BLASTX nr result
ID: Cocculus22_contig00011162
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00011162
(1139 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citr... 406 e-110
ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation spec... 403 e-110
ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation spec... 396 e-107
ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citr... 395 e-107
ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobr... 395 e-107
ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268... 393 e-107
ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobr... 384 e-104
ref|XP_007044908.1| RNA-binding family protein isoform 5, partia... 384 e-104
ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobr... 384 e-104
ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobr... 384 e-104
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu... 384 e-104
gb|EXB82464.1| Cleavage and polyadenylation specificity factor s... 361 4e-97
ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309... 354 3e-95
ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation spec... 353 6e-95
ref|XP_007225677.1| hypothetical protein PRUPE_ppa002814mg [Prun... 351 3e-94
ref|XP_002312652.1| RNA recognition motif-containing family prot... 343 8e-92
gb|EYU30596.1| hypothetical protein MIMGU_mgv1a002773mg [Mimulus... 325 2e-86
ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [A... 293 7e-77
ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Popu... 288 3e-75
ref|XP_002315647.1| RNA recognition motif-containing family prot... 288 3e-75
>ref|XP_006438179.1| hypothetical protein CICLE_v10030915mg [Citrus clementina]
gi|557540375|gb|ESR51419.1| hypothetical protein
CICLE_v10030915mg [Citrus clementina]
Length = 658
Score = 406 bits (1043), Expect = e-110
Identities = 222/382 (58%), Positives = 258/382 (67%), Gaps = 6/382 (1%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+DY +EEYGG QKMQ+QG GAIPALA+EELMGEDDEYDDLYNDVNVG+G LQ
Sbjct: 1 MDSMAEEQIDYEEEEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ 60
Query: 955 VHRSET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGE 785
+ E GVGNG LQ ++T+ P + + G SQ +PGV V GK + G
Sbjct: 61 FQQPEAPPPSAGVGNGRLQVKKTDVPEQQV-QAGVSQGSNVPGVSVEGKYTNAGT----- 114
Query: 784 HNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGV 605
H + + SGN ++VSQ G + E DA RN GF+G + PP+TGV
Sbjct: 115 HFPAQNDVQVAVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPPRTGV 174
Query: 604 DPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN-RSMVNENLSRP-LESGATM 431
DPS + + A E + + + G AG +GA R+MVNEN RP LE+G TM
Sbjct: 175 DPSNMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNINVNRAMVNENQIRPPLENGGTM 234
Query: 430 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGM 251
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFFD AAAACKDGM
Sbjct: 235 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGM 294
Query: 250 NGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXX 71
NGHVFNGR CVVAFASPQT+KQMGA+YMNKNQ Q QSQTQGRRPM
Sbjct: 295 NGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQSG 354
Query: 70 XXXRNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG+ NRG
Sbjct: 355 DGGRNFGRGGWGRGGQGVPNRG 376
>ref|XP_006483997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 658
Score = 403 bits (1035), Expect = e-110
Identities = 221/382 (57%), Positives = 257/382 (67%), Gaps = 6/382 (1%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+DY +EEYGG QKMQ+QG GAIPALA+EELMGEDDEYDDLYNDVNVG+G LQ
Sbjct: 1 MDSMAEEQIDYEEEEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQ 60
Query: 955 VHRSET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGE 785
+ E GVGNG LQ ++T+ P + + G SQ +PGV V GK + G
Sbjct: 61 FQQPEAPPPSAGVGNGRLQVKKTDVPEQQV-QAGVSQGSNVPGVSVEGKYTNAGT----- 114
Query: 784 HNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGV 605
H + + SGN ++VSQ G + E DA RN GF+G + P +TGV
Sbjct: 115 HFPAQNDVQVAVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGV 174
Query: 604 DPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN-RSMVNENLSRP-LESGATM 431
DPS + + A E + + + G AG +GA R+MVNEN RP LE+G TM
Sbjct: 175 DPSNMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNINVNRAMVNENQIRPPLENGGTM 234
Query: 430 LFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGM 251
LFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEFFD AAAACKDGM
Sbjct: 235 LFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGM 294
Query: 250 NGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXX 71
NGHVFNGR CVVAFASPQT+KQMGA+YMNKNQ Q QSQTQGRRPM
Sbjct: 295 NGHVFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQTQGRRPMNDGGGRGGNMNYQSG 354
Query: 70 XXXRNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG+ NRG
Sbjct: 355 DGGRNFGRGGWGRGGQGVPNRG 376
>ref|XP_006483998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Citrus sinensis]
Length = 655
Score = 396 bits (1017), Expect = e-107
Identities = 218/379 (57%), Positives = 252/379 (66%), Gaps = 6/379 (1%)
Frame = -2
Query: 1123 MAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHR 947
MAEEQ+DY ++EYGG QKMQ+QG GAIPALA+EELMGEDDEYDDLYNDVNVG+G LQ +
Sbjct: 1 MAEEQIDYEEDEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDVNVGDGLLQFQQ 60
Query: 946 SET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEHNN 776
E GVGNG LQ ++T+ P R + GGSQ IPGV V GK + G H
Sbjct: 61 PEAPPPSAGVGNGRLQVKKTDVPEQRV-QVGGSQGSNIPGVSVEGKYTNAG-----SHFP 114
Query: 775 NKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPS 596
+ + SGN ++VSQ G + E DA RN GF+G + P +TGVDPS
Sbjct: 115 AQNDVQVAVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPS 174
Query: 595 QISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN-RSMVNENLSRP-LESGATMLFV 422
+ + A E + + + G AG +GA R MVNEN RP LE+G TMLFV
Sbjct: 175 NMPGRVANEPAPVLNPGAAGPQGALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFV 234
Query: 421 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNGH 242
GELHWWTTDAELE+VLSQYGR KEIKF+DERASGKSKGYC VEFFD AAAACKDGMNGH
Sbjct: 235 GELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGH 294
Query: 241 VFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXXX 62
VFNGR CVVAFASPQT+KQMGA+YMNKNQ Q QSQ QG RPM
Sbjct: 295 VFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMNDGGGRGGNTNYQSGDGG 354
Query: 61 RNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG+ NRG
Sbjct: 355 RNFGRGGWGRGGQGVPNRG 373
>ref|XP_006438180.1| hypothetical protein CICLE_v10030917mg [Citrus clementina]
gi|567891321|ref|XP_006438181.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540376|gb|ESR51420.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
gi|557540377|gb|ESR51421.1| hypothetical protein
CICLE_v10030917mg [Citrus clementina]
Length = 655
Score = 395 bits (1015), Expect = e-107
Identities = 218/379 (57%), Positives = 255/379 (67%), Gaps = 6/379 (1%)
Frame = -2
Query: 1123 MAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHR 947
MAEEQ+DY ++EYGG QKMQ+QG GAIPALA+EELMGEDDEYDDLYND+NVG+G LQ +
Sbjct: 1 MAEEQIDYEEDEYGGAQKMQYQGGGAIPALADEELMGEDDEYDDLYNDINVGDGLLQFQQ 60
Query: 946 SET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEHNN 776
E GVGNG LQ ++T+ P R + GGSQ IPGV V GK + G S + N+
Sbjct: 61 PEAPPPSAGVGNGRLQVKKTDVPEQRV-QVGGSQGSNIPGVSVEGKYTNAG-SDFPAQND 118
Query: 775 NKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPS 596
+ + SGN ++VSQ G + E DA RN GF+G + P +TGVDPS
Sbjct: 119 VQ----VAVNRPNMGSGNYPDGASVSQKGSVQETTHDAHVRNMGFQGSTSGPSRTGVDPS 174
Query: 595 QISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN-RSMVNENLSRP-LESGATMLFV 422
+ + A E + + + G AG +GA R MVNEN RP LE+G TMLFV
Sbjct: 175 NMPGRAANEPAPVLNPGAAGPQGALIPANQMGVNANVNRVMVNENQIRPPLENGGTMLFV 234
Query: 421 GELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNGH 242
GELHWWTTDAELE+VLSQYGR KEIKF+DERASGKSKGYC VEFFD AAAACKDGMNGH
Sbjct: 235 GELHWWTTDAELESVLSQYGRAKEIKFFDERASGKSKGYCQVEFFDAAAAAACKDGMNGH 294
Query: 241 VFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXXX 62
VFNGR CVVAFASPQT+KQMGA+YMNKNQ Q QSQ QG RPM
Sbjct: 295 VFNGRPCVVAFASPQTLKQMGASYMNKNQGQPQSQNQGSRPMNDGGGRGGNTNYQSGDGG 354
Query: 61 RNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG+ NRG
Sbjct: 355 RNFGRGGWGRGGQGVPNRG 373
>ref|XP_007044902.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695488|ref|XP_007044903.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708837|gb|EOY00734.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708838|gb|EOY00735.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
Length = 653
Score = 395 bits (1014), Expect = e-107
Identities = 217/382 (56%), Positives = 260/382 (68%), Gaps = 7/382 (1%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+D+GDEEYGG QKMQ+QGSGAIPALA+EE+MGEDDEYDDLYNDVNVGEGFLQ
Sbjct: 1 MDAMAEEQIDFGDEEYGGAQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 955 VHRSETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGE 785
+ RSE GG+G+ LQAQ+ E P R E GGSQ + IPGV V GK + Y E
Sbjct: 61 LQRSEAPPQPGGMGSTGLQAQKNEAPEPRG-EAGGSQGLNIPGVSVQGKHLNV-TARYPE 118
Query: 784 HNNNKGGYVIGKGLEGRSSGNSGYPS--AVSQGGRLPEMAPDAQARNEGFRGQATLPPKT 611
+ + G+ YPS ++SQ GR+ E D Q +N GF+G ++ K
Sbjct: 119 QDGQPA-------VSRPEMGSGSYPSGTSISQKGRVMEGTQDTQVKNMGFQGLSSASHKV 171
Query: 610 GVDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNENLSRP-LESGAT 434
G+DPS + K A + + G G +GA N M++EN RP +E+G T
Sbjct: 172 GIDPSGVPQKIANVPAQSLNSGTGGPQGAPHVPPNQMGLNVNHPMISENQVRPPIENGPT 231
Query: 433 MLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDG 254
MLFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+DP +AAACK+G
Sbjct: 232 MLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDPASAAACKEG 291
Query: 253 MNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXX 74
M+G++FNGRACVVAFASPQT+KQMGA+YMNKNQ Q Q+Q QGRRP
Sbjct: 292 MDGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRP-NDGLGRGGNMNYQS 350
Query: 73 XXXXRNYNKVGWGRGGQGMSNR 8
RNY + GWGRGGQG+ NR
Sbjct: 351 GDAGRNYGRGGWGRGGQGVVNR 372
>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
uncharacterized protein LOC100268141 isoform 2 [Vitis
vinifera]
Length = 647
Score = 393 bits (1009), Expect = e-107
Identities = 221/380 (58%), Positives = 257/380 (67%), Gaps = 7/380 (1%)
Frame = -2
Query: 1123 MAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHR 947
MAEEQLDY DEEYGG QKM FQG GAI ALA++ELMGEDDEYDDLYNDVNVGEGFLQ+HR
Sbjct: 1 MAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQMHR 60
Query: 946 SET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEHNN 776
SE G + G QA +T+ P + E G SQ + IPGV + GK S +
Sbjct: 61 SEAPAPSGVMAGGPFQAHKTDVPPQKL-EAGTSQGLIIPGVSIEGKYSNP------HFHE 113
Query: 775 NKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPS 596
K G + KG E S+ + PS VSQ GR+ EM D Q RN GF+G +P KTG +PS
Sbjct: 114 KKEGPMAVKGPEMGSTSHLDGPS-VSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAEPS 172
Query: 595 QISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN--RSMVNENLSRP-LESGATMLF 425
+ K A E + + + G G R N R MVNEN RP +++GATMLF
Sbjct: 173 DVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLF 232
Query: 424 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNG 245
VGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF+D +AAAACK+GMNG
Sbjct: 233 VGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAACKEGMNG 292
Query: 244 HVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXX 65
++FNGRACVVAFASPQT+KQMGA+YMNK Q QSQ+QGRRPM
Sbjct: 293 YIFNGRACVVAFASPQTLKQMGASYMNK--TQAQSQSQGRRPMNDGVGRGGGMNMQGGDA 350
Query: 64 XRNYNKVGWGRGGQGMSNRG 5
RNY + GWGRGGQG+ NRG
Sbjct: 351 GRNYGRGGWGRGGQGILNRG 370
>ref|XP_007044909.1| RNA-binding family protein isoform 6 [Theobroma cacao]
gi|508708844|gb|EOY00741.1| RNA-binding family protein
isoform 6 [Theobroma cacao]
Length = 602
Score = 384 bits (985), Expect = e-104
Identities = 212/383 (55%), Positives = 255/383 (66%), Gaps = 8/383 (2%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+D+GDEEYGG QKMQ+QGSGAIPALA+EE+MGEDDEYDDLYNDVNVGEGFLQ
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 955 VHRSETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTG---PSS 794
+ RSE GG+G+ L+AQR E P R E GGSQ + IPGV V GK P
Sbjct: 61 LQRSEAPLQPGGLGSTGLKAQRNEAPEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEK 119
Query: 793 YGEHNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPK 614
+ N+ V G G S++SQ G + E D Q +N GF+G + K
Sbjct: 120 EEQPAVNRPEMVSGSYPSG---------SSISQKGSVTEGTHDKQVKNLGFQGLTSASNK 170
Query: 613 TGVDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNEN-LSRPLESGA 437
G+DPS + K A + + + G G +G N ++NEN + P+E+G
Sbjct: 171 VGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGP 230
Query: 436 TMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKD 257
TMLFVGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEF+DP++AA CK+
Sbjct: 231 TMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKE 290
Query: 256 GMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXX 77
GMNG++FNGRACVVAFASPQT+KQMGA+YMNKNQ Q Q+Q QGRRP
Sbjct: 291 GMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQ 349
Query: 76 XXXXXRNYNKVGWGRGGQGMSNR 8
RNY + GWGRGGQG NR
Sbjct: 350 SGDAGRNYGRGGWGRGGQGGVNR 372
>ref|XP_007044908.1| RNA-binding family protein isoform 5, partial [Theobroma cacao]
gi|508708843|gb|EOY00740.1| RNA-binding family protein
isoform 5, partial [Theobroma cacao]
Length = 656
Score = 384 bits (985), Expect = e-104
Identities = 212/383 (55%), Positives = 255/383 (66%), Gaps = 8/383 (2%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+D+GDEEYGG QKMQ+QGSGAIPALA+EE+MGEDDEYDDLYNDVNVGEGFLQ
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 955 VHRSETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTG---PSS 794
+ RSE GG+G+ L+AQR E P R E GGSQ + IPGV V GK P
Sbjct: 61 LQRSEAPLQPGGLGSTGLKAQRNEAPEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEK 119
Query: 793 YGEHNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPK 614
+ N+ V G G S++SQ G + E D Q +N GF+G + K
Sbjct: 120 EEQPAVNRPEMVSGSYPSG---------SSISQKGSVTEGTHDKQVKNLGFQGLTSASNK 170
Query: 613 TGVDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNEN-LSRPLESGA 437
G+DPS + K A + + + G G +G N ++NEN + P+E+G
Sbjct: 171 VGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGP 230
Query: 436 TMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKD 257
TMLFVGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEF+DP++AA CK+
Sbjct: 231 TMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKE 290
Query: 256 GMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXX 77
GMNG++FNGRACVVAFASPQT+KQMGA+YMNKNQ Q Q+Q QGRRP
Sbjct: 291 GMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQ 349
Query: 76 XXXXXRNYNKVGWGRGGQGMSNR 8
RNY + GWGRGGQG NR
Sbjct: 350 SGDAGRNYGRGGWGRGGQGGVNR 372
>ref|XP_007044907.1| RNA-binding family protein isoform 4 [Theobroma cacao]
gi|508708842|gb|EOY00739.1| RNA-binding family protein
isoform 4 [Theobroma cacao]
Length = 697
Score = 384 bits (985), Expect = e-104
Identities = 212/383 (55%), Positives = 255/383 (66%), Gaps = 8/383 (2%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+D+GDEEYGG QKMQ+QGSGAIPALA+EE+MGEDDEYDDLYNDVNVGEGFLQ
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 955 VHRSETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTG---PSS 794
+ RSE GG+G+ L+AQR E P R E GGSQ + IPGV V GK P
Sbjct: 61 LQRSEAPLQPGGLGSTGLKAQRNEAPEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEK 119
Query: 793 YGEHNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPK 614
+ N+ V G G S++SQ G + E D Q +N GF+G + K
Sbjct: 120 EEQPAVNRPEMVSGSYPSG---------SSISQKGSVTEGTHDKQVKNLGFQGLTSASNK 170
Query: 613 TGVDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNEN-LSRPLESGA 437
G+DPS + K A + + + G G +G N ++NEN + P+E+G
Sbjct: 171 VGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGP 230
Query: 436 TMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKD 257
TMLFVGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEF+DP++AA CK+
Sbjct: 231 TMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKE 290
Query: 256 GMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXX 77
GMNG++FNGRACVVAFASPQT+KQMGA+YMNKNQ Q Q+Q QGRRP
Sbjct: 291 GMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQ 349
Query: 76 XXXXXRNYNKVGWGRGGQGMSNR 8
RNY + GWGRGGQG NR
Sbjct: 350 SGDAGRNYGRGGWGRGGQGGVNR 372
>ref|XP_007044904.1| RNA-binding family protein isoform 1 [Theobroma cacao]
gi|590695496|ref|XP_007044905.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|590695500|ref|XP_007044906.1| RNA-binding family
protein isoform 1 [Theobroma cacao]
gi|508708839|gb|EOY00736.1| RNA-binding family protein
isoform 1 [Theobroma cacao] gi|508708840|gb|EOY00737.1|
RNA-binding family protein isoform 1 [Theobroma cacao]
gi|508708841|gb|EOY00738.1| RNA-binding family protein
isoform 1 [Theobroma cacao]
Length = 652
Score = 384 bits (985), Expect = e-104
Identities = 212/383 (55%), Positives = 255/383 (66%), Gaps = 8/383 (2%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQ+D+GDEEYGG QKMQ+QGSGAIPALA+EE+MGEDDEYDDLYNDVNVGEGFLQ
Sbjct: 1 MDAMAEEQIDFGDEEYGGGQKMQYQGSGAIPALADEEMMGEDDEYDDLYNDVNVGEGFLQ 60
Query: 955 VHRSETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTG---PSS 794
+ RSE GG+G+ L+AQR E P R E GGSQ + IPGV V GK P
Sbjct: 61 LQRSEAPLQPGGLGSTGLKAQRNEAPEPRV-EAGGSQGLNIPGVSVQGKHPNVSARYPEK 119
Query: 793 YGEHNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPK 614
+ N+ V G G S++SQ G + E D Q +N GF+G + K
Sbjct: 120 EEQPAVNRPEMVSGSYPSG---------SSISQKGSVTEGTHDKQVKNLGFQGLTSASNK 170
Query: 613 TGVDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNEN-LSRPLESGA 437
G+DPS + K A + + + G G +G N ++NEN + P+E+G
Sbjct: 171 VGIDPSGVPQKIANDPAQSLNSGTGGPQGPPHVPPNQMGTNVNHPVMNENQVQPPIENGP 230
Query: 436 TMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKD 257
TMLFVGELHWWTTDAELE+VLSQYGR+KEIKF+DE+ASGKSKGYC VEF+DP++AA CK+
Sbjct: 231 TMLFVGELHWWTTDAELESVLSQYGRLKEIKFFDEKASGKSKGYCQVEFYDPSSAAVCKE 290
Query: 256 GMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXX 77
GMNG++FNGRACVVAFASPQT+KQMGA+YMNKNQ Q Q+Q QGRRP
Sbjct: 291 GMNGYMFNGRACVVAFASPQTLKQMGASYMNKNQGQSQAQPQGRRP-NEGLGRGGNLNYQ 349
Query: 76 XXXXXRNYNKVGWGRGGQGMSNR 8
RNY + GWGRGGQG NR
Sbjct: 350 SGDAGRNYGRGGWGRGGQGGVNR 372
>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
gi|223546091|gb|EEF47594.1| RNA binding protein, putative
[Ricinus communis]
Length = 644
Score = 384 bits (985), Expect = e-104
Identities = 217/380 (57%), Positives = 257/380 (67%), Gaps = 7/380 (1%)
Frame = -2
Query: 1123 MAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHR 947
MA+EQ+DY DEEYGG QK+Q+QGSGAIPALAEEE MGEDDEYDDLYNDVN+GE FLQ+HR
Sbjct: 1 MADEQIDYEDEEYGGAQKLQYQGSGAIPALAEEE-MGEDDEYDDLYNDVNIGENFLQMHR 59
Query: 946 SETLGG---VGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEHNN 776
SE VGNG Q + + E GGSQ + IPGV V K S TG + + E N
Sbjct: 60 SEAPPAPPSVGNGGFQPRNSN---DLRVESGGSQGLNIPGVAVESKYS-TG-THFPEQN- 113
Query: 775 NKGGYVIGKGLEGRSSGNSGYP--SAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVD 602
++G G+ GYP S+++Q R+ EM D+QARN GF+G + P GVD
Sbjct: 114 ----------VKGPEIGSVGYPDGSSIAQKTRVMEMTNDSQARNMGFQGSTSGPSNIGVD 163
Query: 601 PSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNENLSRP-LESGATMLF 425
PS ++ K + + + +P+ G V NRS NEN RP LE+G+TML+
Sbjct: 164 PSDMNNKISNDPTPVPNAGVPRVIPQLPASQMNMNMDTNRSATNENQIRPPLENGSTMLY 223
Query: 424 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNG 245
VGELHWWTTDAELENVLSQYG VKEIKF+DERASGKSKGYC VEF+D AAAACK+GMNG
Sbjct: 224 VGELHWWTTDAELENVLSQYGMVKEIKFFDERASGKSKGYCQVEFYDAAAAAACKEGMNG 283
Query: 244 HVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXX 65
H+FNGRACVVAFAS QT+KQMGA+YMNKNQ Q QSQ QGRRPM
Sbjct: 284 HLFNGRACVVAFASQQTLKQMGASYMNKNQGQPQSQNQGRRPMNDGAGRGGNMNYQGGDA 343
Query: 64 XRNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG+ NRG
Sbjct: 344 GRNFGRGGWGRGGQGILNRG 363
>gb|EXB82464.1| Cleavage and polyadenylation specificity factor subunit [Morus
notabilis]
Length = 636
Score = 361 bits (926), Expect = 4e-97
Identities = 214/385 (55%), Positives = 248/385 (64%), Gaps = 12/385 (3%)
Frame = -2
Query: 1123 MAEEQLDYGDEEYGG-QKMQFQGSG-AIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVH 950
MAE+ +D+ DEEYGG QK Q+QGSG AI ALA+EELMG+DDEYDDLYNDVNVGEGFLQ+
Sbjct: 1 MAEDHIDFEDEEYGGAQKHQYQGSGGAISALADEELMGDDDEYDDLYNDVNVGEGFLQLQ 60
Query: 949 RSET-----LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGE 785
RSE GVGNG LQAQ+ P R E GGSQ+ IPGV G+ S G G+
Sbjct: 61 RSEAPSLPAAAGVGNG-LQAQKRNFPEPRE-EIGGSQQPNIPGVSAEGRFSSAGSQFPGQ 118
Query: 784 HNNNKGGYVIGKGLEGRSSGNSGYPSAVS--QGGRLPEMAPDAQARNEGFRGQATLPPKT 611
+ G + K E +G+ YP S Q GR+ GF+G +
Sbjct: 119 QD----GLKVDKKSE---AGSMVYPDGASGSQKGRIVA----------GFQGSKPMLHSV 161
Query: 610 GVDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRS--MVNENLSRP-LESG 440
GVD S I K E P+ G AG RG N S +VNEN RP +E+G
Sbjct: 162 GVDSSDIPGKMVNEPIQAPNSGGAGPRGILPMQGNQTTVNANVSHPIVNENQIRPSIENG 221
Query: 439 ATMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACK 260
+TMLFVGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VE++D AA ACK
Sbjct: 222 STMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEYYDAAAAVACK 281
Query: 259 DGMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXX 80
+GM+GHVFNGRACVVAFASPQT+KQMGAAYM+KNQVQ QSQ QGRRP+
Sbjct: 282 EGMHGHVFNGRACVVAFASPQTLKQMGAAYMSKNQVQNQSQPQGRRPINDGVGRGGNPNF 341
Query: 79 XXXXXXRNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG NRG
Sbjct: 342 QSGDGGRNFGRGGWGRGGQGAPNRG 366
>ref|XP_004310003.1| PREDICTED: uncharacterized protein LOC101309507 [Fragaria vesca
subsp. vesca]
Length = 646
Score = 354 bits (909), Expect = 3e-95
Identities = 207/385 (53%), Positives = 244/385 (63%), Gaps = 9/385 (2%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD M EEQ+DY +EEYGG QK+Q+Q SGAIPALA+EE M EDDEYDDLYNDVNVGEGFLQ
Sbjct: 1 MDPMGEEQIDYEEEEYGGAQKLQYQESGAIPALADEEPMVEDDEYDDLYNDVNVGEGFLQ 60
Query: 955 VHRSETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGE 785
+HR E GVGNG LQAQ+ P R + G SQEV PG V GK S S E
Sbjct: 61 MHRPEPPLPPAGVGNGGLQAQKNNVPEQRV-QGGASQEVKNPGFSVEGKYS-----SVPE 114
Query: 784 HNNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGV 605
+ V+ P SQ GR+ EM DAQ RN GF+G AT+
Sbjct: 115 QKDQPPVSVV--------------PEMASQKGRVMEMTHDAQVRNMGFQGAATMQSNVVA 160
Query: 604 DPSQISVKFAG---EQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNENLSRP-LESGA 437
D S ++ K A + GP V+ NR MVNEN RP +E+G+
Sbjct: 161 DSSDLTGKIANGPIPSMNSGSNGPPAVQ-QMPANQMNMKINVNRPMVNENQIRPPVENGS 219
Query: 436 TMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKD 257
LFVGELHWWTTDAELE VLSQ+GR+KEIKF+DERASGKSKGYC V+F+DP AA+ACK+
Sbjct: 220 ATLFVGELHWWTTDAELEGVLSQFGRIKEIKFFDERASGKSKGYCQVDFYDPAAASACKE 279
Query: 256 GMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXX 77
GM+G+VFNGRACVVAFAS QT+KQMG +Y+NK+Q QVQ+Q QGRRPM
Sbjct: 280 GMDGYVFNGRACVVAFASSQTLKQMGDSYVNKSQGQVQTQPQGRRPMNDGAGRGGNMNFQ 339
Query: 76 XXXXXRNYNK-VGWGRGGQGMSNRG 5
RN+ + WGRGGQG+ NRG
Sbjct: 340 GGDTGRNFGRGNNWGRGGQGVLNRG 364
>ref|XP_006341786.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
CG7185-like isoform X1 [Solanum tuberosum]
gi|565349616|ref|XP_006341787.1| PREDICTED: cleavage and
polyadenylation specificity factor subunit CG7185-like
isoform X2 [Solanum tuberosum]
Length = 648
Score = 353 bits (907), Expect = 6e-95
Identities = 205/386 (53%), Positives = 245/386 (63%), Gaps = 10/386 (2%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGGQ-KMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD A+EQLDYGDEEYGG KMQ+ GSG IPALAE+E+MGEDDEYDDLYNDVN+GEGFLQ
Sbjct: 1 MDPTADEQLDYGDEEYGGSHKMQYHGSGTIPALAEDEMMGEDDEYDDLYNDVNIGEGFLQ 60
Query: 955 VHRSET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGE 785
+ RSE GNG QAQ+ P SRA G S+E IPG+ GK + T +
Sbjct: 61 LQRSEVPVPSVDAGNGNFQAQKDSFPASRAGGLG-SEEAKIPGIATEGKYAGTEV----Q 115
Query: 784 HNNNKGGYVIGKGLEGRS-SGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTG 608
KG V+ + E + + PSA++ M ++QA N G++G +P K G
Sbjct: 116 FPQQKGEPVVERETERPADAAQKARPSAIT-------MTLNSQAGNSGYQGSMPMPQKIG 168
Query: 607 VDPSQISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXNRSMVNENLS----RP-LES 443
DP + K A E + L + G R N +M N +S RP LE+
Sbjct: 169 ADPMAMPEKNASEATPLMNSVVPGPRVVPHMPTNQLNSSGNVNMNNPVISETPFRPSLEN 228
Query: 442 GATMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAAC 263
G TMLFVGELHWWTTDAELE+VL+QYG VKEIKF+DERASGKSKGYC VEFFDP +AAAC
Sbjct: 229 GNTMLFVGELHWWTTDAELESVLTQYGNVKEIKFFDERASGKSKGYCQVEFFDPASAAAC 288
Query: 262 KDGMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXX 83
K+GMNG+ FNGRACVVAFA+PQT+KQMG++Y NK Q QVQSQ QGRRPM
Sbjct: 289 KEGMNGYNFNGRACVVAFATPQTIKQMGSSYANKTQNQVQSQPQGRRPM-NEGVGRGGPN 347
Query: 82 XXXXXXXRNYNKVGWGRGGQGMSNRG 5
RN+ + WGRGG GM NRG
Sbjct: 348 YTPGDAGRNFGRGSWGRGGPGMPNRG 373
>ref|XP_007225677.1| hypothetical protein PRUPE_ppa002814mg [Prunus persica]
gi|462422613|gb|EMJ26876.1| hypothetical protein
PRUPE_ppa002814mg [Prunus persica]
Length = 630
Score = 351 bits (901), Expect = 3e-94
Identities = 207/381 (54%), Positives = 244/381 (64%), Gaps = 8/381 (2%)
Frame = -2
Query: 1123 MAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHR 947
MAEEQ+DY DEEYGG QK+Q+QGSGAI ALA+EE M EDDEYDDLYNDVNV EGFLQ+HR
Sbjct: 1 MAEEQIDYEDEEYGGAQKLQYQGSGAISALADEEPMVEDDEYDDLYNDVNVREGFLQMHR 60
Query: 946 SETL---GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEHNN 776
SE GGVGNG LQAQ+T+ +R + G SQE IPGV V GK
Sbjct: 61 SEAPLPPGGVGNGGLQAQKTDVTETRV-QAGVSQESKIPGVSVQGK-------------- 105
Query: 775 NKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPS 596
SS + +P Q P +A + + + G+ G T+PP G D S
Sbjct: 106 -------------YSSAVAQFPEQQGQ----PPVAKEPELGSTGY-GSTTMPPNVGGDSS 147
Query: 595 QISVKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN--RSMVNENLSRP-LESGATMLF 425
I+ K A E + G AG G N R M NEN RP +E+G+TMLF
Sbjct: 148 DITGKTALESVPSMNSGTAGPTGVTQMPTNQISIKVNANRPMFNENQIRPPVENGSTMLF 207
Query: 424 VGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNG 245
VGELHWWTTDAELE+VLSQYGRVKEIKF+DERASGKSKGYC VEF DP AA ACK+GM+G
Sbjct: 208 VGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFHDPAAATACKEGMDG 267
Query: 244 HVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPM-XXXXXXXXXXXXXXXX 68
++FNGRACVVAFASPQT+KQMGA+Y++K+Q Q QSQ GRRPM
Sbjct: 268 YLFNGRACVVAFASPQTLKQMGASYLSKSQGQTQSQQPGRRPMNEGVGRGGGVNYQTGDT 327
Query: 67 XXRNYNKVGWGRGGQGMSNRG 5
RN+ + GWGRGGQG++NRG
Sbjct: 328 GGRNFGRGGWGRGGQGVANRG 348
>ref|XP_002312652.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222852472|gb|EEE90019.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 619
Score = 343 bits (880), Expect = 8e-92
Identities = 202/377 (53%), Positives = 238/377 (63%), Gaps = 9/377 (2%)
Frame = -2
Query: 1108 LDYGDEEYGGQKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHRSETLGG 929
+DY +EE KMQ+QGSGAIPALAEEE MGEDDEYDDLYNDVNVGE FLQ+H SE
Sbjct: 1 MDYEEEE----KMQYQGSGAIPALAEEE-MGEDDEYDDLYNDVNVGENFLQMHGSEAPAP 55
Query: 928 ---VGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEHNNNKGGYV 758
VGNG Q T E GGSQ +AI G GP+ G ++N K +
Sbjct: 56 PATVGNGGFQ---TRNAHESRIETGGSQALAITG---------GGPAVEGIYSNAKAHFP 103
Query: 757 IGKGLEGRSSGNSGYP---SAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPSQIS 587
K + P S+V+Q GR+ EM+ D Q RN GF+ +PP GVDPS +S
Sbjct: 104 EQKQVAVAVEAQDVGPVDGSSVAQKGRVIEMSHDVQVRNMGFQKSTPVPPGIGVDPSDMS 163
Query: 586 VKFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN--RSMVNENLSRP-LESGATMLFVGE 416
K A E LP G AG RGA + R +VNEN RP +E+G+T L+VGE
Sbjct: 164 RKNAIEPEPLPITGSAGPRGAPQMQVNQMHMSADVNRPVVNENQVRPPIENGSTTLYVGE 223
Query: 415 LHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNGHVF 236
LHWWTTDAELE+ SQ+GRVKEIKF+DERASGKSKGYC V+F++ AAAACK+GMNGHVF
Sbjct: 224 LHWWTTDAELESFASQFGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNGHVF 283
Query: 235 NGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXXXRN 56
NGR CVVAFASPQT+KQMGA+YMNK Q Q Q+Q+QGR M RN
Sbjct: 284 NGRPCVVAFASPQTLKQMGASYMNKTQGQPQTQSQGRGSMNDGAGRGGNANFQSGDGGRN 343
Query: 55 YNKVGWGRGGQGMSNRG 5
Y + WGRGGQG+ NRG
Sbjct: 344 YGRGAWGRGGQGILNRG 360
>gb|EYU30596.1| hypothetical protein MIMGU_mgv1a002773mg [Mimulus guttatus]
Length = 639
Score = 325 bits (834), Expect = 2e-86
Identities = 197/388 (50%), Positives = 235/388 (60%), Gaps = 12/388 (3%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD + +EQLDYGDEEYGG QKMQ+ GAIPALAE+E++G+DDEYDDLYNDVNVGEGF+Q
Sbjct: 1 MDPVTDEQLDYGDEEYGGNQKMQYHHGGAIPALAEDEMIGDDDEYDDLYNDVNVGEGFMQ 60
Query: 955 VHRSETL--GGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVGGKDSKTGPSSYGEH 782
+ RSE VGN + + PG+RA E SQEV VG G + G +
Sbjct: 61 MQRSEAPPPSAVGNNSFSISKNTAPGTRA-EAIASQEVNNGRVGNEGSYAPNGVQLSDQK 119
Query: 781 NNNKGGYVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVD 602
NN + G P SQ RLPE+A +QA + G++G + KT D
Sbjct: 120 NNLT------------AVGGPAQPVDASQRVRLPEVANSSQAAHLGYQGSEIMLHKTATD 167
Query: 601 PSQISVKFAGEQSSL--PDQGPA-GVRGAXXXXXXXXXXXXN---RSMVNENLSRPL--E 446
S GE +SL P+ G + GV A RSM +E L RP E
Sbjct: 168 RMNNSENIVGEPASLVYPNTGSSKGVPQAPSNLMNSNANVNVNVNRSMDDEYLIRPSGGE 227
Query: 445 SGATMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAA 266
+G M++VGELHWWTTDAE+E+VL QYGRVKEIKF+DERASGKSKGYC VEF+DP AA A
Sbjct: 228 NGNPMIYVGELHWWTTDAEVESVLIQYGRVKEIKFFDERASGKSKGYCQVEFYDPAAATA 287
Query: 265 CKDGMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXX 86
CKDGM GH+FNGRACVV +A+PQT KQMGA+Y NKNQ Q QSQ QGR PM
Sbjct: 288 CKDGMQGHIFNGRACVVTYANPQTSKQMGASY-NKNQGQSQSQLQGRNPMNDGAGRGNGT 346
Query: 85 XXXXXXXXRNYNK-VGWGRGGQGMSNRG 5
RN+ + GWGRG Q NRG
Sbjct: 347 NYPSGDAGRNFGRGGGWGRGNQA-PNRG 373
>ref|XP_006852230.1| hypothetical protein AMTR_s00049p00146760 [Amborella trichopoda]
gi|548855834|gb|ERN13697.1| hypothetical protein
AMTR_s00049p00146760 [Amborella trichopoda]
Length = 659
Score = 293 bits (751), Expect = 7e-77
Identities = 197/409 (48%), Positives = 236/409 (57%), Gaps = 32/409 (7%)
Frame = -2
Query: 1132 MDQMAEEQLDYGDEEYGG-QKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQ 956
MD MAEEQLDY DE+YG QKM FQ GAI ALA+EELMGEDDEYDDLYNDVNVG+GF+Q
Sbjct: 1 MDPMAEEQLDYEDEDYGANQKMPFQTGGAISALADEELMGEDDEYDDLYNDVNVGDGFMQ 60
Query: 955 VHRSET---LGGVGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVG---VGGKDSKTGPSS 794
+ + +GNG +QA + E P S P V IPGVG G KD+K S
Sbjct: 61 SLQHQEPVQYESMGNG-VQAPKEE-PISTPP-------VNIPGVGHEEKGEKDAKL--SG 109
Query: 793 YGEHNNNKGGYVIGKG-LEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPP 617
+ + + K L G SSG R+ E + Q + GFR A PP
Sbjct: 110 FSDLDQKKAFQEQASNQLAGASSGLKI---------RVSEPVSEPQPQASGFRN-APAPP 159
Query: 616 KTGVDPSQISVKFAGEQ------SSLPDQGPAGVRG------AXXXXXXXXXXXXNRSMV 473
G + A +Q +++P GP G A +++
Sbjct: 160 AKGSGFNTAGAMDANKQLAQTSSNAVPRVGPGPGPGIGAGPNANMNRMMGPGPNQAGAVI 219
Query: 472 N-------ENLSRPL----ESGATMLFVGELHWWTTDAELENVLSQYGRVKEIKFYDERA 326
+ EN +R ESG TMLFVGEL WWTTDAELE+VLSQYGRVK++KF+DERA
Sbjct: 220 DTSARFGSENSNRLSHGGGESGNTMLFVGELQWWTTDAELESVLSQYGRVKDLKFFDERA 279
Query: 325 SGKSKGYCHVEFFDPTAAAACKDGMNGHVFNGRACVVAFASPQTVKQMGAAYMNKNQVQV 146
SGKSKGYC VEF+DP AAAACK+ MNGHVFNGRACVVAFAS T+KQ+ Y+NK Q Q
Sbjct: 280 SGKSKGYCQVEFYDPAAAAACKESMNGHVFNGRACVVAFASQHTLKQLTTNYLNKTQAQA 339
Query: 145 QSQTQGRRPMXXXXXXXXXXXXXXXXXXRNY-NKVGWGRGGQGMSNRGQ 2
Q+Q+QGRRPM RNY NK+GWGRG QG+ NRGQ
Sbjct: 340 QAQSQGRRPM--NDGGGRAGGPSYQGGDRNYGNKMGWGRGNQGVPNRGQ 386
>ref|XP_006378268.1| hypothetical protein POPTR_0010s06150g [Populus trichocarpa]
gi|550329195|gb|ERP56065.1| hypothetical protein
POPTR_0010s06150g [Populus trichocarpa]
Length = 591
Score = 288 bits (737), Expect = 3e-75
Identities = 181/376 (48%), Positives = 211/376 (56%), Gaps = 8/376 (2%)
Frame = -2
Query: 1108 LDYGDEEYGGQKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHRSETLGG 929
+D+ +EE KMQ+QGSGAIPALAEEEL GEDDEYDDLYNDVNVGE FLQ+H SE
Sbjct: 1 MDFEEEE----KMQYQGSGAIPALAEEEL-GEDDEYDDLYNDVNVGENFLQMHGSEAPAP 55
Query: 928 ---VGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVG--GKDSKTGPSSYGEHNNNKGG 764
GNG Q T E GGSQ +A G GV GK S G + + E
Sbjct: 56 PATAGNGGFQ---TRNAHESRVETGGSQVLATSGAGVAVEGKYSNAG-AHFPEQKQ---- 107
Query: 763 YVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPSQISV 584
G G+E G+ GY
Sbjct: 108 --AGIGVEANDVGSIGY------------------------------------------- 122
Query: 583 KFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN--RSMVNENLSRP-LESGATMLFVGEL 413
G+ SS+ +G AG RG + R +VNEN RP +E+G T L+VGEL
Sbjct: 123 ---GDGSSVAQKGSAGPRGVPQMQVNQMNMNADVNRPVVNENQVRPPIENGPTTLYVGEL 179
Query: 412 HWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNGHVFN 233
HWWTTDAELE+V SQYGRVKEIKF+DERASGKSKGYC V+F++ AAAACK+GMN HVFN
Sbjct: 180 HWWTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFN 239
Query: 232 GRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXXXRNY 53
GR CVVAFAS QT+KQMGA+YM+K Q Q Q Q+QGR M RNY
Sbjct: 240 GRPCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQSGDGGRNY 299
Query: 52 NKVGWGRGGQGMSNRG 5
+ GWGRGGQG+ NRG
Sbjct: 300 GRGGWGRGGQGVLNRG 315
>ref|XP_002315647.1| RNA recognition motif-containing family protein [Populus trichocarpa]
gi|222864687|gb|EEF01818.1| RNA recognition
motif-containing family protein [Populus trichocarpa]
Length = 573
Score = 288 bits (737), Expect = 3e-75
Identities = 181/376 (48%), Positives = 211/376 (56%), Gaps = 8/376 (2%)
Frame = -2
Query: 1108 LDYGDEEYGGQKMQFQGSGAIPALAEEELMGEDDEYDDLYNDVNVGEGFLQVHRSETLGG 929
+D+ +EE KMQ+QGSGAIPALAEEEL GEDDEYDDLYNDVNVGE FLQ+H SE
Sbjct: 1 MDFEEEE----KMQYQGSGAIPALAEEEL-GEDDEYDDLYNDVNVGENFLQMHGSEAPAP 55
Query: 928 ---VGNGTLQAQRTEGPGSRAPEHGGSQEVAIPGVGVG--GKDSKTGPSSYGEHNNNKGG 764
GNG Q T E GGSQ +A G GV GK S G + + E
Sbjct: 56 PATAGNGGFQ---TRNAHESRVETGGSQVLATSGAGVAVEGKYSNAG-AHFPEQKQ---- 107
Query: 763 YVIGKGLEGRSSGNSGYPSAVSQGGRLPEMAPDAQARNEGFRGQATLPPKTGVDPSQISV 584
G G+E G+ GY
Sbjct: 108 --AGIGVEANDVGSIGY------------------------------------------- 122
Query: 583 KFAGEQSSLPDQGPAGVRGAXXXXXXXXXXXXN--RSMVNENLSRP-LESGATMLFVGEL 413
G+ SS+ +G AG RG + R +VNEN RP +E+G T L+VGEL
Sbjct: 123 ---GDGSSVAQKGSAGPRGVPQMQVNQMNMNADVNRPVVNENQVRPPIENGPTTLYVGEL 179
Query: 412 HWWTTDAELENVLSQYGRVKEIKFYDERASGKSKGYCHVEFFDPTAAAACKDGMNGHVFN 233
HWWTTDAELE+V SQYGRVKEIKF+DERASGKSKGYC V+F++ AAAACK+GMN HVFN
Sbjct: 180 HWWTTDAELESVASQYGRVKEIKFFDERASGKSKGYCQVDFYEAAAAAACKEGMNEHVFN 239
Query: 232 GRACVVAFASPQTVKQMGAAYMNKNQVQVQSQTQGRRPMXXXXXXXXXXXXXXXXXXRNY 53
GR CVVAFAS QT+KQMGA+YM+K Q Q Q Q+QGR M RNY
Sbjct: 240 GRPCVVAFASAQTLKQMGASYMSKTQGQPQPQSQGRGSMNDGMGRGGNANYQSGDGGRNY 299
Query: 52 NKVGWGRGGQGMSNRG 5
+ GWGRGGQG+ NRG
Sbjct: 300 GRGGWGRGGQGVLNRG 315