BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00010066
         (733 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF81423.1| TIR-NBS-LRR-TIR type disease resistance protein [...   263   6e-82
gb|AFB73912.1| polyprotein [Citrus sinensis]                          276   4e-72
gb|AFB73911.1| polyprotein [Citrus sinensis]                          272   8e-71
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  270   4e-70
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              265   1e-68
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              263   4e-68
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              263   5e-68
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              263   5e-68
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         191   7e-68
emb|CAN71029.1| hypothetical protein VITISV_001707 [Vitis vinifera]   193   2e-66
emb|CAN60796.1| hypothetical protein VITISV_015834 [Vitis vinifera]   190   3e-66
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      184   5e-66
emb|CAN60396.1| hypothetical protein VITISV_018063 [Vitis vinifera]   186   1e-65
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   186   1e-64
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     191   5e-64
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    177   1e-62
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             243   5e-62
emb|CAN62181.1| hypothetical protein VITISV_044399 [Vitis vinifera]   191   2e-61
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]   167   2e-61
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   184   3e-61

>gb|ABF81423.1| TIR-NBS-LRR-TIR type disease resistance protein [Populus
           trichocarpa]
          Length = 1359

 Score =  263 bits (673), Expect(2) = 6e-82
 Identities = 128/146 (87%), Positives = 138/146 (94%), Gaps = 1/146 (0%)
 Frame = +3

Query: 297 LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
           LTT+R+VLAMCA FDLHLEQLDVKTAFLHGELEEEI+MLQPEGFAE GKENLVCRL KSL
Sbjct: 50  LTTIRVVLAMCAIFDLHLEQLDVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSL 109

Query: 477 YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGD-FIILLLYVDDMLVAGPSF 653
           YGLKQAPRCWYKRFDS+I SLGYNRLSSDHC+YYKRFE+ D FIILLLYVDDMLV GP+ 
Sbjct: 110 YGLKQAPRCWYKRFDSFIISLGYNRLSSDHCTYYKRFEENDVFIILLLYVDDMLVIGPNK 169

Query: 654 DRIQELKAELAREFDMKDLGPANKIL 731
           DR+QELKA+LAREFDMKDLGPA+KIL
Sbjct: 170 DRVQELKAQLAREFDMKDLGPAHKIL 195



 Score = 68.2 bits (165), Expect(2) = 6e-82
 Identities = 31/33 (93%), Positives = 32/33 (96%)
 Frame = +2

Query: 164 RKAIGNKWVYKIKRDSNDQVERYRARLVVKGYA 262
           RKAIGNKWVYKIKRD NDQVERYRARLV+KGYA
Sbjct: 1   RKAIGNKWVYKIKRDGNDQVERYRARLVLKGYA 33


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  276 bits (707), Expect = 4e-72
 Identities = 136/167 (81%), Positives = 147/167 (88%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEI+M
Sbjct: 860  VVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYM 919

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGFAE GKENLVCRL KSLYGLKQAPRCWYKRFDS+I SLGYNRLSSDHC+YYKRFE
Sbjct: 920  LQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFE 979

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
            D DFIILLLYVDDMLVAGP+ DRIQELKA+LAREF+MKDLGPANKIL
Sbjct: 980  DNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKIL 1026



 Score =  159 bits (402), Expect = 9e-37
 Identities = 75/84 (89%), Positives = 78/84 (92%)
 Frame = +2

Query: 11   AYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWV 190
            AYCLLTEDGEPSTF EA+NS D +LWMTAMQEEIEALH+NKTWELV LP GRKAIGNKWV
Sbjct: 782  AYCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWV 841

Query: 191  YKIKRDSNDQVERYRARLVVKGYA 262
            YKIKRD NDQVERYRARLVVKGYA
Sbjct: 842  YKIKRDGNDQVERYRARLVVKGYA 865


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  272 bits (696), Expect = 8e-71
 Identities = 135/167 (80%), Positives = 146/167 (87%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEI+M
Sbjct: 860  VVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYM 919

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGFAE GKENLVCRL KSLYGLKQAPR WYKRFDS+I SLGYNRLSSDHC+YYKRFE
Sbjct: 920  LQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFE 979

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
            D DFIILLLYVDDMLVAGP+ DRIQELKA+LAREF+MKDLGPANKIL
Sbjct: 980  DNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKIL 1026



 Score =  160 bits (405), Expect = 4e-37
 Identities = 75/84 (89%), Positives = 79/84 (94%)
 Frame = +2

Query: 11   AYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWV 190
            AYCLLTEDGEPSTF EA+NS D +LWMTAMQEEIEALH+NKTWELV LP+GRKAIGNKWV
Sbjct: 782  AYCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWV 841

Query: 191  YKIKRDSNDQVERYRARLVVKGYA 262
            YKIKRD NDQVERYRARLVVKGYA
Sbjct: 842  YKIKRDGNDQVERYRARLVVKGYA 865


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  270 bits (690), Expect = 4e-70
 Identities = 130/167 (77%), Positives = 146/167 (87%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTT+RIVLAMCA F+LHLEQLDVKTAFLHGELEEEI+M
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRIVLAMCAAFELHLEQLDVKTAFLHGELEEEIYM 915

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGF E+ +ENLVCRLTKSLYGLKQAPRCWYKRFDS+I SLGYNRLSSDHC+YYKRF+
Sbjct: 916  LQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCTYYKRFD 975

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
            DGDFIILLLYVDDMLV GP+ DR+QELKA+LAREFDMKDLGPANKIL
Sbjct: 976  DGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKIL 1022



 Score =  157 bits (397), Expect = 4e-36
 Identities = 74/87 (85%), Positives = 78/87 (89%)
 Frame = +2

Query: 2    SEAAYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGN 181
            S  AYCLL+EDGEPSTF EA+N  DASLWM AMQEEIEALHRN TWELV LP+GRKAIGN
Sbjct: 775  SHDAYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELVELPKGRKAIGN 834

Query: 182  KWVYKIKRDSNDQVERYRARLVVKGYA 262
            KWV+KIKRD NDQVERYRARLVVKGYA
Sbjct: 835  KWVFKIKRDGNDQVERYRARLVVKGYA 861


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  265 bits (677), Expect = 1e-68
 Identities = 128/167 (76%), Positives = 143/167 (85%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTT+R+VLAMCA  DLHLEQLDVKTAFLHGELEEEI+M
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGF E+GKENLVCRLTKSLYGLKQAPRCWYKRFDS+I SL YNRLSSDHC+YYKRF+
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFD 975

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
              DFIILLLYVDDMLV GP+ DR+QELKA+LAREFDMKDLGPANKIL
Sbjct: 976  GNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKIL 1022



 Score =  156 bits (394), Expect = 8e-36
 Identities = 73/87 (83%), Positives = 78/87 (89%)
 Frame = +2

Query: 2    SEAAYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGN 181
            S  AYCL+TE+GEPSTF EA+N  DAS WMTAM EE+EALHRNKTWELV LP+GRKAIGN
Sbjct: 775  SHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGN 834

Query: 182  KWVYKIKRDSNDQVERYRARLVVKGYA 262
            KWVYKIKRD NDQVERYRARLVVKGYA
Sbjct: 835  KWVYKIKRDGNDQVERYRARLVVKGYA 861


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  263 bits (673), Expect = 4e-68
 Identities = 127/167 (76%), Positives = 143/167 (85%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTT+R+VLAMCA  DLHLEQLDVKTAFLHGELEEEI+M
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGF E+GKENLVCRLTKSLYGLKQAPRCWYKRFDS+I SL YNRLSSDHC+YYKRF+
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFD 975

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
              DFIILLLYVDD+LV GP+ DR+QELKA+LAREFDMKDLGPANKIL
Sbjct: 976  GNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKIL 1022



 Score =  147 bits (372), Expect = 3e-33
 Identities = 68/84 (80%), Positives = 75/84 (89%)
 Frame = +2

Query: 11   AYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWV 190
            AYCL+ E+GEPSTF EA+N  DAS WMTA+ EE+EAL +NKTWELV LP+GRKAIGNKWV
Sbjct: 778  AYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNKWV 837

Query: 191  YKIKRDSNDQVERYRARLVVKGYA 262
            YKIKRD NDQVERYRARLVVKGYA
Sbjct: 838  YKIKRDGNDQVERYRARLVVKGYA 861


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  263 bits (672), Expect = 5e-68
 Identities = 127/167 (76%), Positives = 143/167 (85%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTT+R+VLAMCA  DLHLEQLDVKTAFLHGELEEEI+M
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGF E+GKENLVCRLTKSLYGLKQAPRCWYKRFDS+I SL Y+RLSSDHC+YYKRF+
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFD 975

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
              DFIILLLYVDDMLV GP+ DR+QELKA+LAREFDMKDLGPANKIL
Sbjct: 976  GNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKIL 1022



 Score =  156 bits (394), Expect = 8e-36
 Identities = 73/87 (83%), Positives = 78/87 (89%)
 Frame = +2

Query: 2    SEAAYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGN 181
            S  AYCL+TE+GEPSTF EA+N  DAS WMTAM EE+EALHRNKTWELV LP+GRKAIGN
Sbjct: 775  SHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGN 834

Query: 182  KWVYKIKRDSNDQVERYRARLVVKGYA 262
            KWVYKIKRD NDQVERYRARLVVKGYA
Sbjct: 835  KWVYKIKRDGNDQVERYRARLVVKGYA 861


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  263 bits (672), Expect = 5e-68
 Identities = 127/167 (76%), Positives = 143/167 (85%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTT+R+VLAMCA  DLHLEQLDVKTAFLHGELEEEI+M
Sbjct: 856  VVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYM 915

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGF E+GKENLVCRLTKSLYGLKQAPRCWYKRFDS+I SL Y+RLSSDHC+YYKRF+
Sbjct: 916  LQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFD 975

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
              DFIILLLYVDDMLV GP+ DR+QELKA+LAREFDMKDLGPANKIL
Sbjct: 976  GNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKIL 1022



 Score =  156 bits (394), Expect = 8e-36
 Identities = 73/87 (83%), Positives = 78/87 (89%)
 Frame = +2

Query: 2    SEAAYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGN 181
            S  AYCL+TE+GEPSTF EA+N  DAS WMTAM EE+EALHRNKTWELV LP+GRKAIGN
Sbjct: 775  SHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGN 834

Query: 182  KWVYKIKRDSNDQVERYRARLVVKGYA 262
            KWVYKIKRD NDQVERYRARLVVKGYA
Sbjct: 835  KWVYKIKRDGNDQVERYRARLVVKGYA 861


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  191 bits (486), Expect(2) = 7e-68
 Identities = 88/144 (61%), Positives = 113/144 (78%)
 Frame = +3

Query: 300  TTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSLY 479
            +++R+VL + A  D+ +EQ+DVKTAFLHG+L+EEI+M QPEGF  +GKE+ VCRL KSLY
Sbjct: 900  SSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLY 959

Query: 480  GLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFDR 659
            GLKQAPR WYK+F S +   GY + SSDHC +  R+ D DF+ILLLYVDDML+ G +  R
Sbjct: 960  GLKQAPRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASR 1019

Query: 660  IQELKAELAREFDMKDLGPANKIL 731
            IQELK EL++ F MKD+GPA +IL
Sbjct: 1020 IQELKQELSKSFSMKDMGPAKQIL 1043



 Score = 93.2 bits (230), Expect(2) = 7e-68
 Identities = 41/87 (47%), Positives = 61/87 (70%)
 Frame = +2

Query: 2    SEAAYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGN 181
            S + Y LLT+ GEP +++EA+ S     W  AMQEE+ +L+ N T+ELV  P+ RKA+ N
Sbjct: 796  SPSQYVLLTDGGEPESYEEAMESDQKRQWFEAMQEEMNSLYVNDTFELVKAPKNRKALKN 855

Query: 182  KWVYKIKRDSNDQVERYRARLVVKGYA 262
            +WVY++K +    V R++ARLVVKG++
Sbjct: 856  RWVYRVKHEEGTSVPRFKARLVVKGFS 882


>emb|CAN71029.1| hypothetical protein VITISV_001707 [Vitis vinifera]
          Length = 1286

 Score =  193 bits (490), Expect(2) = 2e-66
 Identities = 88/145 (60%), Positives = 118/145 (81%)
 Frame = +3

Query: 297  LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
            ++T+R+VL M A  +LHLEQLDVKTAFLHG+LEE+++M+QPEGF  +G+ENLVC+L KSL
Sbjct: 861  MSTIRLVLGMVAAENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSL 920

Query: 477  YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
            YGLKQAPR WYK+FD+++  +G+ R  +DHC Y+K F D  +IILLLYVDDML+AG   +
Sbjct: 921  YGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSF-DNSYIILLLYVDDMLIAGSDIE 979

Query: 657  RIQELKAELAREFDMKDLGPANKIL 731
            +I  LK +L+++F MKDLG A +IL
Sbjct: 980  KINNLKKQLSKQFAMKDLGAAKQIL 1004



 Score = 86.7 bits (213), Expect(2) = 2e-66
 Identities = 40/82 (48%), Positives = 58/82 (70%)
 Frame = +2

Query: 14   YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
            Y LLT+ G P  + EA+   ++S W  AM++E+++L  N+TWEL  LP G+KA+ NKWVY
Sbjct: 763  YLLLTDGGXPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWVY 822

Query: 194  KIKRDSNDQVERYRARLVVKGY 259
             IK + +D  +RY+ RLVVKG+
Sbjct: 823  XIKNE-HDGSKRYKXRLVVKGF 843


>emb|CAN60796.1| hypothetical protein VITISV_015834 [Vitis vinifera]
          Length = 1186

 Score =  190 bits (482), Expect(2) = 3e-66
 Identities = 87/145 (60%), Positives = 117/145 (80%)
 Frame = +3

Query: 297 LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
           ++T+ +VL M A  +LHLEQLDVKTAFLHG+LEE+++M+QPEGF  +G+ENLVC+L KSL
Sbjct: 553 MSTIILVLGMVAAKNLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSL 612

Query: 477 YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
           YGLKQAPR WYK+FD+++  +G+ R  +DHC Y+K F D  +IILLLYVDDML+AG   +
Sbjct: 613 YGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYFKSF-DNSYIILLLYVDDMLIAGSDIE 671

Query: 657 RIQELKAELAREFDMKDLGPANKIL 731
           +I  LK +L+++F MKDLG A +IL
Sbjct: 672 KINNLKKQLSKQFAMKDLGAAKQIL 696



 Score = 89.4 bits (220), Expect(2) = 3e-66
 Identities = 40/82 (48%), Positives = 60/82 (73%)
 Frame = +2

Query: 14  YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
           Y LLT+ GEP  + EA+   ++S W   M++E+++L  N+TWEL  LP G+KA+ NKWVY
Sbjct: 455 YLLLTDGGEPECYDEALQDENSSKWELNMKDEMDSLLGNQTWELTELPVGKKALHNKWVY 514

Query: 194 KIKRDSNDQVERYRARLVVKGY 259
           +IK + +D  +RY+ARLV+KG+
Sbjct: 515 RIKNE-HDGSKRYKARLVIKGF 535


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  184 bits (466), Expect(2) = 5e-66
 Identities = 86/145 (59%), Positives = 112/145 (77%)
 Frame = +3

Query: 297  LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
            ++++RIVL++ AT DL +EQ+DVKTAFLHG+LEEEI+M QP+GF  EGKE+ VCRL KSL
Sbjct: 845  MSSIRIVLSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSL 904

Query: 477  YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
            YGLKQAPR WYK+F+S +   GY + +SDHC + K+F + DFIILLLYVDD+L+ G    
Sbjct: 905  YGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDIS 964

Query: 657  RIQELKAELAREFDMKDLGPANKIL 731
             I  LK +L+  F MKD+G A +IL
Sbjct: 965  MINRLKKQLSESFAMKDMGAAKQIL 989



 Score = 94.7 bits (234), Expect(2) = 5e-66
 Identities = 39/82 (47%), Positives = 62/82 (75%)
 Frame = +2

Query: 14  YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
           Y  LT++GEP  + EA+ S +   W+ AMQ+E+++LH N T++LV LP+ +KA+ N+W+Y
Sbjct: 746 YVTLTDEGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKKALENRWIY 805

Query: 194 KIKRDSNDQVERYRARLVVKGY 259
           ++K++SN    RY+ARLVVKG+
Sbjct: 806 RVKQESNSTSPRYKARLVVKGF 827


>emb|CAN60396.1| hypothetical protein VITISV_018063 [Vitis vinifera]
          Length = 1294

 Score =  186 bits (473), Expect(2) = 1e-65
 Identities = 85/145 (58%), Positives = 115/145 (79%)
 Frame = +3

Query: 297  LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
            ++T+R+VL M A  +LHLEQLDVKTAFLHG+LEE+++M+QPEGF  +G+ENLVC+L KSL
Sbjct: 807  MSTIRLVLGMVAVENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLKKSL 866

Query: 477  YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
            YGLKQAPR WY +FD+++  +G+ R  +DHC Y+K F D  +IILLLYVDDML+ G   +
Sbjct: 867  YGLKQAPRQWYTKFDNFMHRIGFKRCEADHCCYFKSF-DNSYIILLLYVDDMLIVGSDIE 925

Query: 657  RIQELKAELAREFDMKDLGPANKIL 731
            +   LK +L+++F MKDLG A +IL
Sbjct: 926  KNNNLKKQLSKQFAMKDLGAAKQIL 950



 Score = 90.5 bits (223), Expect(2) = 1e-65
 Identities = 41/82 (50%), Positives = 60/82 (73%)
 Frame = +2

Query: 14  YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
           Y LLT+ GEP  + EA+   ++S W  AM++E+++L  N+TWEL  LP G+KA+ NKWVY
Sbjct: 709 YLLLTDGGEPECYDEALQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKWVY 768

Query: 194 KIKRDSNDQVERYRARLVVKGY 259
           +IK + +D  +RY+ RLVVKG+
Sbjct: 769 RIKNE-HDGSKRYKTRLVVKGF 789


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  186 bits (473), Expect(2) = 1e-64
 Identities = 87/145 (60%), Positives = 115/145 (79%)
 Frame = +3

Query: 297  LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
            +T++R +L++ A+ DL +EQLDVKTAFLHG+LEEEI+M QPEGF   GK+++VC+L KSL
Sbjct: 901  MTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSL 960

Query: 477  YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
            YGLKQAPR WY +FDS+++S  Y +  SD C Y+KRF + +FIILLLYVDDML+ G    
Sbjct: 961  YGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKG 1020

Query: 657  RIQELKAELAREFDMKDLGPANKIL 731
             I +LK +L++ FDMKDLGPA +IL
Sbjct: 1021 LIAKLKGDLSKSFDMKDLGPAQQIL 1045



 Score = 87.0 bits (214), Expect(2) = 1e-64
 Identities = 37/82 (45%), Positives = 63/82 (76%)
 Frame = +2

Query: 14   YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
            Y L+++D EP + +E ++ P+ +  M AMQEE+E+L +N T++LV LP+G++ +  KWV+
Sbjct: 802  YVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVF 861

Query: 194  KIKRDSNDQVERYRARLVVKGY 259
            K+K+D + ++ RY+ARLVVKG+
Sbjct: 862  KLKKDGDCKLVRYKARLVVKGF 883


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  191 bits (485), Expect(2) = 5e-64
 Identities = 91/144 (63%), Positives = 113/144 (78%)
 Frame = +3

Query: 300  TTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSLY 479
            T++R++L++ A +D+ +EQ+DVKTAFLHG+LEE+I+M QPEGF E GKENLVCRL KSLY
Sbjct: 874  TSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLY 933

Query: 480  GLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFDR 659
            GLKQ+PR WYK FD+Y+  +GY R   D C YY  FEDG  I+LLLYVDDML+A     +
Sbjct: 934  GLKQSPRQWYKPFDTYMLKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQ 993

Query: 660  IQELKAELAREFDMKDLGPANKIL 731
            IQ+LK +L  EFDMKDLG A KIL
Sbjct: 994  IQKLKKKLGAEFDMKDLGAAQKIL 1017



 Score = 80.5 bits (197), Expect(2) = 5e-64
 Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
 Frame = +2

Query: 5    EAAYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNK 184
            + +  L    G+P+T+++AI S +++ W+ AM EE+E+LH+N  WELV  P+ RK +G K
Sbjct: 770  DVSRALSISQGDPTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCK 829

Query: 185  WVYKIKRD-SNDQVERYRARLVVKGYA 262
            WV++ K     D    Y+ARLV KGY+
Sbjct: 830  WVFRKKEGIHEDDAITYKARLVAKGYS 856


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  177 bits (448), Expect(2) = 1e-62
 Identities = 83/145 (57%), Positives = 111/145 (76%)
 Frame = +3

Query: 297  LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
            +T++R +L++ A+ DL +EQLDVKTAFLHG+LEEEI+M Q EGF   GK+++VC+L KSL
Sbjct: 902  MTSIRTILSIAASLDLEVEQLDVKTAFLHGDLEEEIYMEQGEGFEVSGKKHMVCKLNKSL 961

Query: 477  YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
            YGLKQAPR WYK+FDS+++S  Y    S  C Y+KRF D +FIILLLY D ML+ G   +
Sbjct: 962  YGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFIILLLYTDYMLIVGKDKE 1021

Query: 657  RIQELKAELAREFDMKDLGPANKIL 731
             I +L+ + ++ FDMKDLGPA +IL
Sbjct: 1022 LIAKLRKDFSKSFDMKDLGPAKQIL 1046



 Score = 90.5 bits (223), Expect(2) = 1e-62
 Identities = 38/82 (46%), Positives = 60/82 (73%)
 Frame = +2

Query: 14   YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
            Y L+  +GEP   +E ++ P+ S WM AM EE+ +L +N T++LV LP+G++ +  KWV+
Sbjct: 803  YVLIKYEGEPENLKEVLSHPEKSQWMKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKWVF 862

Query: 194  KIKRDSNDQVERYRARLVVKGY 259
            K+K+D N ++ RY+ARLVVKG+
Sbjct: 863  KLKKDGNGKLVRYKARLVVKGF 884


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  243 bits (620), Expect = 5e-62
 Identities = 117/167 (70%), Positives = 139/167 (83%)
 Frame = +3

Query: 231  IVQDWWSKDMLXXXXXXXXXXXLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFM 410
            +V+ +  K+ +           LTTVR+VLAMCATF+LHLEQLDVKTAFLHG+LEEEI+M
Sbjct: 849  VVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFNLHLEQLDVKTAFLHGDLEEEIYM 908

Query: 411  LQPEGFAEEGKENLVCRLTKSLYGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFE 590
            LQPEGF ++  +NLVCRL KSLYGLKQAPRCWYKRFDS+I  LGYNRL++D C+Y+KRF 
Sbjct: 909  LQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRFG 968

Query: 591  DGDFIILLLYVDDMLVAGPSFDRIQELKAELAREFDMKDLGPANKIL 731
              +F+ILLLYVDDMLVAGP+ D I ELKA+LAREF+MKDLGPANKIL
Sbjct: 969  KDNFVILLLYVDDMLVAGPNKDHIDELKAQLAREFEMKDLGPANKIL 1015



 Score =  149 bits (375), Expect = 1e-33
 Identities = 70/84 (83%), Positives = 75/84 (89%)
 Frame = +2

Query: 11   AYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWV 190
            AYCLLTEDGEPSTFQEAINS D S W  AMQEEIEALH+N TW+LV LPQGRK IGNKWV
Sbjct: 771  AYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWV 830

Query: 191  YKIKRDSNDQVERYRARLVVKGYA 262
            +KIKR+ +DQVERYRARLVVKGYA
Sbjct: 831  FKIKRNGDDQVERYRARLVVKGYA 854


>emb|CAN62181.1| hypothetical protein VITISV_044399 [Vitis vinifera]
          Length = 1264

 Score =  191 bits (486), Expect(2) = 2e-61
 Identities = 88/145 (60%), Positives = 117/145 (80%)
 Frame = +3

Query: 297  LTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSL 476
            ++T+R+VL M A  +LHLEQLDVKTAFLHG+LEE+++M+QPEGF  +G+ENLVC+L KSL
Sbjct: 839  MSTIRLVLGMVAVENLHLEQLDVKTAFLHGDLEEDLYMIQPEGFIVQGQENLVCKLRKSL 898

Query: 477  YGLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFD 656
            YGLKQAPR WYK+FD+++  +G+ R  +DHC Y K F D  +IILLLYVDDML+AG   +
Sbjct: 899  YGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSF-DNSYIILLLYVDDMLIAGSDIE 957

Query: 657  RIQELKAELAREFDMKDLGPANKIL 731
            +I  LK +L+++F MKDLG A +IL
Sbjct: 958  KINNLKKQLSKQFAMKDLGAAKQIL 982



 Score = 71.2 bits (173), Expect(2) = 2e-61
 Identities = 35/82 (42%), Positives = 50/82 (60%)
 Frame = +2

Query: 14  YCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVY 193
           Y LLT+ GEP  + EA+   ++S W  AM++E+++L  N+TWEL  LP G+KA+ NKW  
Sbjct: 755 YLLLTDGGEPECYBEALQDENSSKWELAMKDEMDSLLGNQTWELTELPVGKKALHNKW-- 812

Query: 194 KIKRDSNDQVERYRARLVVKGY 259
                        +ARLVVKG+
Sbjct: 813 -------------KARLVVKGF 821


>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
          Length = 595

 Score =  167 bits (423), Expect(2) = 2e-61
 Identities = 82/145 (56%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
 Frame = +3

Query: 300 TTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSLY 479
           T++R VL + A FD+ LEQ+DV+T FLHG+LEE ++M+QPEGF + G+E+LVC+L KSLY
Sbjct: 253 TSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEELVYMVQPEGFIQPGQEHLVCKLRKSLY 312

Query: 480 GLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRF-EDGDFIILLLYVDDMLVAGPSFD 656
           GLKQ+PR WYK FDSYI  +GY R   D   Y K   +D  FI LLLYVDDML+A  S  
Sbjct: 313 GLKQSPRQWYKCFDSYIIRIGYKRCEYDCFVYVKSLDDDSSFIFLLLYVDDMLIAAKSMV 372

Query: 657 RIQELKAELAREFDMKDLGPANKIL 731
            + +LK+ L++EFDMK+L  A KI+
Sbjct: 373 EVNKLKSLLSKEFDMKELDAAKKII 397



 Score = 95.5 bits (236), Expect(2) = 2e-61
 Identities = 45/85 (52%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +2

Query: 11  AYCLLTEDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWV 190
           +Y L+T   +P TFQEAI++ + S WM AM EEI+ LH+N+TW+LV  P+G++AIG KWV
Sbjct: 151 SYALITSSKDPITFQEAIHNQEKSRWMGAMVEEIQFLHKNQTWDLVEPPEGKRAIGCKWV 210

Query: 191 YKIKRD-SNDQVERYRARLVVKGYA 262
           YK K   S  + E+++ARLV KGY+
Sbjct: 211 YKKKEAISKKEGEKFKARLVAKGYS 235


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  184 bits (468), Expect(2) = 3e-61
 Identities = 93/144 (64%), Positives = 109/144 (75%)
 Frame = +3

Query: 300  TTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIFMLQPEGFAEEGKENLVCRLTKSLY 479
            T++R++LA+ A  +L LEQLDVKTAFLHGELEEEI+M QP+GF   GKEN VC+L KSLY
Sbjct: 883  TSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLY 942

Query: 480  GLKQAPRCWYKRFDSYIRSLGYNRLSSDHCSYYKRFEDGDFIILLLYVDDMLVAGPSFDR 659
            GLKQ+PR WYKRFDSY+  LGY R S D C YY R  D  FI L+LYVDDML+A      
Sbjct: 943  GLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYD 1002

Query: 660  IQELKAELAREFDMKDLGPANKIL 731
            IQ+LK  L+ EF+MKDLG A KIL
Sbjct: 1003 IQKLKGLLSAEFEMKDLGAARKIL 1026



 Score = 77.8 bits (190), Expect(2) = 3e-61
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = +2

Query: 29   EDGEPSTFQEAINSPDASLWMTAMQEEIEALHRNKTWELVSLPQGRKAIGNKWVYKIKRD 208
            +  EPST++EAI S D+  W  AM +E+E+LH+N+TW+LV  P GRK I  KWV+K K  
Sbjct: 787  DTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEG 846

Query: 209  -SNDQVERYRARLVVKGY 259
             S  +  +Y+AR+V +G+
Sbjct: 847  ISPAEGVKYKARVVARGF 864