BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00011114
         (274 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   142   4e-32
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   142   4e-32
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       140   2e-31
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   139   4e-31
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   134   1e-29
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   132   4e-29
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   132   5e-29
emb|CBI26821.3| unnamed protein product [Vitis vinifera]              132   5e-29
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   132   5e-29
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   131   1e-28
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   130   2e-28
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   130   2e-28
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   129   6e-28
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   129   6e-28
emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]    129   6e-28
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   127   1e-27
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              127   1e-27
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   127   1e-27
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   127   1e-27
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   127   2e-27

>ref|XP_006469266.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 292

 Score =  142 bits (359), Expect = 4e-32
 Identities = 67/91 (73%), Positives = 75/91 (82%)
 Frame = -2

Query: 273 GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
           GVPA IPPHL+VKEYPDFMEK DKP+Y+SQ VIGKLFR VKDIAP  +CI  FT EVA++
Sbjct: 73  GVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR 132

Query: 93  CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            YD DME DGFED+IDDA   KG YD+KLGN
Sbjct: 133 SYDPDMEVDGFEDHIDDAIYHKGNYDYKLGN 163


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  142 bits (359), Expect = 4e-32
 Identities = 67/91 (73%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IPPHL+VKEYPDFMEK DKP+Y+SQ VIGKLFR VKDIAP  +CI  FT EVA++
Sbjct: 913  GVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHTSCIRLFTKEVARR 972

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFED+IDDA   KG YD+KLGN
Sbjct: 973  SYDPDMEVDGFEDHIDDAIYHKGNYDYKLGN 1003


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  140 bits (353), Expect = 2e-31
 Identities = 67/91 (73%), Positives = 74/91 (81%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IP  L+VKEYPDFMEKL+KP+Y+SQ VIGKLFREVKDIAP V  +  FT EVA +
Sbjct: 910  GVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVGSLHFFTKEVASR 969

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DMEYDGFEDYIDDAF  K  YD+KLGN
Sbjct: 970  SYDPDMEYDGFEDYIDDAFYYKSNYDYKLGN 1000


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  139 bits (350), Expect = 4e-31
 Identities = 65/91 (71%), Positives = 74/91 (81%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IP +L  +EYPDFMEK DKPSY+S+ VIGKLFREVKDIAP+ + I  FT +VA+Q
Sbjct: 909  GVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSSIRSFTSDVARQ 968

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            CYD DME DGFEDYIDDAF  K  YD+KLGN
Sbjct: 969  CYDPDMEVDGFEDYIDDAFYYKSNYDYKLGN 999


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  134 bits (338), Expect = 1e-29
 Identities = 61/91 (67%), Positives = 75/91 (82%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IP HL+VKE+PDFMEK D+PSY+S +VIGKLFR VKDIAP ++ I  FT +VA++
Sbjct: 906  GVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARR 965

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            CYD DME +GFEDY++DAF  K  YD+KLGN
Sbjct: 966  CYDCDMEVEGFEDYVEDAFYHKSNYDYKLGN 996


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  132 bits (333), Expect = 4e-29
 Identities = 64/91 (70%), Positives = 73/91 (80%)
 Frame = -2

Query: 273 GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
           GVPA IP HLHVKEYPDFMEK +KP+Y+SQ VIGKLFREVKD+AP    I  FT +VA Q
Sbjct: 441 GVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDIRSFTRDVAMQ 500

Query: 93  CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            YD+DME DGFEDY+ DAF  K +YDFKLG+
Sbjct: 501 SYDADMEVDGFEDYVRDAFYYKSQYDFKLGS 531


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  132 bits (332), Expect = 5e-29
 Identities = 63/91 (69%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            G+PA IPPHL VKEYPDFMEK DK +Y S RVIGKLFREVKDIAP+ +    FT EVA++
Sbjct: 895  GIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLFREVKDIAPQTSSFRSFTKEVARR 954

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFED+ID+AF  K  YD+KLGN
Sbjct: 955  SYDPDMEVDGFEDHIDEAFLHKTEYDYKLGN 985


>emb|CBI26821.3| unnamed protein product [Vitis vinifera]
          Length = 943

 Score =  132 bits (332), Expect = 5e-29
 Identities = 63/91 (69%), Positives = 73/91 (80%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IP HLHVKEYPDFMEK +KP+Y+SQ VIGKLFREVKD+AP    +  FT +VA Q
Sbjct: 731  GVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQ 790

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD+DME DGFEDY+ DAF  K +YDFKLG+
Sbjct: 791  SYDADMEVDGFEDYVRDAFYYKSQYDFKLGS 821


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  132 bits (332), Expect = 5e-29
 Identities = 63/91 (69%), Positives = 73/91 (80%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IP HLHVKEYPDFMEK +KP+Y+SQ VIGKLFREVKD+AP    +  FT +VA Q
Sbjct: 897  GVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDVAMQ 956

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD+DME DGFEDY+ DAF  K +YDFKLG+
Sbjct: 957  SYDADMEVDGFEDYVRDAFYYKSQYDFKLGS 987


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  131 bits (329), Expect = 1e-28
 Identities = 62/91 (68%), Positives = 71/91 (78%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IPP L+ KEYPDFMEK DK +Y S  VIG+LFREVKDIAP  + I  FT +VA +
Sbjct: 898  GVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIASFTRQVATK 957

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            CYD DME DGFEDY++DAF  KG YD+KLGN
Sbjct: 958  CYDPDMEVDGFEDYLEDAFYHKGNYDYKLGN 988


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  130 bits (326), Expect = 2e-28
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GV A IP HLHVKEYPDFMEK DKP+Y+S+ VIGKLFREVK+ AP +  I  FT +VA +
Sbjct: 893  GVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALK 952

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFE+Y+D+AF+ K  YDFKLGN
Sbjct: 953  SYDKDMEVDGFEEYVDEAFHYKANYDFKLGN 983


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  130 bits (326), Expect = 2e-28
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GV A IP HLHVKEYPDFMEK DKP+Y+S+ VIGKLFREVK+ AP +  I  FT +VA +
Sbjct: 883  GVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALK 942

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFE+Y+D+AF+ K  YDFKLGN
Sbjct: 943  SYDKDMEVDGFEEYVDEAFHYKANYDFKLGN 973


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  129 bits (323), Expect = 6e-28
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GV A IP HL+VKEYPDFMEK DKP+Y+S+ VIGKLFREVK+ AP +  I  FT +VA +
Sbjct: 892  GVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASK 951

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFE+Y+D+AF +K  YDFKLGN
Sbjct: 952  SYDKDMEVDGFEEYVDEAFYQKANYDFKLGN 982


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
            gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
            Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
            AltName: Full=RNA-directed RNA polymerase 1
            gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
            [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
            putative RNA-directed RNA polymerase [Arabidopsis
            thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
            polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  129 bits (323), Expect = 6e-28
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GV A IP HL+VKEYPDFMEK DKP+Y+S+ VIGKLFREVK+ AP +  I  FT +VA +
Sbjct: 892  GVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASK 951

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFE+Y+D+AF +K  YDFKLGN
Sbjct: 952  SYDKDMEVDGFEEYVDEAFYQKANYDFKLGN 982


>emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
          Length = 513

 Score =  129 bits (323), Expect = 6e-28
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = -2

Query: 273 GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
           GV A IP HL+VKEYPDFMEK DKP+Y+S+ VIGKLFREVK+ AP +  I  FT +VA +
Sbjct: 414 GVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASK 473

Query: 93  CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            YD DME DGFE+Y+D+AF +K  YDFKLGN
Sbjct: 474 SYDKDMEVDGFEEYVDEAFYQKANYDFKLGN 504


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  127 bits (320), Expect = 1e-27
 Identities = 60/91 (65%), Positives = 72/91 (79%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GV A IP HL+VKEYPDFMEK DKP+Y+S+ VIGKLFREVK+ AP +  I  FT +VA +
Sbjct: 893  GVAAEIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVALK 952

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME DGFE+Y+D+AF+ K  YDFKLGN
Sbjct: 953  SYDKDMEVDGFEEYVDEAFHYKANYDFKLGN 983


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  127 bits (320), Expect = 1e-27
 Identities = 63/91 (69%), Positives = 70/91 (76%)
 Frame = -2

Query: 273 GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
           GVPA IP +L VKEYPDFMEK DKP+Y+SQ VIGKLFREVKDIAP    I  FT +VA+Q
Sbjct: 697 GVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQ 756

Query: 93  CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            YD DME  GFEDY+ DAF  K  YD+KLGN
Sbjct: 757 SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGN 787


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  127 bits (320), Expect = 1e-27
 Identities = 63/91 (69%), Positives = 70/91 (76%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IP +L VKEYPDFMEK DKP+Y+SQ VIGKLFREVKDIAP    I  FT +VA+Q
Sbjct: 899  GVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQ 958

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD DME  GFEDY+ DAF  K  YD+KLGN
Sbjct: 959  SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGN 989


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  127 bits (320), Expect = 1e-27
 Identities = 63/91 (69%), Positives = 70/91 (76%)
 Frame = -2

Query: 273 GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
           GVPA IP +L VKEYPDFMEK DKP+Y+SQ VIGKLFREVKDIAP    I  FT +VA+Q
Sbjct: 432 GVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQ 491

Query: 93  CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
            YD DME  GFEDY+ DAF  K  YD+KLGN
Sbjct: 492 SYDPDMEVVGFEDYVSDAFYYKSEYDYKLGN 522


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  127 bits (318), Expect = 2e-27
 Identities = 60/91 (65%), Positives = 68/91 (74%)
 Frame = -2

Query: 273  GVPATIPPHLHVKEYPDFMEKLDKPSYQSQRVIGKLFREVKDIAPKVNCIPKFTWEVAKQ 94
            GVPA IPP LHVKEYPDFMEK DKP+Y+S  VIGKLFREVK+I+     I  FT  VA+ 
Sbjct: 906  GVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEISTSAGSITSFTKLVARD 965

Query: 93   CYDSDMEYDGFEDYIDDAFNKKGRYDFKLGN 1
             YD +ME DGF DY+DDAF  K  YD+KLGN
Sbjct: 966  SYDHEMEVDGFMDYVDDAFYHKTNYDYKLGN 996