BLASTX nr result
ID: Cocculus22_contig00008921
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00008921
(1712 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 233 2e-58
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 232 3e-58
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 229 2e-57
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 224 1e-55
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 219 3e-54
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 219 4e-54
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 218 9e-54
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 212 4e-52
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 211 6e-52
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 211 8e-52
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana] 211 1e-51
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 208 7e-51
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 194 8e-47
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 193 2e-46
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 192 4e-46
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 189 4e-45
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 189 4e-45
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub... 185 5e-44
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 184 8e-44
ref|XP_007017131.1| Uncharacterized protein TCM_033752 [Theobrom... 183 2e-43
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 233 bits (594), Expect = 2e-58
Identities = 141/456 (30%), Positives = 222/456 (48%), Gaps = 23/456 (5%)
Frame = +3
Query: 90 TGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYI 269
+GQLPV++LGLP+I +LS DC PL+ +++ W ++ LSYAGRL L+ SVL S
Sbjct: 764 SGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICN 823
Query: 270 FWTGAFPIPYSVCSKLESLMGSFLHGKSKLR----LISWATICRPLEEGGLGIRRIKDMN 437
FW AF +P +LE + +FL +++ ISW +C+P +EGGLG+R +K+ N
Sbjct: 824 FWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEAN 883
Query: 438 KAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIW-TATIPNDVSWVYRRILKIRNQFAHH 614
KL+W I S SLWV+W+ LRN S W + SW+++++LK R
Sbjct: 884 DVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTL 943
Query: 615 CFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV----REAGYWNSP 782
VGNG T FW W G LL+ G+ + I RR T++E R+ + N
Sbjct: 944 SKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLIDLGISRRMTVEEAWTNRRQRRHRNDV 1003
Query: 783 PS-SSPMVRTAWRQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEW 950
+ ++ +W + ED+ +W S FS W R W
Sbjct: 1004 YNVIEDALKKSW-------DTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPW 1056
Query: 951 TELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSRCELCWAGVESEDHLFFECP 1124
+++WF PK SF W +LPT D++ + G + C C +E+ DHLFF C
Sbjct: 1057 HKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCS 1116
Query: 1125 FSSEVWMRIKVKCWRNVQVVRGRFQESQT--------ILRSFGLNRADGVIRKLCYTVTV 1280
F+S +W V + RG F+ T + + +R + +R+ + T+
Sbjct: 1117 FTSVIW----------VDLARGIFKTQYTSHWQSIIEAITNSQHHRVEWFLRRYVFQATI 1166
Query: 1281 HFIWWERNMRLFNKGWRSATRLAEEIIQLVHQKVST 1388
+ +W ERN R + +A++L I + + ++S+
Sbjct: 1167 YIVWRERNGRRHGEPPNTASQLVGWIDKQIRNQLSS 1202
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 232 bits (592), Expect = 3e-58
Identities = 139/452 (30%), Positives = 224/452 (49%), Gaps = 17/452 (3%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G+LPV++LGLP++ +L+ +D +PL+ R++ W ++ LS+AGRL L+ SVL S F
Sbjct: 486 GKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLINSVLWSITNF 545
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHGKSKLR----LISWATICRPLEEGGLGIRRIKDMNK 440
W AF +P +++ + + L +L +SW IC+P +EGGLG++ +++ NK
Sbjct: 546 WMNAFRLPRECINEINRISSALLWSGPELNPKKAKVSWDEICKPKKEGGLGLQSLREANK 605
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHC 617
KL+W + S + SLWV+W L+ S W+ + + SW++RR+LK R C
Sbjct: 606 VSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFC 665
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSP 797
V NG T FW W +G L++ G + I R T+ E W+
Sbjct: 666 KIEVNNGVNTSFWFDNWSEKGPLINLTGARGAIDMGISRHMTLAEA-----WSRRRRKRH 720
Query: 798 MVRTAWRQFQQI-----PKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWT 953
V +F++I + ED +W FS W IR + W
Sbjct: 721 RVEIL-NEFEEILLQKYQHRNIELEDAILWRGKEDVFKARFSTKDTWNHIRTSSNQRAWH 779
Query: 954 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSRCELCWAGVESEDHLFFECPF 1127
+ VWF PK SF W + ++L T D++ + G + C C + +E+ DHLFF+C +
Sbjct: 780 KGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGTPTTCVFCSSPMETRDHLFFQCCY 839
Query: 1128 SSEVWMRIKVKCWRNVQVVRGRFQESQTI--LRSFGLNRADGVIRKLCYTVTVHFIWWER 1301
SSE+W I +NV R + S + + +R + + + V++H IW ER
Sbjct: 840 SSEIWTSIA----KNVYKDRFSTKWSAVVNYISDSQPDRIQSFLSRYTFQVSIHSIWRER 895
Query: 1302 NMRLFNKGWRSATRLAEEIIQLVHQKVSTSKK 1397
N R + RSA+ L +I + + ++ST KK
Sbjct: 896 NSRRHGEKSRSASNLIRQIDKTIRNQLSTIKK 927
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 229 bits (585), Expect = 2e-57
Identities = 129/418 (30%), Positives = 207/418 (49%), Gaps = 12/418 (2%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
GQLPV++LGLP++ +L+ AD +PL+ +++ W + S+AGR L+KSVL S F
Sbjct: 412 GQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNF 471
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHGKSKL----RLISWATICRPLEEGGLGIRRIKDMNK 440
W AF +P +++ L SFL S++ ISW +C+P EGGLG+R +K+ N
Sbjct: 472 WLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEAND 531
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHC 617
KL+W I S+ SLW +W+ +R SIW+ + SW++R+ILKIR+
Sbjct: 532 VSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTSMGSWIWRKILKIRDVAKSFS 591
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSP 797
VGNG++ FW W G L+DT G+ + IPR A++ + +S
Sbjct: 592 RVEVGNGESASFWYDHWSAHGRLIDTVGDKGTIDLGIPREASVADAWTRRSRRRHRTSLL 651
Query: 798 MVRTAWRQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELVWF 968
+Q+I D ED +W + FS W I+ W + VWF
Sbjct: 652 NEIEEMMAYQRIHH--SDAEDTVLWRGKNDVFKPHFSTRDTWHLIKATSSTVSWHKGVWF 709
Query: 969 YDKIPKCSFTCWRMLLSKLPTKDKLTRFGA----QSRCELCWAGVESEDHLFFECPFSSE 1136
PK + W + ++LPT D++ ++ + C LC ++ +HLFF C ++S
Sbjct: 710 RHATPKYALCTWLAIHNRLPTGDRMLKWNSSGSVSGNCVLCTNNSKTLEHLFFSCSYAST 769
Query: 1137 VWMRIKVKCWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERNMR 1310
VW + W+ R+ T + + +R +G + + + T++ +W ERN R
Sbjct: 770 VWAALAKGIWKTRYST--RWSHLLTHISTHFQDRVEGFLTRYIFQATIYHVWRERNGR 825
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 224 bits (570), Expect = 1e-55
Identities = 142/441 (32%), Positives = 216/441 (48%), Gaps = 21/441 (4%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G LPVK+LGLP++ +++ +D PLV ++ W + LS+AGRL+L+KSVL S F
Sbjct: 912 GTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNF 971
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHG----KSKLRLISWATICRPLEEGGLGIRRIKDMNK 440
W F +P + ++E + +FL +K I+W+ +C+ EEGGLG++ +K+ N+
Sbjct: 972 WLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANE 1031
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHC 617
L KL+W I S++ SLWV+W++ +R + W+ + SW++R+ILK R++
Sbjct: 1032 VSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGLGSWLWRKILKQRDKARLFH 1091
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV--------REAGYW 773
V +G T FW W P G L G + IP AT+ EV A +
Sbjct: 1092 RMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTIDLGIPNNATVAEVMNTHRRKRHRADFL 1151
Query: 774 NSPPSSSPMVRTAWRQFQQIPKLGCDEEDQFVWSPCPSGLFSVASAWEQIRHHYDVWEWT 953
N S + R R L +ED F S FS + W+QIR +W
Sbjct: 1152 NQIKSQIELARQD-RSTDGDRSLWKQKEDTFKSS------FSSSKTWQQIRSISLRCDWY 1204
Query: 954 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSRCELCWAGVESEDHLFFECPF 1127
VWF PK SF W ++L T DK+ ++ GA+ C C +E+ DHLFF CP+
Sbjct: 1205 RGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWNSGARYDCVFCGEELETRDHLFFSCPY 1264
Query: 1128 SSEVWMRIK--VKCWRNV----QVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFI 1289
SS VW + + RN+ + S+ L F L A + ++H +
Sbjct: 1265 SSHVWFSLTKGLLNGRNILNWNLITPHLLDSSRPYLHVFTLRYA--------FQASIHSL 1316
Query: 1290 WWERNMRLFNKGWRSATRLAE 1352
W ERN R + A +LA+
Sbjct: 1317 WRERNCRRHGETAIPAAKLAK 1337
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 219 bits (558), Expect = 3e-54
Identities = 137/452 (30%), Positives = 218/452 (48%), Gaps = 21/452 (4%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
GQLPV++LGLP++ +L+ D +PL ++ W ++ LS+AGRL L+ SVL S+ F
Sbjct: 170 GQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMNF 229
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHGKSKLR----LISWATICRPLEEGGLGIRRIKDMNK 440
W AF +P + ++ S+ +FL +L +SW IC+P +EGGLG+R + + N
Sbjct: 230 WMSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANV 289
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV--SWVYRRILKIRNQFAHH 614
+ KL+W + S+ SLWV+W L+ S W+ T PN SW+++++LK R
Sbjct: 290 VSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLT-PNSSLGSWMWKKMLKYRETAKPF 348
Query: 615 CFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSS 794
V NG T FW W G L+D G+ ++ I R T+ E W++
Sbjct: 349 SRVEVNNGARTSFWFDNWSGMGHLMDVTGQRGQIDLGISRNKTVAEA-----WSNRRRRK 403
Query: 795 PM------VRTAWRQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWE 947
+ A Q Q L ED +W FS W Q+R +
Sbjct: 404 HRTEQLNDIEAALNQKYQTRNL--LREDATLWRGKGDVFKTSFSTKDTWNQVRKKSNEVA 461
Query: 948 WTELVWFYDKIPKCSFTCWRMLLSKLPT--KDKLTRFGAQSRCELCWAGVESEDHLFFEC 1121
W + VWF PK F W L ++L T + +L G+ +C C +E+ DHLFF C
Sbjct: 462 WYKGVWFSHSTPKYQFCTWLALRNRLSTGYRMQLWNNGSDVKCTFCSTSIETRDHLFFSC 521
Query: 1122 PFSSEVWMRIKVKCWRNVQVVRGRFQ-ESQTILRSFGLNRADGV---IRKLCYTVTVHFI 1289
++S +W I V++ RF + QTI+ + D + + + + +TVH +
Sbjct: 522 SYASAIWTAIA------KNVLQHRFSTDWQTIVNYISETQTDRIRSFLSRYIFQLTVHTV 575
Query: 1290 WWERNMRLFNKGWRSATRLAEEIIQLVHQKVS 1385
W ERN R + R++ L + + + ++S
Sbjct: 576 WKERNDRRHGEEPRTSANLISWMDKQIRNQLS 607
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 219 bits (557), Expect = 4e-54
Identities = 143/453 (31%), Positives = 214/453 (47%), Gaps = 19/453 (4%)
Frame = +3
Query: 141 LSIADCAPLVGMFAR-KLEGWQAKILSYAGRLELVKSVLQSSYIFWTGAFPIPYSVCSKL 317
L + C +V MF+R K+ W A+ LSYAGRL L+ SVL S FW GAF +P ++
Sbjct: 30 LDVTHCN-IVTMFSRQKICSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRDCIREI 88
Query: 318 ESLMGSFLHGKSKLRL----ISWATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIYSSKK 485
+ + ++L +L I+WA +C+P EEGGLG+R +K+ N KL+W I S
Sbjct: 89 DKMCSAYLWSGGELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDVCCLKLIWRIISHAD 148
Query: 486 SLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHCFNLVGNGDATKFWLH 662
SLWV+WI S L+ S W + SW++R+ILK R+ C + NG T FW
Sbjct: 149 SLWVKWIQSSLLKKVSFWAVRENTSLGSWMWRKILKFRDIARTLCKVEINNGARTSFWYD 208
Query: 663 RWHPQGMLLDTFGENCRLFTRIPRRATIKEV-----REAGYWNSPPSSSPMVRTAWRQFQ 827
W G L+D+ G+ + I + AT+ E R N + +W
Sbjct: 209 DWSDLGRLIDSAGDRGAIDLGINKHATVVEAWGNRRRRRHRTNFLNRVEERLILSWNSRN 268
Query: 828 QIPKLGCDEEDQFVWSPCPS---GLFSVASAWEQIRHHYDVWEWTELVWFYDKIPKCSFT 998
Q ED+ +W + +FS W IR + W + VWF IPK +F
Sbjct: 269 Q-------AEDRALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFC 321
Query: 999 CWRMLLSKLPTKDKLT--RFGAQSRCELCWAGVESEDHLFFECPFSSEVWMRIKVKCWRN 1172
W + ++L T D++T G + C LC +ES DHLFF CPF++E+W + +
Sbjct: 322 MWLAVHNRLSTGDRMTLWNMGVDATCILCNKALESRDHLFFSCPFATEIWEPLAKTIYNT 381
Query: 1173 VQVVRGRFQESQTILRSFGLN---RADGVIRKLCYTVTVHFIWWERNMRLFNKGWRSATR 1343
+ + QTI+ + N R G + + VT++ +W ERN R S++R
Sbjct: 382 C-----FYTDWQTIINNVSRNWPDRIAGFLARCILQVTIYTLWRERNERKHGASPNSSSR 436
Query: 1344 LAEEIIQLVHQKVSTSKKLLSNSLDGEFLAQFW 1442
L I + + + K+ D F Q W
Sbjct: 437 LISWIDKHIRNHLMAIKQSGDRRFDRGF--QVW 467
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 218 bits (554), Expect = 9e-54
Identities = 140/446 (31%), Positives = 209/446 (46%), Gaps = 16/446 (3%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G LP+++LGLP++ KL IA+ PL+ + W K LS+AGR++L+ SV+ S F
Sbjct: 758 GTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINF 817
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHG----KSKLRLISWATICRPLEEGGLGIRRIKDMNK 440
W F +P ++ESL FL ++K +SWA +C P EGGLG+RR+ + NK
Sbjct: 818 WMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNK 877
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAHHCF 620
+L+W ++ +K SLW W H L S W SW ++R+L +R
Sbjct: 878 TLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLV 937
Query: 621 NLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSPM 800
VGNG +W W G L G+ R+P A + W P S S
Sbjct: 938 CKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAP 997
Query: 801 VRTAWRQF--QQIPKLGCDEEDQFVWSP----CPSGLFSVASAWEQIRHHYDVWEWTELV 962
+ +P ++ D++ WS C FS A WE IR V W +
Sbjct: 998 AKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQG--FSAAKTWEAIRPKATVKSWASSI 1055
Query: 963 WFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSRCELCWAGVESEDHLFFECPFSSE 1136
WF +PK +F W L++L T+ +L +G C LC ES DHL C FS++
Sbjct: 1056 WFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQ 1115
Query: 1137 VWMRIKVKCWRNVQVVRGRFQESQTILRSF---GLNRADGVIRKLCYTVTVHFIWWERNM 1307
VW + +R + R R S + L S+ A ++RK+ V V+ +W +RN
Sbjct: 1116 VWRLV----FRRI-CPRQRLFSSWSELLSWVRQSSPEAPPLLRKIVSQVVVYNLWRQRNN 1170
Query: 1308 RLFNKGWRSATRLAEEII-QLVHQKV 1382
L N + RLA +I +LV +++
Sbjct: 1171 LLHN-----SLRLAPAVIFKLVDREI 1191
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 212 bits (540), Expect = 4e-52
Identities = 127/445 (28%), Positives = 201/445 (45%), Gaps = 13/445 (2%)
Frame = +3
Query: 87 ITGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSY 266
+ G P ++LGLP++ KL +D + L+ A + W K LS+AGRL+L+ SV+ S+
Sbjct: 755 VNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTV 814
Query: 267 IFWTGAFPIPYSVCSKLESLMGSFLHGKSKLRL----ISWATICRPLEEGGLGIRRIKDM 434
FW +F +P +E + FL G R +SW C P EGGLG+R
Sbjct: 815 NFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTW 874
Query: 435 NKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAHH 614
NK +L+W +++ + SLWV W H+ LR+ + W A + SW+++ IL +R
Sbjct: 875 NKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRF 934
Query: 615 CFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPS-- 788
VGNG +W W G L++ G + T I A + E + W P +
Sbjct: 935 LRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLTGIHESAVVTEASSSTGWILPSART 994
Query: 789 -SSPMVRTAWRQFQQIPKLGCDEEDQFVW--SPCPSGLFSVASAWEQIRHHYDVWEWTEL 959
++ + G ED + W S FS WE +R W
Sbjct: 995 RNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAA 1054
Query: 960 VWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFGAQ--SRCELCWAGVESEDHLFFECPFSS 1133
VW+ IPK +F W L++LP + + T + S C +C E+ DHLF C S
Sbjct: 1055 VWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGS 1114
Query: 1134 EVWMRIKVKCWRNVQVVRGRFQESQTILRSFGLNRA--DGVIRKLCYTVTVHFIWWERNM 1307
+W ++ + R+ F+E + I+ N+ G ++KL + IW ERN
Sbjct: 1115 LIWQQVLARFGRSQM-----FREWKDIIEWMLSNQGSFSGTLKKLAVQTAIFHIWKERNS 1169
Query: 1308 RLFNKGWRSATRLAEEIIQLVHQKV 1382
RL + S T + ++I + + +
Sbjct: 1170 RLHSAMSASHTAIFKQIDRSIRDSI 1194
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 211 bits (538), Expect = 6e-52
Identities = 136/442 (30%), Positives = 203/442 (45%), Gaps = 12/442 (2%)
Frame = +3
Query: 24 MTLIYKITNKSWGF*CKNMKNITGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQ 203
+ L +IT+ ++GF G P+++LGLP++ KL IAD PL+ + +L W
Sbjct: 602 LDLSERITSAAYGF-------PAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654
Query: 204 AKILSYAGRLELVKSVLQSSYIFWTGAFPIPYSVCSKLESLMGSFLHGKS----KLRLIS 371
+K LS+AGR +L+ SV+ FW F +P K+ESL FL S K +S
Sbjct: 655 SKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVS 714
Query: 372 WATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATI 551
W C P EGGLG R + NK L +L+W ++ SLW QW L + S W
Sbjct: 715 WVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNA 774
Query: 552 PNDVSWVYRRILKIRNQFAHHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIP 731
W ++ +L +R VGNG FW W G L+ G+ RIP
Sbjct: 775 LQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIP 834
Query: 732 RRATIKEVREAGYWNSPPSSSPMVRTAWRQFQQIPKLG-CDEEDQFVWSPCPSGL----F 896
A + + + W P S S + +P D + W C + F
Sbjct: 835 FSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSW--CVDDVDCQGF 892
Query: 897 SVASAWEQIRHHYDVWEWTELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSRC 1070
S A WE +R V W + VWF +PK +F W L++LPT+ +L +G + + C
Sbjct: 893 SAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAEC 952
Query: 1071 ELCWAGVESEDHLFFECPFSSEVWMRIKVK-CWRNVQVVRGRFQESQTILRSFGLNRADG 1247
LC E+ DHL C FSS+VW + ++ C R Q + + E + R A
Sbjct: 953 CLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPR--QRLLCTWAELLSWTRQ-STAAAPS 1009
Query: 1248 VIRKLCYTVTVHFIWWERNMRL 1313
++RK+ + V+ +W +RN+ L
Sbjct: 1010 LLRKVVAQLVVYNLWRQRNLVL 1031
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 211 bits (537), Expect = 8e-52
Identities = 136/442 (30%), Positives = 202/442 (45%), Gaps = 12/442 (2%)
Frame = +3
Query: 24 MTLIYKITNKSWGF*CKNMKNITGQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQ 203
+ L +IT+ ++GF G P+++LGLP++ KL IAD PL+ + +L W
Sbjct: 602 LDLSERITSAAYGF-------PAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWV 654
Query: 204 AKILSYAGRLELVKSVLQSSYIFWTGAFPIPYSVCSKLESLMGSFLHGKS----KLRLIS 371
+K LS+AGR +L+ SV+ FW F +P K+ESL FL S K +S
Sbjct: 655 SKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVS 714
Query: 372 WATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATI 551
W C P EGGLG R + NK L +L+W ++ SLW QW L + S W
Sbjct: 715 WVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNA 774
Query: 552 PNDVSWVYRRILKIRNQFAHHCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIP 731
W ++ +L +R VGNG FW W G L+ G+ RIP
Sbjct: 775 LQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIP 834
Query: 732 RRATIKEVREAGYWNSPPSSSPMVRTAWRQFQQIPKLG-CDEEDQFVWSPCPSGL----F 896
A + + + W P S S + +P D + W C + F
Sbjct: 835 FSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSW--CVDDVDCQGF 892
Query: 897 SVASAWEQIRHHYDVWEWTELVWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSRC 1070
S A WE +R V W VWF +PK +F W L++LPT+ +L +G + + C
Sbjct: 893 SAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAEC 952
Query: 1071 ELCWAGVESEDHLFFECPFSSEVWMRIKVK-CWRNVQVVRGRFQESQTILRSFGLNRADG 1247
LC E+ DHL C FSS+VW + ++ C R Q + + E + R A
Sbjct: 953 CLCSFDTETRDHLLLLCDFSSQVWRMVFLRLCPR--QRLLCTWAELLSWTRQ-STAAAPS 1009
Query: 1248 VIRKLCYTVTVHFIWWERNMRL 1313
++RK+ + V+ +W +RN+ L
Sbjct: 1010 LLRKVVAQLVVYNLWRQRNLVL 1031
>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
Length = 438
Score = 211 bits (536), Expect = 1e-51
Identities = 136/415 (32%), Positives = 200/415 (48%), Gaps = 17/415 (4%)
Frame = +3
Query: 99 LPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIFWT 278
LP+++LGLP++ KL I++ PLV KL W K LS+AGRL+L+ SV+ +FW
Sbjct: 31 LPIRYLGLPLMSRKLKISEFEPLVVKIKAKLNFWAVKSLSFAGRLQLLSSVISGIVVFWM 90
Query: 279 GAFPIPYSVCSKLESLMGSFL-------HGKSKLRLISWATICRPLEEGGLGIRRIKDMN 437
F +P ++ES+ FL H K+K +SW+T+C P EGGLG+R+ + N
Sbjct: 91 STFRLPKGCIREIESMCARFLWSGGTDEHHKAK---VSWSTVCLPKAEGGLGVRKFTEWN 147
Query: 438 KAGLCKLLWWIYSSKKSLWVQW--IHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAH 611
A KL+W ++S+ SLWV W H+ ++ W SW +R +L++R +
Sbjct: 148 TALNLKLIWLLFSNSGSLWVAWHLFHNLSTSVSNFWLIKEGTTDSWNWRCLLRLRPLASK 207
Query: 612 HCFNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYW--NSPP 785
F +GNG FW W P G LL G + RIP + + +V W SP
Sbjct: 208 FLFCSIGNGLTASFWADSWTPFGPLLTFIGSDGPRNQRIPLCSKVADVVNGNRWLLPSPR 267
Query: 786 SSSPMVRTAWRQFQQIPKLGCDEEDQFVW--SPCPSGLFSVASAWEQIRHHYDVWEWTEL 959
SS+ + A+ IP L ED ++W C FS A W +RH W
Sbjct: 268 SSNALNLHAFLTTLSIP-LQPLVEDSYLWKVENCSDIGFSSAHTWNALRHKEVEKPWVSS 326
Query: 960 VWFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSRCELCWAGVESEDHLFFECPFSS 1133
VWF PK +F W +L TK ++ +G C LC G E+ DHL C FS
Sbjct: 327 VWFKGVTPKNAFNMWITHQDRLRTKLRMIAWGFLVSPVCALCQVGFETRDHLMLSCDFSV 386
Query: 1134 EVWMRIKVKCWRNVQVVRGRFQE-SQTILRSFGLNR-ADGVIRKLCYTVTVHFIW 1292
VW ++ + + + FQ S+ IL + ++ A +RKL V+ +W
Sbjct: 387 SVWALVRQRIGTPLTI----FQNWSELILWTQNRSKAAPSTLRKLVAQAVVYALW 437
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 208 bits (529), Expect = 7e-51
Identities = 133/443 (30%), Positives = 215/443 (48%), Gaps = 11/443 (2%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
GQLPV++LGLP++ +++ AD +PL+ K+ W A+ LSYAGRL L+ SV+ S F
Sbjct: 1062 GQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANF 1121
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHG----KSKLRLISWATICRPLEEGGLGIRRIKDMNK 440
W A+ +P ++E L +FL K I+W++IC+P +EGGLGI+ + + NK
Sbjct: 1122 WMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKAKIAWSSICQPKKEGGLGIKSLAEANK 1181
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHC 617
KL+W + S++ SLWV WI + +R + W+A + + SW+++++LK R
Sbjct: 1182 VSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERSSLGSWMWKKLLKYRELAKSMH 1241
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV-REAGYWNSPPSSS 794
V NG +T FW W G LLD G + IP ++ V R + +
Sbjct: 1242 KVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVIDLGIPLETNLETVLRTHQHRQHRAAIY 1301
Query: 795 PMVRTAWRQFQQIPKLGCDEEDQFVWSPCPSGL---FSVASAWEQIRHHYDVWEWTELVW 965
+ ++ QQ + D +W + F W +R H W + VW
Sbjct: 1302 NRINAEIQRLQQQEREA--GPDISLWRSLKNDFNKRFITKVTWNNVRTHQPQQNWYKGVW 1359
Query: 966 FYDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSRCELCWAGVESEDHLFFECPFSSEV 1139
F PK SF W + ++L T D++ + G C LC E+ DHLFF C ++S V
Sbjct: 1360 FPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEETRDHLFFSCQYTSYV 1419
Query: 1140 WMRIKVKCWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERNMRLFN 1319
W + + + R + T+L + L R + + + +++ IW ERN R
Sbjct: 1420 WEALTQRL-LSTNYSRD-WNRLFTLLCTSNLPRDHLFLFRYVFQASIYHIWRERNARRHG 1477
Query: 1320 KGWRSATRLAEEIIQLVHQKVST 1388
+ RL + I + V ++S+
Sbjct: 1478 EISSPTNRLIKLIDKTVRNRISS 1500
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 194 bits (494), Expect = 8e-47
Identities = 116/354 (32%), Positives = 172/354 (48%), Gaps = 15/354 (4%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G LPV++LGLP++ + S D PL+ +K+ W A+ LSY GRL L+ S+L S F
Sbjct: 95 GTLPVRYLGLPLVTKQFSSTDYLPLIDHIKQKICSWSARFLSYTGRLNLISSILWSICNF 154
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHGKSKLRL----ISWATICRPLEEGGLGIRRIKDMNK 440
W GAF +P +++ + ++L +L I+WA +C+P EEGGLG+R +K+ N
Sbjct: 155 WMGAFRLPRDCIREIDKMCSAYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEAND 214
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHC 617
KL+W I S SLWV+WI S L+ W + SW++R+ILK R+ C
Sbjct: 215 VCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIARTLC 274
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEV-----REAGYWNSP 782
+ NG T FW W G L+++ G+ + I + AT+ E R N
Sbjct: 275 KVEINNGAQTSFWYDDWSDLGRLIESAGDRGAIDLGINKHATVVEAWGNRRRRRHRANFL 334
Query: 783 PSSSPMVRTAWRQFQQIPKLGCDEEDQFVWSPCPS---GLFSVASAWEQIRHHYDVWEWT 953
+ +W Q ED +W + +FS W IR + W
Sbjct: 335 NRVEERLVLSWNSRNQ-------AEDCALWKGKENRFRSIFSTKDTWNHIRTVSNKVAWY 387
Query: 954 ELVWFYDKIPKCSFTCWRMLLSKLPTKDKLT--RFGAQSRCELCWAGVESEDHL 1109
+ VWF IPK +F W + ++L T D++T G + C LC +ES DHL
Sbjct: 388 KGVWFAQAIPKHAFCMWLAVHNRLSTGDRMTLWNMGVDATCILCNNALESRDHL 441
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 193 bits (490), Expect = 2e-46
Identities = 109/351 (31%), Positives = 168/351 (47%), Gaps = 10/351 (2%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G+LP+++LGLP++ +LS D APL+ +++ W ++ LS+AGR L+ S++ SS F
Sbjct: 318 GELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCNF 377
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHG----KSKLRLISWATICRPLEEGGLGIRRIKDMNK 440
W AF +P + ++E L SFL SK ISW +C+P EGGLG+R +K+ N
Sbjct: 378 WLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEAND 437
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIW-TATIPNDVSWVYRRILKIRNQFAHHC 617
KL+W I S SLWV+W+ L+ W N SW++++ILK R C
Sbjct: 438 VCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKRFC 497
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSP 797
VGNG++T FW W G L+D G + I R ++ + +
Sbjct: 498 KAEVGNGESTSFWFDDWSLLGRLIDVAGIRGTIDMGISRTMSVADAWTSRRRRHHRQEIL 557
Query: 798 MVRTAWRQFQQIPKLGCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELVWF 968
Q + ++ + +W + FS + W +R + W + VWF
Sbjct: 558 NTIEEVLSTQHQKRTQQQQQGRVLWKGKNDIYKDKFSTKNTWNYLRTTSNEVAWHKGVWF 617
Query: 969 YDKIPKCSFTCWRMLLSKLPTKDKLTRF--GAQSRCELCWAGVESEDHLFF 1115
PK SF W +L T ++ ++ G C C G+E+ DHLFF
Sbjct: 618 PHATPKYSFCLWLAAHDRLATGARMIKWNRGETGDCTFCRQGIETRDHLFF 668
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
[Arabidopsis thaliana]
Length = 657
Score = 192 bits (488), Expect = 4e-46
Identities = 111/362 (30%), Positives = 175/362 (48%), Gaps = 12/362 (3%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G LPV++LG+P++ K+ D PLV + W A+ LS+AGRL+L+KSV+ S+ F
Sbjct: 306 GSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTARHLSFAGRLQLLKSVIYSTINF 365
Query: 273 WTGAFPIPYSVCSKLESLMGSFL----HGKSKLRLISWATICRPLEEGGLGIRRIKDMNK 440
W F +P KLE + +FL ++ ISW +C E GGLG++R+ NK
Sbjct: 366 WASIFILPNQCLHKLEQMCNAFLWSGAPNSAREAKISWDIVCSSKESGGLGLKRLSSWNK 425
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAHHCF 620
KL+W ++++ SLWV W V WV+R++ K+R
Sbjct: 426 VLALKLIWLLFTASGSLWVSW-------------------VRWVWRKLCKLREVARPFVI 466
Query: 621 NLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKE-VREAGYW-NSPPSSS 794
VG+G +FW W G L+ G + + +++ +R +W S S +
Sbjct: 467 CEVGSGITARFWQDNWTGHGPLIHLTGLTGPQLVGLSITSVVRDAIRNDDWWIASSRSRN 526
Query: 795 PMVRTAWRQFQQIPKL-GCDEEDQFVW---SPCPSGLFSVASAWEQIRHHYDVWEWTELV 962
P++ + L C+ +D ++W PS FS A W ++ W + V
Sbjct: 527 PVILLLKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSWHKAV 586
Query: 963 WFYDKIPKCSFTCWRMLLSKLPTKDKLTRFG--AQSRCELCWAGVESEDHLFFECPFSSE 1136
WF +++PK +F W ++L T+D+L +G + C LC E+ DHLFF C FSS
Sbjct: 587 WFTNQVPKHAFISWVTAWNRLHTRDRLRSWGLIVPAECVLCNLVDETRDHLFFACRFSSR 646
Query: 1137 VW 1142
+W
Sbjct: 647 IW 648
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 189 bits (479), Expect = 4e-45
Identities = 111/359 (30%), Positives = 168/359 (46%), Gaps = 12/359 (3%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G LPV++LGLP++ KL+IA+ APL+ + W ++LS+AGR++L+ SV+ F
Sbjct: 655 GSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNF 714
Query: 273 WTGAFPIPYSVCSKLESLMGSFLHG----KSKLRLISWATICRPLEEGGLGIRRIKDMNK 440
W +F +P K+ESL FL K + ++W+ +C P EGG+G+RR N+
Sbjct: 715 WISSFILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNR 774
Query: 441 AGLCKLLWWIYSSKKSLWVQWIHSRFL-RNNSIWTATIPNDVSWVYRRILKIRNQFAHHC 617
+++W ++S+ SLWV W L ++ S W SW ++ +L++R
Sbjct: 775 TLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFI 834
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSP 797
VGNG FW W P G L+ G R+ A I +V + W+ S
Sbjct: 835 RCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSD 894
Query: 798 MVRTAWRQFQQIP-KLGCDEEDQFVW----SPCPSGLFSVASAWEQIRHHYDVWEWTELV 962
+ I + D + W C FS A+ W +R W V
Sbjct: 895 QALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQG--FSAAATWSALRPSSAPVPWARAV 952
Query: 963 WFYDKIPKCSFTCWRMLLSKLPTKDKLTRFGAQ--SRCELCWAGVESEDHLFFECPFSS 1133
WF PK +F W L +LPTK +L +G Q + C LC E+ DHLF C F++
Sbjct: 953 WFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDFAN 1011
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 189 bits (479), Expect = 4e-45
Identities = 156/542 (28%), Positives = 234/542 (43%), Gaps = 16/542 (2%)
Frame = +3
Query: 108 KHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIFWTGAF 287
K+LG ++P KL D L+ + GWQAK L+ AGR L+KSV+ S ++ +
Sbjct: 752 KYLGCNILPNKLRRGDYDGLLEKVKSAINGWQAKYLNMAGRCTLIKSVVSSFPVYGMQSS 811
Query: 288 PIPYSVCSKLESLMGSFLHGKSK----LRLISWATICRPLEEGGLGIRRIKDMNKAGLCK 455
+P SV +++E FL K L +SW IC P +GGLG RR+ + N A + K
Sbjct: 812 LLPVSVMNEIEKDCRKFLWNKMDKSHYLARMSWDRICSPTGKGGLGFRRLHNWNLAFMAK 871
Query: 456 LLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAHHCFNLVGN 635
L W I + LWV+ + +R+ S +A N S ++R I+K R +GN
Sbjct: 872 LGWMIIKDETKLWVRILKARYWERGSFLSAVGKNHHSPIWRDIVKGRELLEKGLVRRIGN 931
Query: 636 GDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSPMVRTAW 815
G +T W H W G L+D G N F + + + G W++ S +
Sbjct: 932 GRSTSLWYHWWVGGGPLVDVMGSNIPEFM---SHWQVSNIIKRGRWDTKKISHLLPPDIL 988
Query: 816 RQFQQIPKLGCDE-EDQFVWSPCPSGLFSVASAWEQIRHHYD----VWEWTELVWFYDKI 980
+Q ++IP E ED F W+ +G FSV SA+ I + W L W +
Sbjct: 989 KQIKEIPLASMSEVEDDFTWNFEKNGTFSVKSAYYLINRREEETGGKGSWRGL-WRKNIP 1047
Query: 981 PKCSFTCWRMLLSKLPTKDKLTR--FGAQSRCELCWAGVESEDHLFFECPFSSEVWMRIK 1154
K W + + LPT L + +C C +E HLF +C +S VW+ I
Sbjct: 1048 FKYKLLIWNGIHNILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVASSVWIEIL 1107
Query: 1155 VKCWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERNMRLFNKGWRS 1334
N Q + + + I F LN+ D + K +T IW RN +F
Sbjct: 1108 KHHKPNNQNLFFNLEWEEWI--DFNLNQHDYWVTK--FTTAFWHIWCSRNKTVF------ 1157
Query: 1335 ATRLAEEIIQLVHQKVSTSKKLLSNSLDGEFLAQF--WHVNFDQLR-DPIVCQWSPPPEG 1505
+ K N + +F + VN Q +V +W PP +G
Sbjct: 1158 -------------ECAVNHPKFTYNRVVADFFTNIRAFQVNNTQGNGSKVVLRWKPPHQG 1204
Query: 1506 ELVLNSDGSLSA--RGCFFGGVIRNHMGEIILGYSGGTSQGSVLLLEALGMYHGLKVAKE 1679
L LN+DG+ A GGV R+ +G LG++ GS E + + GL+VA +
Sbjct: 1205 FLKLNTDGAWKADWENAGIGGVFRDAVGNWELGFAKRVDAGSPEAAELMAIREGLQVAWD 1264
Query: 1680 RN 1685
N
Sbjct: 1265 CN 1266
>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 441
Score = 185 bits (470), Expect = 5e-44
Identities = 129/440 (29%), Positives = 200/440 (45%), Gaps = 24/440 (5%)
Frame = +3
Query: 141 LSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIFWTGAFPIPYSVCSKLE 320
++ +D PL+ ++ W A+ LS+AGRL+L+ SV+ S FW AF +P + +++
Sbjct: 1 MTTSDYIPLIERIRERISCWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPNACIKEID 60
Query: 321 SLMGSFLHGKSKLR----LISWATICRPLEEGGLGIRRIKDMNKAGLCKLLWWIYSSKKS 488
L +FL +L +SW +C P EEGGLG+R + + NK KL+W + SS S
Sbjct: 61 GLCSAFLWSGPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLSS-SS 119
Query: 489 LWVQWIHSRFLRNNSIWTATIPNDV-SWVYRRILKIRNQFAHHCFNLVGNGDATKFWLHR 665
LWVQW+ +R S W+ + + SW++R++LK R+ + + NG FW
Sbjct: 120 LWVQWLRQYVIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDN 179
Query: 666 WHPQGMLLDTFGENCRLFTRIPRRATIKEV-------REAGYWNSPPSSSPMVRTAWRQF 824
W P G L+ G + I AT+ E A + N + +RT
Sbjct: 180 WSPLGPLIAISGTRGCIDMGIDIHATVAEALTHRRRRHRADHLNQMEAQLEELRT----- 234
Query: 825 QQIPKLGCDEEDQFVWSP-----CPSGLFSVASAWEQIRHHYDVWEWTELVWFYDKIPKC 989
K + ED +W PS FS W R EW + +WF PK
Sbjct: 235 ----KGLVETEDVVLWKGKGGRFKPS--FSTKETWADTREQKPRNEWYQGIWFSHATPKY 288
Query: 990 SFTCWRMLLSKLPTKDKLTRF--GAQSRCELCWAGVESEDHLFFECPFSSEVWMRIKVKC 1163
SF W ++L T D++ + G C C E+ +HLFF C +S EVW + K
Sbjct: 289 SFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVWSGLTSKL 348
Query: 1164 WRNVQVVRGRFQESQTIL-----RSFGLNRADGVIRKLCYTVTVHFIWWERNMRLFNKGW 1328
+ R + TIL ++ G NR + + + + V+ IW ERN R +
Sbjct: 349 -----LTRHYSTDWTTILKLLTDKTLGNNRL--FLLRYAFQILVYSIWKERNSRRHGEEP 401
Query: 1329 RSATRLAEEIIQLVHQKVST 1388
+ L + + + V K+ST
Sbjct: 402 LPSALLLKRLDKEVRNKLST 421
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 184 bits (468), Expect = 8e-44
Identities = 119/416 (28%), Positives = 181/416 (43%), Gaps = 8/416 (1%)
Frame = +3
Query: 93 GQLPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIF 272
G PV++LG+P+I KL + DC+PL+ +++ W+ K+LS+AGRL+L++SVL S ++
Sbjct: 587 GTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVY 646
Query: 273 WTGAFPIPYSVCSKLESLMGSFL-----HGKSKLRLISWATICRPLEEGGLGIRRIKDMN 437
W +P V +E + FL G++ + ++W+ IC P EGGLGI+ + N
Sbjct: 647 WASHLILPKKVLKDIEKRLRCFLWAGNCSGRAATK-VAWSEICLPKCEGGLGIKDLHCWN 705
Query: 438 KAGLCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAHHC 617
KA + +W + SS + W W+ L+ NS W A +P+ SW +R++LKIR
Sbjct: 706 KALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWRKLLKIRELCCSFF 765
Query: 618 FNLVGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSP 797
N++G+G AT W WHP G L + N + E+G S S
Sbjct: 766 VNIIGDGRATSLWFDNWHPLGPLTLRWSSNI--------------IGESGL-----SKSA 806
Query: 798 MVRTAWRQFQQIPKLGCDEEDQFVWSPCPSGLFSVASAWEQIRHHYDVWEWTELVWFYDK 977
M+ P+G +S +SAW +R + W LVWF
Sbjct: 807 ML-------------------------TPNGFYSTSSAWNTLRPSRFIVPWYRLVWFV-- 839
Query: 978 IPKCSFTCWRMLLSKLPTKDKLTRFGAQSRCELCWAGVESEDHLFFECPFSSEVWMRIKV 1157
E+ +HLFF+C +S +W +
Sbjct: 840 -------------------------------------AETHNHLFFDCAYSFGIWTHVLS 862
Query: 1158 KCWRNVQVVRGRFQESQTIL---RSFGLNRADGVIRKLCYTVTVHFIWWERNMRLF 1316
KC V + S I ++ N VI KL V+ IW ERN R F
Sbjct: 863 KC----DVSKPLLPWSDFIFWVATNWKGNSLPVVILKLALQAVVYAIWRERNNRRF 914
>ref|XP_007017131.1| Uncharacterized protein TCM_033752 [Theobroma cacao]
gi|508722459|gb|EOY14356.1| Uncharacterized protein
TCM_033752 [Theobroma cacao]
Length = 2251
Score = 183 bits (465), Expect = 2e-43
Identities = 154/548 (28%), Positives = 242/548 (44%), Gaps = 18/548 (3%)
Frame = +3
Query: 99 LPVKHLGLPVIPGKLSIADCAPLVGMFARKLEGWQAKILSYAGRLELVKSVLQSSYIFWT 278
LP+ +LG P+ G + LV ++ GW+ KILS GR+ L++SVL S I+
Sbjct: 1629 LPITYLGAPLYKGHKKVILFNDLVAKIEERITGWENKILSPGGRITLLRSVLASLPIYLL 1688
Query: 279 GAFPIPYSVCSKLESLMGSFLHGKS----KLRLISWATICRPLEEGGLGIRRIKDMNKAG 446
P V ++ L SFL G S ++ SWA I P+ EGGL IR + ++ +A
Sbjct: 1689 QVLKPPVCVLERVNRLFNSFLWGGSAASKRIHWASWAKIALPVTEGGLDIRSLAEVFEAF 1748
Query: 447 LCKLLWWIYSSKKSLWVQWIHSRFLRNNSIWTATIPNDVSWVYRRILKIRNQFAHHCFNL 626
K LWW + + SLW +++ ++ R S ++R+L H
Sbjct: 1749 SMK-LWWRFRTTDSLWTRFMRMKYCRGQLPMQTQPKLHDSQTWKRMLTSSTITEQHMRWR 1807
Query: 627 VGNGDATKFWLHRWHPQGMLLDTFGENCRLFTRIPRRATIKEVREAGYWNSPPSSSPMVR 806
VG G+ FW W + L+ + E FT + + WN + + +
Sbjct: 1808 VGQGNVF-FWHDCWMGEAPLISSNQE----FT--SSMVQVCDFFTNNSWNIEKLKTVLQQ 1860
Query: 807 TAWRQFQQIPKLGCDEEDQFVWSPCPSGLFSVASAWEQIRHHYDVWEWTELVWFYDKIPK 986
+ +IP + +D+ W+P P+G FS SAW+ IR V +W
Sbjct: 1861 EVVDEIAKIP-IDTMNKDEAYWTPTPNGDFSTKSAWQLIRKRKVVNPVFNFIWHKTVPLT 1919
Query: 987 CSFTCWRMLLSKLPTKDKLTRFGAQ--SRCELCWAGVESEDHLFFECPFSSEVW------ 1142
SF WR+L +P + K+ G Q SRC C ES H+ ++ P + +VW
Sbjct: 1920 TSFFLWRLLHDWIPVELKMKSKGLQLASRCRCC-KSEESIMHVMWDNPVAMQVWNYFAKL 1978
Query: 1143 --MRIKVKCWRNVQVVRGRFQESQTILRSFGLNRADGVIRKLCYTVTVHFIWWERNMRLF 1316
+ I C N Q++ F G G IR L + F+W ERN
Sbjct: 1979 FQILIINPCTIN-QIIGAWFYS--------GDYCKPGHIRTLVPLFILWFLWVERNDAKH 2029
Query: 1317 NKGWRSATRLAEEIIQLVHQKVSTSKKLLSNSLDGE-FLAQFWHVNF--DQLRDPIVCQW 1487
R+ +++L+ Q++S ++LL G+ +AQ W + F + L P V W
Sbjct: 2030 RNLGMYPNRVVWRVLKLI-QQLSLGQQLLKWQWKGDKQIAQEWGIIFQAESLAPPKVFSW 2088
Query: 1488 SPPPEGELVLNSDGSL-SARGCFFGGVIRNHMGEIILGYSGGTSQGSVLLLEALGMYHGL 1664
P GE LN DGS + GG++R+H GE++ G+S + L E L +Y GL
Sbjct: 2089 HKPSLGEFKLNVDGSAKQSHNAAGGGILRDHAGEMVFGFSENLGTQNSLQAELLALYRGL 2148
Query: 1665 KVAKERNV 1688
+ ++ N+
Sbjct: 2149 ILCRDYNI 2156