BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00006628
         (675 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       192   8e-47
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   187   2e-45
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   180   3e-43
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   177   3e-42
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   175   1e-41
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   175   1e-41
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   175   1e-41
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   174   2e-41
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   172   7e-41
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   172   9e-41
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      172   9e-41
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   171   2e-40
ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [A...   171   2e-40
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   169   6e-40
ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis tha...   169   6e-40
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   168   1e-39
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      167   2e-39
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       157   2e-36
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   156   7e-36
ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutr...   156   7e-36

>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  192 bits (488), Expect = 8e-47
 Identities = 94/167 (56%), Positives = 124/167 (74%), Gaps = 1/167 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           +SGFP+HVSA+ VK+FLEG+TG GTVYA+KIR  K    R++A+VQF T + AE I  L 
Sbjct: 7   LSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAELIIRLA 66

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           N RL+YG SYL  R MERDIVPKPRA L SL    LHFGCQ+S E+F  LW+  +  V+F
Sbjct: 67  NPRLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWRVGNVSVDF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           G G R++ F L++  V+Y+L+L Y+++WQI+LHRP G  AK+L+IQ+
Sbjct: 127 GLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQL 173


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
           polymerase 1 isoform 1 [Theobroma cacao]
           gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
           gi|508709489|gb|EOY01386.1| RNA-dependent RNA polymerase
           1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  187 bits (476), Expect = 2e-45
 Identities = 95/168 (56%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           VS FP++V A+ VK FLE YTG  TVYALKIR+ K    RA+A+VQFT +  AE I  L 
Sbjct: 7   VSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGG-RAYAIVQFTKSTDAELIIRLT 65

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           N+RLYYG+SYL  R+ME DIVPKPR  L ++    LHFGCQVS+E+F+ LW+ +D  V F
Sbjct: 66  NQRLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEEVDVTVNF 125

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQVW 175
           G G RK++FLLSH  V+Y+L+L Y++IWQI+LHRP    +K+L+IQ++
Sbjct: 126 GMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLF 173


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
           max] gi|571439308|ref|XP_006574822.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
           max] gi|571439310|ref|XP_006574823.1| PREDICTED:
           RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
           max]
          Length = 1125

 Score =  180 bits (457), Expect = 3e-43
 Identities = 91/168 (54%), Positives = 116/168 (69%), Gaps = 4/168 (2%)
 Frame = -1

Query: 669 GFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYL---- 502
           GFP  V+   VK F+E YTG+GTV+A+K+R  KG  PRAFA++QFTT   A  +      
Sbjct: 9   GFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSATSMMSRANN 68

Query: 501 INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVE 322
           I R L YGTSYL  R+MERDIVP+PR  L SL+   L FGCQ+S  RF  LWK  D +V 
Sbjct: 69  ILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLWKKQDVIVN 128

Query: 321 FGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           FG G RK+ FL SH++V YKLELSY++IW+I+LHRP     ++L+IQ+
Sbjct: 129 FGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQL 176


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  177 bits (449), Expect = 3e-42
 Identities = 89/168 (52%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYL-- 502
           V GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT  + A +I    
Sbjct: 7   VFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYARQIITGA 66

Query: 501 INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVE 322
             RRLYYG SYL   ++++DIVPKPRA L +++   ++FGCQVS ++F +LW   D  V 
Sbjct: 67  AERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQDVCVS 126

Query: 321 FGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQV
Sbjct: 127 FGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 174


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
           family protein [Populus trichocarpa]
          Length = 1133

 Score =  175 bits (444), Expect = 1e-41
 Identities = 86/168 (51%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           VSGFP+  +A  V+ FLE +TG GTV ALKIR+ +    R +A+VQFTTT+ AE+I  L 
Sbjct: 7   VSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAEQIISLA 66

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           N RL+YG SYL  R M+RDI+P+PR+ L ++    LHFG Q S E+F ++W G +  V F
Sbjct: 67  NPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSGNNVSVNF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQVW 175
           G G RK+ F LSH+  +YKL L +++IWQI+LHRP G   K+L+IQ++
Sbjct: 127 GLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLY 174


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  175 bits (443), Expect = 1e-41
 Identities = 85/169 (50%), Positives = 118/169 (69%), Gaps = 3/169 (1%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYLI- 499
           V GFPA V+A+ VKDFLE  TG GTVYALK+R  K    R +A+VQFTT + A+ I  + 
Sbjct: 7   VFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAADTIISLA 66

Query: 498 --NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVV 325
               +L+YG SYL  R+ME+D VP+PR  + ++    LHFGC++S+E+F  LW+G++  V
Sbjct: 67  CRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWRGVNVTV 126

Query: 324 EFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
            FGFG RK+ FLLSH   +Y+LEL Y++IW+I+LH P     K+L+IQ+
Sbjct: 127 NFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQL 175


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
           gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
           1a [Cucumis sativus]
          Length = 1130

 Score =  175 bits (443), Expect = 1e-41
 Identities = 90/167 (53%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           +SGFP+HV+A  VK+FLEG+TG GTVYA+K+R  K    R +A+VQFT+   AE I  L 
Sbjct: 7   ISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAELIISLA 66

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           N+RL+YG+SYL  R  E DIVPKPR  + +L    L FGCQVS E+F  LW+G   +V F
Sbjct: 67  NQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGNVDLVTF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           G G RK+ F L +  V+Y+LELSY+ IWQIQLH P   + K+L+IQ+
Sbjct: 127 GIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQL 173


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  174 bits (442), Expect = 2e-41
 Identities = 88/167 (52%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYL-- 502
           V GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT  + A +I    
Sbjct: 7   VFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNERYARQIITGA 66

Query: 501 INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVE 322
             R LYYG SYL   ++E+DIVPKPRA L +++   ++FGCQVS ++F +LW   D  V 
Sbjct: 67  AERSLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSAQDVCVS 126

Query: 321 FGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQ 181
           FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQ
Sbjct: 127 FGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQ 173


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  172 bits (437), Expect = 7e-41
 Identities = 89/168 (52%), Positives = 112/168 (66%), Gaps = 2/168 (1%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYL-- 502
           V GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT    A +I    
Sbjct: 7   VFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVFAIVQFTNEIYARQIITGA 66

Query: 501 INRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVE 322
             RRLYYG SYL   ++E+DIVPKPRA L +++   ++FGCQVS +   +LW   D  V 
Sbjct: 67  AERRLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQTLLTLWSAQDVSVS 126

Query: 321 FGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           FG G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQV
Sbjct: 127 FGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 174


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  172 bits (436), Expect = 9e-41
 Identities = 91/183 (49%), Positives = 122/183 (66%), Gaps = 4/183 (2%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYLIN 496
           V G P++VSA  +K+FLE YTG+GT+ AL+I++ K       A VQFT+ + AE I  + 
Sbjct: 7   VYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAELIISLA 66

Query: 495 RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEFG 316
           ++L+YG +YL  R+M+ DI+PKPR  L S++   LHFG Q+S+ERF  LWK I+  V+FG
Sbjct: 67  KQLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWKAINVSVKFG 126

Query: 315 FGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV----WFLETVISCN 148
           FG RK  F LSH   +YKLELS ++IWQIQL  P G N KFL+IQ+       E  +S  
Sbjct: 127 FGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQIYEKDVSAL 186

Query: 147 SYF 139
           SYF
Sbjct: 187 SYF 189


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  172 bits (436), Expect = 9e-41
 Identities = 94/168 (55%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           V GF + VSA  VK FLEGYTG  TVYALKIR+HK S  RAFA+VQFT +  A  I  L 
Sbjct: 7   VYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAGLIIRLA 65

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           N+RLYYG SYL  R+ME DIVPKPR  L ++    ++FGCQVS+E+F+ LWK  +  + F
Sbjct: 66  NQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKADNVTLNF 125

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQVW 175
           G G RK+EFLLS+    YKLEL Y++IWQI+L  P    +K L+IQ++
Sbjct: 126 GTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLF 173


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  171 bits (434), Expect = 2e-40
 Identities = 88/167 (52%), Positives = 117/167 (70%), Gaps = 1/167 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           V GFP+ VSA  +K+FLE YTG+GT+ AL+I++ +       A VQFT+ + AE I  L 
Sbjct: 7   VYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAEFIITLC 66

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
            ++++YG +YL  R+M+ DI+PKPRA L S++   LHFGCQ+SDERF  LWK I+  V+F
Sbjct: 67  KKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           G G RK  F LSH   +YKLELSY++IWQIQL  P G   KFL+IQ+
Sbjct: 127 GSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQL 173


>ref|XP_006849794.1| hypothetical protein AMTR_s00176p00039530 [Amborella trichopoda]
           gi|548853371|gb|ERN11375.1| hypothetical protein
           AMTR_s00176p00039530 [Amborella trichopoda]
          Length = 1210

 Score =  171 bits (433), Expect = 2e-40
 Identities = 90/170 (52%), Positives = 112/170 (65%), Gaps = 4/170 (2%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGS-NPRAFAVVQFTTTKCAEEIYLI 499
           VSGFP    A+ VK FLE  TG GTVY LKIR HK   N R FA+VQFTT+K AE IY +
Sbjct: 80  VSGFPQGTCAEAVKKFLESITGFGTVYHLKIRIHKSKPNSRVFAIVQFTTSKSAEVIYSL 139

Query: 498 N---RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAV 328
               + LY+G SY+ VR ME DIVP PR     L    L+FG Q+S+E F  LW   +  
Sbjct: 140 APQPKSLYFGNSYVIVRYMENDIVPNPRVTYHVLESIQLYFGNQISEESFAILWSNTNVK 199

Query: 327 VEFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           VEFGFG +K+ F L+H  VDYKL+L Y++IWQIQL RPG    ++L++Q+
Sbjct: 200 VEFGFGLKKIFFYLAHTGVDYKLDLYYENIWQIQLRRPGTEGTRYLVLQM 249


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  169 bits (429), Expect = 6e-40
 Identities = 87/167 (52%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYLIN 496
           V GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR +A+VQFT+ +    I    
Sbjct: 7   VFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAA 66

Query: 495 -RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
             RLYYG SYL   ++E+DIVPKPRA L +++   + FGCQVS ++F +LW   D  V F
Sbjct: 67  AERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           G G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQV
Sbjct: 127 GIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 173


>ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
           gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName:
           Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
           AltName: Full=RNA-directed RNA polymerase 1
           gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19
           [Arabidopsis thaliana] gi|110737376|dbj|BAF00633.1|
           putative RNA-directed RNA polymerase [Arabidopsis
           thaliana] gi|332191105|gb|AEE29226.1| RNA-dependent RNA
           polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  169 bits (429), Expect = 6e-40
 Identities = 87/167 (52%), Positives = 112/167 (67%), Gaps = 1/167 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYLIN 496
           V GFP  VSA+ VK FLE  TG GTVYA+K+R+ K   PR +A+VQFT+ +    I    
Sbjct: 7   VFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAA 66

Query: 495 -RRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
             RLYYG SYL   ++E+DIVPKPRA L +++   + FGCQVS ++F +LW   D  V F
Sbjct: 67  AERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQDVCVSF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           G G RK+ F  S    DY+LELSY++IWQI LH P G ++KFL+IQV
Sbjct: 127 GIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQV 173


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
           gi|482575337|gb|EOA39524.1| hypothetical protein
           CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  168 bits (426), Expect = 1e-39
 Identities = 87/167 (52%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           V GFP  V+   VK FLE  TG GTVYA+K+R+ K   PR FA+VQFT+ + A  I  + 
Sbjct: 7   VFGFPVGVNTDDVKIFLERLTGSGTVYAIKVRQPKRGGPRVFAIVQFTSERHARLIITMA 66

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
             RLYYG SYL   +ME+DIVPKPRA L S++   ++FGCQVS ++  +LW   +  V F
Sbjct: 67  AERLYYGRSYLKAFEMEQDIVPKPRASLHSISNLKMYFGCQVSPKKLLTLWSAHNVCVSF 126

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
           G G RK+ F +S    DY+LELSY++IWQI LH P G ++KFL+IQV
Sbjct: 127 GTGMRKLHFSMSWYQKDYRLELSYENIWQIDLHSPQGGSSKFLVIQV 173


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  167 bits (424), Expect = 2e-39
 Identities = 92/168 (54%), Positives = 116/168 (69%), Gaps = 1/168 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           V GF + VSA  VK FLEGYTG  TVYALKIR+HK S  RAFA+VQFT +  A  I  L 
Sbjct: 7   VYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSG-RAFAIVQFTRSSDAGLIIRLA 65

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           N+RLYYG SYL  R+ME DIVPKPR  L ++    ++F C VS+E+F+ LWK  +  + F
Sbjct: 66  NQRLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKADNVTLNF 125

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQVW 175
           G G RK+EFLLS+    YKLEL Y++IWQI+L  P    +K L+IQ++
Sbjct: 126 GTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLF 173


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  157 bits (398), Expect = 2e-36
 Identities = 88/185 (47%), Positives = 123/185 (66%), Gaps = 6/185 (3%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           V GFP  +SA+ VK FLE +TG+GTVYAL++++ KG   RAFA VQF   K AE I  L 
Sbjct: 7   VFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGR-RAFAKVQFANNKSAEFIIDLA 65

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
           ++ LYYG SYL   +M+ DIV +PR  +  ++   L+FGCQ+SD++F  L    D  ++F
Sbjct: 66  SKGLYYGPSYLKAWEMKTDIV-QPRTYVEHMDGVTLNFGCQISDKKFAVLGSK-DVSIKF 123

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQVWFLETVI-----S 154
           G G +K+ F LSH   DYKL+LSY++IWQ+ LHRP G NA+FL++Q++    +      S
Sbjct: 124 GIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRIYKRLEDS 183

Query: 153 CNSYF 139
           C S+F
Sbjct: 184 CYSFF 188


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  156 bits (394), Expect = 7e-36
 Identities = 81/168 (48%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIY-LI 499
           V GFP  V+A++VK FLE YTG+GTV AL+++  K    RA+A VQFT  +CAE I  L 
Sbjct: 7   VFGFPYLVAAELVKKFLENYTGEGTVIALEVKTAKVGR-RAYARVQFTNIRCAETIIDLA 65

Query: 498 NRRLYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVVEF 319
             RLYYGTSYL   + + DIV  PR     +    L+FGCQ+S  +F  LWKG    V+F
Sbjct: 66  KNRLYYGTSYLKAYESDIDIVQNPRTFAHEMENVTLNFGCQISPHKFSVLWKGESVTVKF 125

Query: 318 GFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQVW 175
           G G +K+ F L H+ V+YK++LSY++IWQI L+   G ++K L+IQ++
Sbjct: 126 GTGMKKMHFFLRHNSVEYKMQLSYENIWQIVLYNSYGQSSKLLVIQLF 173


>ref|XP_006416969.1| hypothetical protein EUTSA_v10006629mg [Eutrema salsugineum]
           gi|557094740|gb|ESQ35322.1| hypothetical protein
           EUTSA_v10006629mg [Eutrema salsugineum]
          Length = 1108

 Score =  156 bits (394), Expect = 7e-36
 Identities = 81/169 (47%), Positives = 111/169 (65%), Gaps = 3/169 (1%)
 Frame = -1

Query: 675 VSGFPAHVSAKVVKDFLEGYTGDGTVYALKIRKHKGSNPRAFAVVQFTTTKCAEEIYLIN 496
           V GFP  VS + VK+FLE  TG GTVYA+K+R+ K   PR +A+VQFT  + A   ++I 
Sbjct: 7   VFGFPGGVSGEEVKNFLERETGSGTVYAIKVRQPKKGGPRVYAIVQFTNERHAR--WIIT 64

Query: 495 RR---LYYGTSYLTVRKMERDIVPKPRAPLLSLNVTALHFGCQVSDERFFSLWKGIDAVV 325
           R    LYYG SYL   ++E+DIVPKPRA L  ++   ++FGCQV+ ++   LW   +  V
Sbjct: 65  RAEEGLYYGRSYLKASEVEQDIVPKPRASLHKISDLKIYFGCQVTPKKLSVLWSAQNVCV 124

Query: 324 EFGFGFRKVEFLLSHDHVDYKLELSYDSIWQIQLHRPGGLNAKFLIIQV 178
            FG G RK+ F +S    DY+LEL Y++IW+I L+ P G  +KFL+IQV
Sbjct: 125 SFGTGMRKLHFSISWYEKDYRLELPYENIWRIDLYSPQGRASKFLVIQV 173