 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLI 408
Score = 25.4 bits (54), Expect(3) = 7e-12
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -3
Query: 615 LYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
L+ K + S+ H +A +++ ADL +++++ +ED L
Sbjct: 313 LFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGL 352
>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
Japonica Group]
Length = 1601
Score = 54.3 bits (129), Expect(3) = 7e-12
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 24/120 (20%)
Frame = -1
Query: 314 VRGKQDRKST-----GKGGASRRWRPKER----ECYFCGEKGHMIRNCPK---------- 192
V G+Q K+T K +S R R K R C +C GH I C K
Sbjct: 202 VWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGK 261
Query: 191 ---KGVPATTVESKPIVD--AEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYK 27
KG ++ + D ++A+ +++ + D+WIL++AC +H+CP+++WF +Y+
Sbjct: 262 YVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYE 321
Score = 36.2 bits (82), Expect(3) = 7e-12
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALV 329
++LLCS+ S++ + +T+LY RD ++ ++V AL +K+ S +++ L+
Sbjct: 145 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLI 201
Score = 25.4 bits (54), Expect(3) = 7e-12
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -3
Query: 615 LYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
L+ K + S+ H +A +++ ADL +++++ +ED L
Sbjct: 106 LFLHKLQDDGSVMDHLSAFKEIIADLESMEVKYDEEDLGL 145
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 60.8 bits (146), Expect(2) = 2e-11
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 19/116 (16%)
Frame = -1
Query: 317 QVRGKQDRK----STGKGGASRRWRPKERE---CYFCGEKGHMIRNCPKKGVPATTVESK 159
QVRG+ +++ S+ + + R R K R C +C +K H I C K + K
Sbjct: 203 QVRGRSEQRTYNDSSDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----LQNKEK 257
Query: 158 PIVDAEADFVLSMQDKEISD------------DRWILDSACSHHICPHKEWFTSYK 27
D +A V S ++ + D D WILD+ACS HIC +++WF+SYK
Sbjct: 258 RKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILDTACSFHICINRDWFSSYK 313
Score = 34.3 bits (77), Expect(2) = 2e-11
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQAL 332
++LLCS+ S++ + +T+L RD+++ +V AL + +K+ S+ + +AL
Sbjct: 147 LLLLCSLPSSYANFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEAL 202
>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
Group] gi|22655747|gb|AAN04164.1| Putative
retrotransposon protein [Oryza sativa Japonica Group]
gi|31431214|gb|AAP53029.1| retrotransposon protein,
putative, Ty1-copia subclass, expressed [Oryza sativa
Japonica Group]
Length = 1229
Score = 52.4 bits (124), Expect(3) = 2e-11
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Frame = -1
Query: 317 QVRGKQDRK----STGKGGASRRWRPKERE---CYFCGEKGHMIRNCPKKGVPATTVESK 159
QVRG+ +++ S + + R R K R C +C +K H I C K + K
Sbjct: 200 QVRGRSEQRTYNDSNDRDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK-----LQNKEK 254
Query: 158 PIVDAEADFVLSMQDKEISD------------DRWILDSACSHHICPHKEWFTSYK 27
D +A V S ++ + +D D WILD+AC IC +++WF+S+K
Sbjct: 255 RKSDGKASVVTSAENSDSADCLVFFAGCVASHDEWILDTACLFLICINRDWFSSHK 310
Score = 33.1 bits (74), Expect(3) = 2e-11
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQAL 332
++LLCS+ S + + +T+L RD+++ +V AL + +K+ S+ + +AL
Sbjct: 144 LLLLCSLPSLYANFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGKAL 199
Score = 28.5 bits (62), Expect(3) = 2e-11
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+L++ K + S+ H + +++ ADL ++++Q DED L
Sbjct: 104 KLFSHKLQESGSVLNHISVFKEIIADLVSMEVQFDDEDLGL 144
>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
Japonica Group]
Length = 778
Score = 48.9 bits (115), Expect(3) = 2e-11
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = -1
Query: 194 KKGVPATTVESKPIVDAEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYKPA-G 18
++G A + K ++A+ +++ + D+WILD+AC++H+CP+++WF +Y+ G
Sbjct: 236 EEGKAAVVTDEK----SDAELLVAYVGCAQTSDQWILDTACTYHMCPNRDWFATYETVQG 291
Query: 17 GNIFM 3
G + M
Sbjct: 292 GTVLM 296
Score = 39.3 bits (90), Expect(3) = 2e-11
Identities = 21/87 (24%), Positives = 47/87 (54%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALVHTE 320
++LLCS+ S++ + +T+LY RD ++ ++V AL + +K+ S ++++LV
Sbjct: 145 LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAESLVVGV 204
Query: 319 NKSGGSKIGKVQEKVELQDGGDRRNES 239
++ + K ++ GD+ E+
Sbjct: 205 GNRRRTQTTNQEIKAQVATVGDQSPEA 231
Score = 25.8 bits (55), Expect(3) = 2e-11
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+L+ K + S+ H +A +++ ADL +++++ +ED L
Sbjct: 105 KLFLHKLQDDESVMDHLSAFKEIVADLESMEVKHDEEDLGL 145
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 49.3 bits (116), Expect(3) = 3e-10
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Frame = -1
Query: 293 KSTGKGGASRRWRPKERECYFCGEKGHMIRNC--PKKGVPATTVE-----SKPIVDAEAD 135
+S +G + R + + R CY C + GH R+C P+KG T+ + + +V +
Sbjct: 214 RSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDN 273
Query: 134 FVLSMQDKEI------SDDRWILDSACSHHICPHKEWFTSY 30
VL + ++E + W++D+A SHH P ++ F Y
Sbjct: 274 VVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRY 314
Score = 33.1 bits (74), Expect(3) = 3e-10
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -2
Query: 502 SVVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALV 329
+++LL S+ S++ +L T+L+G+ I + V SAL+ ++K+ K ++ QAL+
Sbjct: 145 AILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKM-----RKKPENQGQALI 197
Score = 27.7 bits (60), Expect(3) = 3e-10
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+LYA G + +H L LA + +++ +EDKA+
Sbjct: 106 QLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAI 146
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 69.3 bits (168), Expect = 9e-10
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 29/133 (21%)
Frame = -1
Query: 314 VRGKQ-----DRKSTGKGGASRRWRPKER----ECYFCGEKGHMIRNCPK---------- 192
VRG+Q D KS K + R R K R C +C GH I +C K
Sbjct: 144 VRGRQQEKNTDNKSRDKSSSGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGN 203
Query: 191 ---------KGVPATTVESKPIVDAEADFVLSMQDKEISDDRWILDSACSHHICPHKEWF 39
+G A ++KP +A+ +++ + D W+LD+ C++H+CP+++WF
Sbjct: 204 YKPKGKQEEQGKAAVATDNKP----DAELLVAYAGCVQTSDEWLLDTGCTYHMCPNRDWF 259
Query: 38 TSYKPA-GGNIFM 3
T+Y+P GGN+ M
Sbjct: 260 TTYEPVQGGNVLM 272
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 68.2 bits (165), Expect = 2e-09
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Frame = -1
Query: 335 TCSHREQVRGKQDRKSTGKGGASRRWRPKERECYFCGEKGHMIRNCPKK-------GVPA 177
T S + + G + K KG +P + C +C EKGH +CPKK V A
Sbjct: 199 TSSRKGRKNGGKKNKPMSKGA-----KPDD-VCNYCKEKGHWKFDCPKKKKQSEKQSVSA 252
Query: 176 TTVESKPIVDAEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYKPA-GGNIFM 3
E ++E D L + D W+LDS S+HICP +EWFT+Y+ GG+I M
Sbjct: 253 AVAEED--TNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISM 309
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 48.5 bits (114), Expect(3) = 3e-09
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = -1
Query: 293 KSTGKGGASRRWRPKERECYFCGEKGHMIRNC--PKKGVPATTVE-----SKPIVDAEAD 135
+S +G + R + K R CY C + GH R+C PK+G ++ + + +V D
Sbjct: 215 RSGARGKSKVRSKSKARNCYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDD 274
Query: 134 FVLSMQDKEI------SDDRWILDSACSHHICPHKEWFTSYKPAG-GNIFM 3
VL + ++E ++ W++D+A S+H P ++ F Y GN+ M
Sbjct: 275 VVLLINEEEECMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKM 325
Score = 33.5 bits (75), Expect(3) = 3e-09
Identities = 16/40 (40%), Positives = 28/40 (70%)
Frame = -2
Query: 499 VVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKI 380
+VLL S+ S++ L T+L+G+D I + V SAL+ ++K+
Sbjct: 147 IVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEKM 186
Score = 24.6 bits (52), Expect(3) = 3e-09
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -3
Query: 618 ELYAFKRKGGVSMHAHFAAVEKLAADLATVDIQLGDEDKAL 496
+LY G + +H + L LA + +++ +EDK +
Sbjct: 107 QLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKRI 147
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 66.2 bits (160), Expect = 7e-09
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Frame = -1
Query: 338 STCSHREQV-RGKQDRKSTGKGGASR---RWRPKERECYFCGEKGHMIRNCPKKGVP--- 180
ST S V RG+Q ++ + G S+ R K+ EC FC EKGH ++CPK
Sbjct: 135 STTSEEALVARGRQQSQTKERRGMSKSKGRAVAKD-ECAFCHEKGHWKKDCPKLQKKEKV 193
Query: 179 ---ATTVESKPIVDAEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYKPAGGNI 9
A E K V+++ ++S+ + D WILDS C++H+CP ++WF ++ G +
Sbjct: 194 LQDANVAECKSDVESDISLIVSLS-ASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGV 252
>emb|CAN67309.1| hypothetical protein VITISV_028165 [Vitis vinifera]
Length = 344
Score = 66.2 bits (160), Expect = 7e-09
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Frame = -1
Query: 311 RGKQDRKSTGKGGASRRWRPKERECYFCGEKGHMIRNCPKK-----------GVPATTVE 165
RG+ +K+ G+ G SR +C+ C ++GH ++N P + G E
Sbjct: 157 RGRTRKKNNGRRGRSRSKSRGNNKCFKCKKEGHYVKNXPDRKGKENKRNYNSGDATFAKE 216
Query: 164 SKPIVDAEADFVLSMQDKEISDDRWILDSACSHHICPHKEWFTSYKPA-GGNIFM 3
+ D V + SDD WILDS CS+H+ P+ +WF++Y+P GG + M
Sbjct: 217 NSNTTDVLLVXVTN------SDDEWILDSGCSYHMSPNGDWFSTYQPIDGGKVLM 265
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 45.1 bits (105), Expect(2) = 9e-09
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 15/116 (12%)
Frame = -1
Query: 311 RGKQDRKSTGKGGASRRWRPKERECYFCGEKGHMIRNCPK--KGVPATTVESKPIVDAEA 138
RG+ ++ G S C+ EKGH +NCP+ KG+ + + +V A+
Sbjct: 204 RGRSMERNGGGRSKSXSKSKAAMRCFHXKEKGHFRKNCPQRQKGIGXGSNGNAQVVVAQK 263
Query: 137 DF-------------VLSMQDKEISDDRWILDSACSHHICPHKEWFTSYKPAGGNI 9
D VL++ S + WILD+ S+H+ ++ FT++K G++
Sbjct: 264 DSEKQDSSDEGEGGDVLTVSTSS-SAESWILDTGASYHMAYSRDLFTTFKEWNGSV 318
Score = 40.8 bits (94), Expect(2) = 9e-09
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = -2
Query: 502 SVVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSD 386
+++LLCS+ S++ + +TM+YGR+ IS VK AL S +
Sbjct: 145 AMILLCSLPSSYENFVDTMMYGRBSISXNDVKDALQSKE 183
>emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa Japonica Group]
Length = 371
Score = 42.4 bits (98), Expect(2) = 2e-08
Identities = 18/75 (24%), Positives = 45/75 (60%)
Frame = -2
Query: 502 SVVLLCSVHSTHPHLFNTMLYGRDKISFEQVKSALVSSDKINAEGTESKSTDESQALVHT 323
+++LLCS+ ++ H+ T+++G+D I E++ S+L++ D ++ E+ ++++L+
Sbjct: 166 AIILLCSLPPSYEHVVTTLMHGKDTIKTEEIISSLLARDLRRSKKNEAMEASQAESLLVK 225
Query: 322 ENKSGGSKIGKVQEK 278
+ + K +EK
Sbjct: 226 AKHDHEAGVLKSKEK 240
Score = 42.4 bits (98), Expect(2) = 2e-08
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = -1
Query: 257 RPKERECYFCGEKGHMIRNCP-----KKGVPATTVESKPIVDAEADFVLSMQDKEISDDR 93
+ K CY C E GH+ RNCP K G+ + D+ + +L++ + E S +
Sbjct: 238 KEKGARCYKCHEFGHIRRNCPLLKKRKDGIASLAARGDD-SDSSSHEILTVSN-EKSGEA 295
Query: 92 WILDSACSHHI 60
W+LDSA S+H+
Sbjct: 296 WMLDSASSYHV 306