BLASTX nr result
ID: Cocculus22_contig00007089
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00007089
(302 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG38497.1|AF261032_5 putative chloroplast RNA helicase VDL' ... 94 3e-17
gb|AAG34883.1|AF261028_1 putative chloroplast RNA helicase VDL' ... 94 3e-17
gb|EEE67822.1| hypothetical protein OsJ_25587 [Oryza sativa Japo... 75 1e-11
gb|EEC72249.1| hypothetical protein OsI_05378 [Oryza sativa Indi... 75 1e-11
dbj|BAD87358.1| putative RNA helicase [Oryza sativa Japonica Group] 75 1e-11
gb|EMT09515.1| DEAD-box ATP-dependent RNA helicase 58, chloropla... 71 1e-10
ref|XP_006489327.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 71 2e-10
ref|XP_006489326.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 71 2e-10
ref|XP_006419853.1| hypothetical protein CICLE_v10004897mg [Citr... 71 2e-10
gb|AAG34882.1|AF261027_1 putative chloroplast RNA helicase VDL' ... 67 3e-09
gb|AAG38496.1|AF261032_4 putative chloroplast RNA helicase VDL' ... 67 3e-09
ref|XP_002315792.2| hypothetical protein POPTR_0010s10230g [Popu... 66 6e-09
gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL i... 66 6e-09
gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' ... 66 6e-09
gb|AAG38493.1|AF261032_1 putative chloroplast RNA helicase VDL' ... 66 6e-09
ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putativ... 65 8e-09
ref|XP_007222883.1| hypothetical protein PRUPE_ppa005191mg [Prun... 65 1e-08
ref|XP_006349223.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 64 2e-08
ref|XP_004229420.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 64 2e-08
gb|AAG34884.1|AF261029_1 putative chloroplast RNA helicase VDL' ... 64 2e-08
>gb|AAG38497.1|AF261032_5 putative chloroplast RNA helicase VDL' isoform 5 [Nicotiana
tabacum]
Length = 289
Score = 93.6 bits (231), Expect = 3e-17
Identities = 46/69 (66%), Positives = 54/69 (78%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEVCNKKKRMHTLLSLL*TDGPT 275
S + EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEVC K+++ LLSLL D P
Sbjct: 188 SWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVCTKREKNQVLLSLLQVDSPE 247
Query: 276 SGIIFVGEQ 302
S IIFV EQ
Sbjct: 248 SAIIFVSEQ 256
>gb|AAG34883.1|AF261028_1 putative chloroplast RNA helicase VDL' isoform 5 [Nicotiana
tabacum]
Length = 390
Score = 93.6 bits (231), Expect = 3e-17
Identities = 46/69 (66%), Positives = 54/69 (78%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEVCNKKKRMHTLLSLL*TDGPT 275
S + EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEVC K+++ LLSLL D P
Sbjct: 188 SWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVCTKREKNQVLLSLLQVDSPE 247
Query: 276 SGIIFVGEQ 302
S IIFV EQ
Sbjct: 248 SAIIFVSEQ 256
>gb|EEE67822.1| hypothetical protein OsJ_25587 [Oryza sativa Japonica Group]
Length = 395
Score = 75.1 bits (183), Expect = 1e-11
Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 33/102 (32%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV-------------------- 215
S + EPP I+VAT+ SLCQ++EK F L++M+VLVIDEV
Sbjct: 153 SWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQTDVVHVHVNPV 212
Query: 216 -------------CNKKKRMHTLLSLL*TDGPTSGIIFVGEQ 302
C+KK+R+H LLSLL D P SGIIFV EQ
Sbjct: 213 QPMPSHLQHKYAICSKKERLHVLLSLLEKDAPKSGIIFVAEQ 254
>gb|EEC72249.1| hypothetical protein OsI_05378 [Oryza sativa Indica Group]
Length = 385
Score = 75.1 bits (183), Expect = 1e-11
Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 33/102 (32%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV-------------------- 215
S + EPP I+VAT+ SLCQ++EK F L++M+VLVIDEV
Sbjct: 143 SWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQTDVVHVHVNPV 202
Query: 216 -------------CNKKKRMHTLLSLL*TDGPTSGIIFVGEQ 302
C+KK+R+H LLSLL D P SGIIFV EQ
Sbjct: 203 QPMPSHLQHKYAICSKKERLHVLLSLLEKDAPKSGIIFVAEQ 244
>dbj|BAD87358.1| putative RNA helicase [Oryza sativa Japonica Group]
Length = 377
Score = 75.1 bits (183), Expect = 1e-11
Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 33/102 (32%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV-------------------- 215
S + EPP I+VAT+ SLCQ++EK F L++M+VLVIDEV
Sbjct: 153 SWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQTDVVHVHVNPV 212
Query: 216 -------------CNKKKRMHTLLSLL*TDGPTSGIIFVGEQ 302
C+KK+R+H LLSLL D P SGIIFV EQ
Sbjct: 213 QPMPSHLQHKYAICSKKERLHVLLSLLEKDAPKSGIIFVAEQ 254
>gb|EMT09515.1| DEAD-box ATP-dependent RNA helicase 58, chloroplastic [Aegilops
tauschii]
Length = 413
Score = 71.2 bits (173), Expect = 1e-10
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 23/89 (25%)
Frame = +3
Query: 105 QVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDE-----------------------V 215
Q EPP I+VAT+ SLCQ++EK F L ++++LVIDE +
Sbjct: 184 QAEPPAIIVATVASLCQMVEKRAFSLGSIKILVIDESDVVHVHVNPVQPMPSHLRHTYVI 243
Query: 216 CNKKKRMHTLLSLL*TDGPTSGIIFVGEQ 302
C+KK+R+H LLSLL D P S IIFV +Q
Sbjct: 244 CSKKERLHVLLSLLERDAPKSVIIFVAQQ 272
>ref|XP_006489327.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like isoform X2 [Citrus sinensis]
Length = 322
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVATMGSLCQ++EKHIFKLE++QVLVIDEV N K++ +L LL
Sbjct: 40 SWLKAEPPTIVVATMGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL 96
>ref|XP_006489326.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like isoform X1 [Citrus sinensis]
Length = 473
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVATMGSLCQ++EKHIFKLE++QVLVIDEV N K++ +L LL
Sbjct: 191 SWLKAEPPTIVVATMGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL 247
>ref|XP_006419853.1| hypothetical protein CICLE_v10004897mg [Citrus clementina]
gi|557521726|gb|ESR33093.1| hypothetical protein
CICLE_v10004897mg [Citrus clementina]
Length = 473
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVATMGSLCQ++EKHIFKLE++QVLVIDEV N K++ +L LL
Sbjct: 191 SWLKAEPPTIVVATMGSLCQLIEKHIFKLESVQVLVIDEVDFLFNSSKQVSSLKKLL 247
>gb|AAG34882.1|AF261027_1 putative chloroplast RNA helicase VDL' isoform 4 [Nicotiana
tabacum]
Length = 425
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Frame = +3
Query: 105 QVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
Q EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEV N K + +L LL
Sbjct: 150 QAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLL 203
>gb|AAG38496.1|AF261032_4 putative chloroplast RNA helicase VDL' isoform 4 [Nicotiana
tabacum]
Length = 324
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/54 (64%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Frame = +3
Query: 105 QVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
Q EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEV N K + +L LL
Sbjct: 150 QAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLL 203
>ref|XP_002315792.2| hypothetical protein POPTR_0010s10230g [Populus trichocarpa]
gi|550329495|gb|EEF01963.2| hypothetical protein
POPTR_0010s10230g [Populus trichocarpa]
Length = 477
Score = 65.9 bits (159), Expect = 6e-09
Identities = 35/57 (61%), Positives = 43/57 (75%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVAT+ SLCQ+LEKH+ KLE+MQVLVIDEV N K++ +L LL
Sbjct: 199 SWLKAEPPTIVVATIASLCQMLEKHLLKLESMQVLVIDEVDFMFNSSKQVSSLRKLL 255
>gb|AAG34873.1|AF261020_1 putative chloroplast RNA helicase VDL isoform 1 [Nicotiana tabacum]
gi|11385590|gb|AAG34876.1|AF261021_1 putative
chloroplast RNA helicase VDL isoform 1 [Nicotiana
tabacum]
Length = 466
Score = 65.9 bits (159), Expect = 6e-09
Identities = 35/57 (61%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEV N K + +L LL
Sbjct: 188 SWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLL 244
>gb|AAG34879.1|AF261024_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana
tabacum]
Length = 466
Score = 65.9 bits (159), Expect = 6e-09
Identities = 35/57 (61%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEV N K + +L LL
Sbjct: 188 SWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLL 244
>gb|AAG38493.1|AF261032_1 putative chloroplast RNA helicase VDL' isoform 1 [Nicotiana
tabacum]
Length = 365
Score = 65.9 bits (159), Expect = 6e-09
Identities = 35/57 (61%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEV N K + +L LL
Sbjct: 188 SWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEVDFMFNSSKEISSLKRLL 244
>ref|XP_002517195.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543830|gb|EEF45358.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 476
Score = 65.5 bits (158), Expect = 8e-09
Identities = 35/57 (61%), Positives = 43/57 (75%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPP IVVAT+ SLCQ+LEKHIFKL++MQVLVIDEV N K++ +L LL
Sbjct: 198 SWLKAEPPKIVVATIASLCQMLEKHIFKLDSMQVLVIDEVDFMFNSSKQVSSLRKLL 254
>ref|XP_007222883.1| hypothetical protein PRUPE_ppa005191mg [Prunus persica]
gi|462419819|gb|EMJ24082.1| hypothetical protein
PRUPE_ppa005191mg [Prunus persica]
Length = 473
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/40 (77%), Positives = 36/40 (90%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV 215
S + EPPTIVVAT+GSLCQ+LEKH+ KLEAM+VLVIDEV
Sbjct: 196 SWLKAEPPTIVVATIGSLCQMLEKHMIKLEAMRVLVIDEV 235
>ref|XP_006349223.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Solanum tuberosum]
Length = 462
Score = 63.9 bits (154), Expect = 2e-08
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVAT+GSLCQ+LEKHI KL+ QVLV+DEV N K + +L LL
Sbjct: 181 SWLKAEPPTIVVATIGSLCQMLEKHILKLDTCQVLVVDEVDFMFNSSKEVSSLKRLL 237
>ref|XP_004229420.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 58,
chloroplastic-like [Solanum lycopersicum]
Length = 459
Score = 63.9 bits (154), Expect = 2e-08
Identities = 34/57 (59%), Positives = 41/57 (71%), Gaps = 3/57 (5%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV---CNKKKRMHTLLSLL 257
S + EPPTIVVAT+GSLCQ+LEKHI KL+ QVLV+DEV N K + +L LL
Sbjct: 181 SWLKAEPPTIVVATIGSLCQMLEKHILKLDTCQVLVVDEVDFMFNSSKEVSSLKRLL 237
>gb|AAG34884.1|AF261029_1 putative chloroplast RNA helicase VDL' isoform 6 [Nicotiana
tabacum]
Length = 294
Score = 63.9 bits (154), Expect = 2e-08
Identities = 30/40 (75%), Positives = 35/40 (87%)
Frame = +3
Query: 96 SLFQVEPPTIVVATMGSLCQILEKHIFKLEAMQVLVIDEV 215
S + EPPTIVVATMGSLCQ+LEKHI KL++ QVLV+DEV
Sbjct: 188 SWLKAEPPTIVVATMGSLCQMLEKHILKLDSCQVLVVDEV 227