BLASTX nr result
ID: Cocculus22_contig00006535
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00006535
(2044 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-... 429 e-150
emb|CBI40014.3| unnamed protein product [Vitis vinifera] 426 e-149
ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cac... 418 e-147
ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-... 415 e-147
ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citr... 413 e-146
ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-... 394 e-142
gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis] 399 e-140
ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-... 389 e-139
ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative ... 387 e-136
ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trich... 390 e-136
ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [A... 379 e-135
ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-... 371 e-133
ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-... 372 e-133
gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus... 373 e-133
emb|CAD20831.2| sigma factor [Spinacia oleracea] 370 e-132
ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-... 356 e-129
ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutr... 362 e-129
ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arab... 365 e-129
ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis tha... 364 e-128
dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SI... 364 e-128
>ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 429 bits (1103), Expect(2) = e-150
Identities = 243/467 (52%), Positives = 292/467 (62%), Gaps = 7/467 (1%)
Frame = +2
Query: 80 MACLLPQFKCPPDNASTIHLKSY--CNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVVD 253
M+CLLPQFKCPPD ST H K + C + + R R QC L V+D
Sbjct: 1 MSCLLPQFKCPPDTFST-HPKLHILCKSPKNREAIYFRVQCALSTTSPPLSTSTTA-VLD 58
Query: 254 VGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXX 433
+ KL+LPSLE+H N +A+ R Y+G +GPP +AN EATL E LLT
Sbjct: 59 IEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEA 118
Query: 434 XXXXXXXXXXXQDAAMMISNGPFVMG-----NFTSKSGSTQLERMHISETERFGKMGHST 598
+DAA ++ +F S ++Q R+ +ETER G +G S
Sbjct: 119 VALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDS- 177
Query: 599 LNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXX 778
+ E + + + +S++LEP +E +L E + + I V+S RQ
Sbjct: 178 VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAE 237
Query: 779 XXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXX 958
SA ++SV SGS+SR+KR +LQ VDYSDPLRYLRG GIQ
Sbjct: 238 KASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLL 297
Query: 959 XXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAK 1138
GV+P FAQWAAAAGVDQK LR+R N+GI CKDKM+KSNIRLVISIAK
Sbjct: 298 KLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAK 357
Query: 1139 NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 1318
NYQGAGMN+QDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL
Sbjct: 358 NYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 417
Query: 1319 PFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
PFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL VLL
Sbjct: 418 PFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLL 464
Score = 133 bits (335), Expect(2) = e-150
Identities = 64/73 (87%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADPDAETAE+LLIK+FM++DLEKVL+SL+PREKQV+RWR+GLEDGR KTLQEIGELMGV
Sbjct: 488 IADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGV 547
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 548 SRERIRQIESCAF 560
>emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 426 bits (1095), Expect(2) = e-149
Identities = 242/468 (51%), Positives = 291/468 (62%), Gaps = 8/468 (1%)
Frame = +2
Query: 80 MACLLPQFKCPPDNAST---IHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVV 250
M+CLLPQFKCPPD ST +H+ S + R R QC L V+
Sbjct: 1 MSCLLPQFKCPPDTFSTHPKLHILS-----KNREAIYFRVQCALSTTSPPLSTSTTA-VL 54
Query: 251 DVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXX 430
D+ KL+LPSLE+H N +A+ R Y+G +GPP +AN EATL E LLT
Sbjct: 55 DIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAE 114
Query: 431 XXXXXXXXXXXXQDAAMMISNGPFVMG-----NFTSKSGSTQLERMHISETERFGKMGHS 595
+DAA ++ +F S ++Q R+ +ETER G +G S
Sbjct: 115 AVALAKAAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDS 174
Query: 596 TLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXX 775
+ E + + + +S++LEP +E +L E + + I V+S RQ
Sbjct: 175 -VGAETGMVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAA 233
Query: 776 XXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXX 955
SA ++SV SGS+SR+KR +LQ VDYSDPLRYLRG GIQ
Sbjct: 234 EKASAGVVSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDL 293
Query: 956 XXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIA 1135
GV+P FAQWAAAAGVDQK LR+R N+GI CKDKM+KSNIRLVISIA
Sbjct: 294 LKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIA 353
Query: 1136 KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 1315
KNYQGAGMN+QDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 354 KNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 413
Query: 1316 LPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
LPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL VLL
Sbjct: 414 LPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLL 461
Score = 133 bits (335), Expect(2) = e-149
Identities = 64/73 (87%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADPDAETAE+LLIK+FM++DLEKVL+SL+PREKQV+RWR+GLEDGR KTLQEIGELMGV
Sbjct: 485 IADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGV 544
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 545 SRERIRQIESCAF 557
>ref|XP_007029868.1| RNApolymerase sigma subunit 2 [Theobroma cacao]
gi|508718473|gb|EOY10370.1| RNApolymerase sigma subunit 2
[Theobroma cacao]
Length = 623
Score = 418 bits (1075), Expect(2) = e-147
Identities = 255/508 (50%), Positives = 292/508 (57%), Gaps = 48/508 (9%)
Frame = +2
Query: 80 MACLLPQFKCPPDNAS----TIHLKSY-----------------CNNLRT---------- 166
M+CLLPQFKC PD S T H + C NL
Sbjct: 1 MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60
Query: 167 ------RHLGCSRAQCILXXXXXXXXXXXXXXVVDVGKLQLPSLEAHPNCLASDRTLAYV 328
H+ C R QC+L V+DV KL+LPS EAHPN +A DR Y+
Sbjct: 61 VLAKHKEHI-CFRTQCVLSTTSSSTSTTATA-VLDVEKLRLPSFEAHPNSVAVDRPWTYI 118
Query: 329 GAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXXXXXXXXXXQDAAMMISNG---- 496
GA GPP +A+ ATL + LLT +DAA+M N
Sbjct: 119 GATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAK 178
Query: 497 -------PFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPNEEHLMHFSRNN 655
F +FTSK +E ER G +G S + E E+ S
Sbjct: 179 TEMKSGVSFATDSFTSKWAL-------FTEAERAGIIGDSPTD-ESEMEEDDSEQNSTTE 230
Query: 656 SENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXXSANLISVNSGSSSRKKR 835
S+ LEP ++E + E QL+ I V+S RQT +AN++SV SGS++RK+R
Sbjct: 231 SDELEPTNEELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRR 290
Query: 836 AALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXXXXXXXXXXXXXXCGVQPIF 1015
ALQ VDYSDPLRYLRG GIQ CG QP F
Sbjct: 291 GALQDVDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTF 350
Query: 1016 AQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 1195
AQWAAAAGVDQK LR RLN+G+ CKDKM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRG
Sbjct: 351 AQWAAAAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRG 410
Query: 1196 LVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLY 1375
LV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLY
Sbjct: 411 LVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLY 470
Query: 1376 SENGRHPDNEEVAEATGLSMKRLTTVLL 1459
SENGRHPDNEEVAEATGLSMKRLT VLL
Sbjct: 471 SENGRHPDNEEVAEATGLSMKRLTAVLL 498
Score = 134 bits (336), Expect(2) = e-147
Identities = 64/73 (87%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AETAED+LIK+FM++DLEKVLDSLS RE+QV+RWRFG+EDGRMKTLQEIGELMGV
Sbjct: 530 IADPEAETAEDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGV 589
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 590 SRERIRQIESCAF 602
>ref|XP_006484754.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Citrus
sinensis]
Length = 605
Score = 415 bits (1067), Expect(2) = e-147
Identities = 243/482 (50%), Positives = 295/482 (61%), Gaps = 11/482 (2%)
Frame = +2
Query: 47 TQTTYHFANRRMACLLPQFKCPPDNASTIHLKSYCNNL-------RTRHLGCSRAQCILX 205
TQ + N+ M+CLLPQFKC PD S IH ++ N+ +++ C R C+L
Sbjct: 13 TQISTSSFNKNMSCLLPQFKCQPDTFS-IHFRTLHNHQHHSSHPSKSKEPICFRTHCVLS 71
Query: 206 XXXXXXXXXXXXXVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEA 385
V+DV KL+LPSLEAH N +A++R Y GA+GP + N +L E
Sbjct: 72 TTSPSTSTAMTT-VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATET 130
Query: 386 LLTGXXXXXXXXXXXXXXXXXXXXXXXQDAAMMISNG----PFVMGNFTSKSGSTQLERM 553
L T +DAA+M+++ P + + +
Sbjct: 131 L-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWA 189
Query: 554 HISETERFGKMGHSTLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKS 733
++E ER +G S + VE P EE+ N S +LEP +E KL E Q++ I V+S
Sbjct: 190 QLTERERASIIGDSVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRS 248
Query: 734 GRQTXXXXXXXXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXX 913
RQT +AN++SV SGS+SR+KR ++Q VDYSDPLRYLR
Sbjct: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
Query: 914 XXXXXXXXXGIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKD 1093
GIQ CG P FAQWAAAAGVDQ+ LR+RLN+GILCKD
Sbjct: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
Query: 1094 KMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQ 1273
KM+ SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQ
Sbjct: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
Query: 1274 AVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTV 1453
AVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL V
Sbjct: 429 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAV 488
Query: 1454 LL 1459
LL
Sbjct: 489 LL 490
Score = 135 bits (341), Expect(2) = e-147
Identities = 67/73 (91%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AETAEDLLIKKFMK+DLEKVLD+L+PRE+QVVRWRFGLEDGRMKTLQEIGELMGV
Sbjct: 514 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 573
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIES AF
Sbjct: 574 SRERIRQIESSAF 586
>ref|XP_006437338.1| hypothetical protein CICLE_v10030998mg [Citrus clementina]
gi|557539534|gb|ESR50578.1| hypothetical protein
CICLE_v10030998mg [Citrus clementina]
Length = 605
Score = 413 bits (1061), Expect(2) = e-146
Identities = 241/482 (50%), Positives = 296/482 (61%), Gaps = 11/482 (2%)
Frame = +2
Query: 47 TQTTYHFANRRMACLLPQFKCPPDNASTIHLKSYCNNL-------RTRHLGCSRAQCILX 205
TQ + N+ M+CLLPQFKC PD S IH ++ N+ +++ C R C+L
Sbjct: 13 TQISTSSFNKNMSCLLPQFKCQPDTFS-IHFRTLHNHQHHSSHPSKSKEPICFRTHCVLS 71
Query: 206 XXXXXXXXXXXXXVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEA 385
V+DV KL+LPSLEAH N +A++R Y GA+GP + N +L E
Sbjct: 72 TTSPSTSTAMTT-VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATET 130
Query: 386 LLTGXXXXXXXXXXXXXXXXXXXXXXXQDAAMMISNG----PFVMGNFTSKSGSTQLERM 553
L T +DAA+M+++ P + + ++
Sbjct: 131 L-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTSTSMWA 189
Query: 554 HISETERFGKMGHSTLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKS 733
++E ER +G S + VE P EE+ N S +LEP +E KL E Q++ I V+S
Sbjct: 190 QLTERERASIIGDSVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRS 248
Query: 734 GRQTXXXXXXXXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXX 913
RQT +AN++SV SGS++R+KR ++Q VDYSDPLRYLR
Sbjct: 249 RRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQEVDYSDPLRYLRATTSSSRLLT 308
Query: 914 XXXXXXXXXGIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKD 1093
GIQ CG P FAQWAAAAGVDQ+ LR+RLN+GILCKD
Sbjct: 309 ANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKD 368
Query: 1094 KMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQ 1273
KM+ SNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQ
Sbjct: 369 KMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQ 428
Query: 1274 AVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTV 1453
AVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVA+ATGLSMKRL V
Sbjct: 429 AVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAKATGLSMKRLHAV 488
Query: 1454 LL 1459
LL
Sbjct: 489 LL 490
Score = 135 bits (341), Expect(2) = e-146
Identities = 67/73 (91%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AETAEDLLIKKFMK+DLEKVLD+L+PRE+QVVRWRFGLEDGRMKTLQEIGELMGV
Sbjct: 514 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 573
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIES AF
Sbjct: 574 SRERIRQIESSAF 586
>ref|XP_004303327.1| PREDICTED: RNA polymerase sigma factor sigB-like [Fragaria vesca
subsp. vesca]
Length = 616
Score = 394 bits (1011), Expect(2) = e-142
Identities = 221/410 (53%), Positives = 263/410 (64%), Gaps = 5/410 (1%)
Frame = +2
Query: 245 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 424
++D+ + LPSL + + L +R Y GAIGPP +AN A L E LLT
Sbjct: 95 LLDMEEFSLPSLTVNSDSLIVNRPWTYTGAIGPPTEANYGAALATETLLTSEEAVIAAAA 154
Query: 425 XXXXXXXXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERMHIS-----ETERFGKMG 589
+D A+++SN + S S HI+ ETE ++G
Sbjct: 155 AEAVTLAKAALKVAKDVALLVSNNHYAKVE-NSSPVSCGTSAFHINWAQHLETEPTLRIG 213
Query: 590 HSTLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXX 769
S + E E+H + + N SEN+EP ++E +L + QL+ I +S RQT
Sbjct: 214 DSMAS-ETALVEDHFLQIAINESENVEPANEEFELLQEQLSNGIAARSSRQTERKARRTR 272
Query: 770 XXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQ 949
+A+++SV SGS+SRKKRA+LQ VD+SDPLRYLR GIQ
Sbjct: 273 AAEKAAASIVSVKSGSTSRKKRASLQDVDHSDPLRYLRATTHTSRLLTANEEIELSEGIQ 332
Query: 950 XXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVIS 1129
CG QP FAQWAAAAGVDQK LRKR+N+GI+CKDKM+KSNIRLVIS
Sbjct: 333 ELLKLEKLQEDLAQRCGTQPTFAQWAAAAGVDQKTLRKRVNYGIMCKDKMIKSNIRLVIS 392
Query: 1130 IAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 1309
IAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT
Sbjct: 393 IAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRT 452
Query: 1310 IRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
IRLPFHMV+ATYRVREAKKQLYS NGRHP++EEVAEATGLSMKRL VLL
Sbjct: 453 IRLPFHMVEATYRVREAKKQLYSVNGRHPNDEEVAEATGLSMKRLAAVLL 502
Score = 142 bits (358), Expect(2) = e-142
Identities = 69/73 (94%), Positives = 73/73 (100%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADPDAETAEDLL+KKFMKQDLEKVLDSL+PREKQV+RWRFG+EDGRMKTLQEIGELMGV
Sbjct: 526 IADPDAETAEDLLMKKFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGV 585
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 586 SRERIRQIESCAF 598
>gb|EXB70625.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 574
Score = 399 bits (1024), Expect(2) = e-140
Identities = 232/466 (49%), Positives = 285/466 (61%), Gaps = 6/466 (1%)
Frame = +2
Query: 80 MACLLPQFKCPPDNAST-IHLKSYCNNLRTRHLGCSR-----AQCILXXXXXXXXXXXXX 241
M+CLLPQF C PD S + +++ HL +R AQC+L
Sbjct: 1 MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSLAQCVLSTTSPSTSVGATY 60
Query: 242 XVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXX 421
V+ V KL+ PSL+A+ + S+R Y GA GPP +AN EATL E LLT
Sbjct: 61 -VLSVEKLRFPSLDANSESVTSNRPWTYTGATGPPVEANFEATLATETLLTSEEAVIAAA 119
Query: 422 XXXXXXXXXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTL 601
+DAA+++ P S S E +I + ++ S L
Sbjct: 120 AAEAVTLAKAAVKVAKDAALLVR--PSTRAESISLVSS---EARNIKTAQAASRVRDS-L 173
Query: 602 NVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXX 781
EM E+H + S +L+P ++E ++ + QL+ I V+S RQ+
Sbjct: 174 RAEMALIEDHPPKDAAKESNDLQPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEK 233
Query: 782 XSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXXX 961
+AN+++V SGS+SRKKRA++Q VD+SDPLRYLR GIQ
Sbjct: 234 AAANVVAVKSGSNSRKKRASVQDVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLK 293
Query: 962 XXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKN 1141
CG P FAQWAAAAGVDQK LR+R+N+GILCKDKM+KSN+RLVISIAKN
Sbjct: 294 LEKLQEELAERCGGPPTFAQWAAAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKN 353
Query: 1142 YQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 1321
YQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP
Sbjct: 354 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 413
Query: 1322 FHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
FHMV+ATYRV+EA+KQLYSENGR P++EEVAEATGLSMKRL VLL
Sbjct: 414 FHMVEATYRVKEARKQLYSENGRQPNDEEVAEATGLSMKRLAAVLL 459
Score = 130 bits (327), Expect(2) = e-140
Identities = 62/73 (84%), Positives = 70/73 (95%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADPDAET ED+L ++FMKQDL+KVLDSL+ REKQV+RWRFG++DGRMKTLQEIGELMGV
Sbjct: 483 IADPDAETLEDVLTRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGV 542
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 543 SRERIRQIESCAF 555
>ref|XP_006484755.1| PREDICTED: RNA polymerase sigma factor sigB-like isoform X2 [Citrus
sinensis]
Length = 525
Score = 389 bits (1000), Expect(2) = e-139
Identities = 221/409 (54%), Positives = 263/409 (64%), Gaps = 4/409 (0%)
Frame = +2
Query: 245 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 424
V+DV KL+LPSLEAH N +A++R Y GA+GP + N +L E L T
Sbjct: 4 VLDVEKLRLPSLEAHSNAVAANRQWTYFGAVGPSTEENLGTSLATETL-TSDEAVIAAAS 62
Query: 425 XXXXXXXXXXXXXXQDAAMMISNG----PFVMGNFTSKSGSTQLERMHISETERFGKMGH 592
+DAA+M+++ P + + + ++E ER +G
Sbjct: 63 AEAVALARAAVKVAKDAALMVNHHNSAKPKSKPAISLSADTNTSMWAQLTERERASIIGD 122
Query: 593 STLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXX 772
S + VE P EE+ N S +LEP +E KL E Q++ I V+S RQT
Sbjct: 123 SVI-VEAAPEEEYSEQQPLNKSADLEPTHEELKLLEEQVSQSIAVRSRRQTERKARRTRA 181
Query: 773 XXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQX 952
+AN++SV SGS+SR+KR ++Q VDYSDPLRYLR GIQ
Sbjct: 182 AEKAAANVMSVKSGSTSRRKRPSVQEVDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQD 241
Query: 953 XXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISI 1132
CG P FAQWAAAAGVDQ+ LR+RLN+GILCKDKM+ SNIRLVISI
Sbjct: 242 LLKLEGLREVLSERCGGSPTFAQWAAAAGVDQRELRRRLNYGILCKDKMITSNIRLVISI 301
Query: 1133 AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1312
AKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 302 AKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 361
Query: 1313 RLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
RLPFHMV+ATYRV+EA+KQLYSENGRHP+NEEVAEATGLSMKRL VLL
Sbjct: 362 RLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLHAVLL 410
Score = 135 bits (341), Expect(2) = e-139
Identities = 67/73 (91%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AETAEDLLIKKFMK+DLEKVLD+L+PRE+QVVRWRFGLEDGRMKTLQEIGELMGV
Sbjct: 434 IADPEAETAEDLLIKKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGV 493
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIES AF
Sbjct: 494 SRERIRQIESSAF 506
>ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor
rpoD1, putative [Ricinus communis]
Length = 569
Score = 387 bits (995), Expect(2) = e-136
Identities = 232/468 (49%), Positives = 275/468 (58%), Gaps = 8/468 (1%)
Frame = +2
Query: 80 MACLLPQFKCPPDN------ASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXX 241
M+CLLPQFKC PD A+ H + + ++R RAQCIL
Sbjct: 2 MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTA--- 58
Query: 242 XVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXX 421
V+D+ KL+LPS EA + +A + Y A +TL E L+T
Sbjct: 59 -VLDLEKLRLPSFEAPSDSIAPNSPWTY---------ATFGSTLATETLITSDEAVIAAA 108
Query: 422 XXXXXXXXXXXXXXXQDAAMMISNGPFVM--GNFTSKSGSTQLERMHISETERFGKMGHS 595
+DAA+++ N P TS S +ETER +G S
Sbjct: 109 AAEAVALARAAVKVAKDAALLVKNFPSAETESKLTSPSTIDASRWPQFTETERARIIGDS 168
Query: 596 TLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXX 775
E P EE M S S+ LE E +L + QL+ I V+S RQT
Sbjct: 169 VAT-ETGPREESSMQSSIKESDYLELTHKELELLQKQLSEGIAVRSRRQTERKARRARAV 227
Query: 776 XXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXX 955
+++++SV GS+S+KKR +LQ VDYSDPLRYLRG IQ
Sbjct: 228 EKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTSTSRLLTASEELELSAAIQDL 287
Query: 956 XXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIA 1135
G QP FAQWAAAAGVDQ+ LRKR+NHG +CKDKM+KSNIRLVISIA
Sbjct: 288 LKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINHGTICKDKMIKSNIRLVISIA 347
Query: 1136 KNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 1315
KNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR
Sbjct: 348 KNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIR 407
Query: 1316 LPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
LPFHMV+ATYRV+EA+KQLYSENGRHPD+EEVAEA GLSMKRL+ VLL
Sbjct: 408 LPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEAAGLSMKRLSAVLL 455
Score = 129 bits (323), Expect(2) = e-136
Identities = 63/73 (86%), Positives = 71/73 (97%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AETAE+LL+K+FMKQDLEKVL++L+PRE QVVRWRFGLEDGRMKTLQEIGE+MGV
Sbjct: 479 IADPEAETAEELLMKQFMKQDLEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGV 538
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIES AF
Sbjct: 539 SRERIRQIESSAF 551
>ref|XP_002319746.2| SIGMA FACTOR B family protein [Populus trichocarpa]
gi|550325142|gb|EEE95669.2| SIGMA FACTOR B family protein
[Populus trichocarpa]
Length = 567
Score = 390 bits (1001), Expect(2) = e-136
Identities = 229/464 (49%), Positives = 280/464 (60%), Gaps = 4/464 (0%)
Frame = +2
Query: 80 MACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVVDVG 259
M+CLLPQFKC PD S +H ++ ++ T H QC+L V+D+
Sbjct: 1 MSCLLPQFKCQPDTFS-VHFRNLQHH-GTNHT--QLPQCVLSSASPSTA------VLDLE 50
Query: 260 KLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXX 439
KL+LPSLE H + ++++R Y+G IGP KK +L E L+
Sbjct: 51 KLRLPSLEPHSDSISANRPWTYIGGIGPQKKPPFGTSLAAETLIANDEAVIAAAAAEAVA 110
Query: 440 XXXXXXXXXQDAAMMISNGPFVMGN----FTSKSGSTQLERMHISETERFGKMGHSTLNV 607
+DAA M N F+ S + S ++E ER +G S ++
Sbjct: 111 LARAAVKVAKDAAEMAKNYSFMKKETKIPIASTTDSFSSMWSLLTEKERADIIGDS-VSA 169
Query: 608 EMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXXS 787
E EE+ + + + LEP +E L + QL+ I V+S RQT +
Sbjct: 170 ETRLREEYSVQYPTEEYDCLEPTQEELALLQKQLSEGIAVRSKRQTERKARRARAAEKAA 229
Query: 788 ANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXXXXX 967
AN++SV SGS+S+KKR LQ VD SDPLR+ RG GIQ
Sbjct: 230 ANVVSVKSGSTSKKKRVPLQEVDQSDPLRFFRGASSSSRLLSATEEVELSEGIQDLLKLE 289
Query: 968 XXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQ 1147
G +P FAQWAAAAGVDQ LRKRLN+GILCKDKM+KSN+RLVISIAKNYQ
Sbjct: 290 RIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQ 349
Query: 1148 GAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH 1327
G GMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSD+SRTIRLPFH
Sbjct: 350 GTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFH 409
Query: 1328 MVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
MVDATYRV+EA+KQLYSENGRHPD++EVAEA GLSMKRL+ VLL
Sbjct: 410 MVDATYRVKEARKQLYSENGRHPDDKEVAEAAGLSMKRLSAVLL 453
Score = 124 bits (311), Expect(2) = e-136
Identities = 61/72 (84%), Positives = 67/72 (93%)
Frame = +1
Query: 1516 ADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGVS 1695
ADP+AETAEDLL+K+FMK+DL KVL SLSPRE QVVRWRFG+EDGRMKTLQEIGELMGVS
Sbjct: 478 ADPEAETAEDLLMKEFMKKDLAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVS 537
Query: 1696 RERIRQIESCAF 1731
RER+RQIE AF
Sbjct: 538 RERVRQIELSAF 549
>ref|XP_006878613.1| hypothetical protein AMTR_s00011p00258380 [Amborella trichopoda]
gi|548831956|gb|ERM94758.1| hypothetical protein
AMTR_s00011p00258380 [Amborella trichopoda]
Length = 570
Score = 379 bits (974), Expect(2) = e-135
Identities = 217/440 (49%), Positives = 272/440 (61%), Gaps = 6/440 (1%)
Frame = +2
Query: 158 LRTRHLGCSRAQCILXXXXXXXXXXXXXXVVDVGKLQLPSLEAHPNCLASDRTLAYVGAI 337
+RTR C + QC+ VVDV K+++PSL H +++ L YVG I
Sbjct: 26 VRTREATCFQTQCV---------SSTATVVVDVDKVRVPSLGGHSTSVSTHGPLTYVGTI 76
Query: 338 GPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXXXXXXXXXXQDAAMMISNGP----FV 505
G KK + EA LV E+LL +DAA+M+ + P
Sbjct: 77 GSQKKTDFEAALVTESLLKSEEAIIAAAAAEAIALAKAAAKLAKDAALMVGSVPPSRSDK 136
Query: 506 MGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPNEEHLMHFSRNNSENLEPNDDE 685
+ +F S++ +L+R ++E ER G M S++ + P ++H + +E + E
Sbjct: 137 VDDFPSEADILRLQRARLTEMERIGSMDGSSI-AGIGPRDKHKSVNQLSPNEMADKQSRE 195
Query: 686 HKLQEMQL--NVPIDVKSGRQTXXXXXXXXXXXXXSANLISVNSGSSSRKKRAALQVVDY 859
+ L+ +QL + + V+S RQT +AN I+V G++SR+KRA LQ +DY
Sbjct: 196 NILEALQLQHSQRVAVRSRRQTERRARRAKGVEKAAANAITVKLGTTSRRKRAPLQEIDY 255
Query: 860 SDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAG 1039
SDPLRYLRG GIQ G +P F QWAAAAG
Sbjct: 256 SDPLRYLRGTTNSTKLLTATEELELSEGIQDLLKLEKLHKELTERFGGEPTFVQWAAAAG 315
Query: 1040 VDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKF 1219
+DQK LR+RL++G CKDKM+KSNIRLVISIAKNYQG G+++QDLVQEGCRGLV+GAEKF
Sbjct: 316 IDQKALRRRLSYGTHCKDKMIKSNIRLVISIAKNYQGVGLSIQDLVQEGCRGLVRGAEKF 375
Query: 1220 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPD 1399
DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREA KQLYSENGRHP+
Sbjct: 376 DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREATKQLYSENGRHPN 435
Query: 1400 NEEVAEATGLSMKRLTTVLL 1459
+EEVAEATGLSMKRLTTVLL
Sbjct: 436 DEEVAEATGLSMKRLTTVLL 455
Score = 132 bits (332), Expect(2) = e-135
Identities = 65/73 (89%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
I+DP+AETAEDLL+K+FMKQDLEKVL++L+PREKQVVRWRFGLEDGRMKTLQEIGELMGV
Sbjct: 479 ISDPEAETAEDLLMKQFMKQDLEKVLNTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGV 538
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIES AF
Sbjct: 539 SRERIRQIESSAF 551
>ref|XP_004229543.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum
lycopersicum]
Length = 613
Score = 371 bits (952), Expect(2) = e-133
Identities = 212/412 (51%), Positives = 260/412 (63%), Gaps = 7/412 (1%)
Frame = +2
Query: 245 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 424
V + KL+LPS EA+P+ +A DR Y GA+GPP +AN + E L
Sbjct: 92 VPGIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKP----EDSLASEEAIVAAAA 147
Query: 425 XXXXXXXXXXXXXXQDAAMMIS-----NGPFVMGNFTSKSGSTQLERMHISETERFGKMG 589
QDA M++ + V S++ + E +H+++ +G
Sbjct: 148 AEAVALAKAALKGAQDAVMLVGYNNLKDSDNVGRGTLSEARTAPFESVHLAQPGETRGVG 207
Query: 590 H-STLN-VEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXX 763
+ LN EM L + +S++LEP+ +E ++ + QL+ I VKS RQT
Sbjct: 208 VCAELNGSEMKWTGSSLFRDTLTDSDDLEPSHEELEILQSQLSNVIAVKSNRQTERKARR 267
Query: 764 XXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXG 943
+AN++SV SGS+SRKKRA++Q VDYSDPLRYLRG G
Sbjct: 268 AKAVERAAANVVSVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSRG 327
Query: 944 IQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLV 1123
IQ CG QP F QWAAAAGVDQ LRKRLN+GILCKDKM+KSN+RLV
Sbjct: 328 IQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRLV 387
Query: 1124 ISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQS 1303
ISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQS
Sbjct: 388 ISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQS 447
Query: 1304 RTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
RTIRLPFHMV+ATYRV+EA+KQL +ENGRHP++ EVAEATGLSMKRL V+L
Sbjct: 448 RTIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEATGLSMKRLAAVML 499
Score = 134 bits (338), Expect(2) = e-133
Identities = 64/73 (87%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
+ADPDAET+E++L K+FM+QDLEKVLD+L+PREKQVVRWRFGLEDGRMKTLQEIGELMGV
Sbjct: 523 LADPDAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGV 582
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 583 SRERIRQIESCAF 595
>ref|XP_006359117.1| PREDICTED: RNA polymerase sigma factor sigB-like [Solanum tuberosum]
Length = 613
Score = 372 bits (954), Expect(2) = e-133
Identities = 213/413 (51%), Positives = 259/413 (62%), Gaps = 8/413 (1%)
Frame = +2
Query: 245 VVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXX 424
V D+ KL+LPS EA+P+ +A DR Y GA+GPP +AN + E L
Sbjct: 92 VPDIQKLKLPSFEANPDSVAPDRPWTYTGAVGPPAEANTKP----ENSLASEEAIVAAAA 147
Query: 425 XXXXXXXXXXXXXXQDAAMMIS----NGPFVMGNFT-SKSGSTQLERMHIS---ETERFG 580
QDA M++ N +G T S++ + E +H++ ET R G
Sbjct: 148 AEAVALAKAALKGAQDAVMLVGYNNLNDSDNVGRGTLSEARTAPFESVHLAQPGETRRVG 207
Query: 581 KMGHSTLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXX 760
EM L + +S++LEP+ +E ++ + QL+ I VKS RQT
Sbjct: 208 VCAELN-GSEMKWTGSSLFRETLTDSDDLEPSPEELEILQSQLSNVIAVKSNRQTERKAK 266
Query: 761 XXXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXX 940
+AN+++V SGS+SRKKRA++Q VDYSDPLRYLRG
Sbjct: 267 RAKSVEKAAANVVTVKSGSTSRKKRASVQDVDYSDPLRYLRGTTCSSRLLTASEEQELSR 326
Query: 941 GIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRL 1120
GIQ CG QP F QWAAAAGVDQ LRKRLN+GILCKDKM+KSN+RL
Sbjct: 327 GIQDLLKLERLQVELTERCGGQPTFTQWAAAAGVDQMTLRKRLNYGILCKDKMIKSNVRL 386
Query: 1121 VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 1300
VISIAKNYQG GMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 387 VISIAKNYQGVGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 446
Query: 1301 SRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
SR IRLPFHMV+ATYRV+EA+KQL +ENGRHP++ EVAEA GLSMKRL V+L
Sbjct: 447 SRMIRLPFHMVEATYRVKEARKQLLTENGRHPNDAEVAEAAGLSMKRLAAVML 499
Score = 133 bits (334), Expect(2) = e-133
Identities = 63/73 (86%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
+ADP+AET+E++L K+FM+QDLEKVLD+L+PREKQVVRWRFGLEDGRMKTLQEIGELMGV
Sbjct: 523 LADPEAETSEEILTKQFMRQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGV 582
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 583 SRERIRQIESCAF 595
>gb|EYU27177.1| hypothetical protein MIMGU_mgv1a003367mg [Mimulus guttatus]
Length = 589
Score = 373 bits (958), Expect(2) = e-133
Identities = 228/491 (46%), Positives = 285/491 (58%), Gaps = 31/491 (6%)
Frame = +2
Query: 80 MACLLPQFKCPPDNASTIHLKSYC----NNLRTRHLGCSRAQCILXXXXXXXXXXXXXXV 247
M+CLLPQFKC PD + ++ KS ++ ++R R QC+L +
Sbjct: 1 MSCLLPQFKCSPDTFA-VNFKSQTLFTVHSSKSRESINFRTQCVLSTTSPPPTMAATTTL 59
Query: 248 VDVGKLQLPSLEAHPNCLASDR--------------------------TLAYVGAIGPPK 349
++ KLQL LE PN L +DR TL YVG++GPP
Sbjct: 60 LEFEKLQLSPLETIPNSLPADRSWTTPRAKTSLLDLDKLTSLPVASNKTLTYVGSVGPPS 119
Query: 350 KANGEATLVNEALLTGXXXXXXXXXXXXXXXXXXXXXXXQDAAMMISNGPFVMGNFTS-K 526
+ N A L EAL+T +DAAMM+S + S
Sbjct: 120 EINLGANLDKEALITSDEAVITAAASEALALAKAAVKVAKDAAMMVSLHRSTKPDTKSFL 179
Query: 527 SGSTQLERMHISETERFGKMGHSTLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQ 706
T ER+ + E E I + E+ H + ++ EP+ +E +L ++Q
Sbjct: 180 EVDTSAERVVVREAE--------------IGSGENDDHVLGESDDSEEPSAEELELLDLQ 225
Query: 707 LNVPIDVKSGRQTXXXXXXXXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRG 886
L+ I V+S RQ +AN++SV SGSS +KKR+ +Q VDYSDPLRYLR
Sbjct: 226 LSSSIAVRSKRQIERKVRRGRAAEKAAANVVSVKSGSS-KKKRSPVQEVDYSDPLRYLRA 284
Query: 887 XXXXXXXXXXXXXXXXXXGIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKR 1066
GIQ G +P ++QWAAAAGVDQK LR++
Sbjct: 285 TTSSTRLLTASEEQVLSEGIQVLLKLERLQVELIERFGGEPSYSQWAAAAGVDQKTLREQ 344
Query: 1067 LNHGILCKDKMVKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFS 1246
+N+GILCKDKM+KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFS
Sbjct: 345 INYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFS 404
Query: 1247 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATG 1426
TYAHWWIKQAVRKSLSDQSRTIRLPFHMV+ATYRV+EA+KQLYSENGR P++EEVAEATG
Sbjct: 405 TYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRVPNDEEVAEATG 464
Query: 1427 LSMKRLTTVLL 1459
LSMKRL+ V+L
Sbjct: 465 LSMKRLSAVML 475
Score = 130 bits (328), Expect(2) = e-133
Identities = 62/73 (84%), Positives = 71/73 (97%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
I+DP+AET+E+LLIK+FMKQDL VLDSL+PREKQVV+WRFG+EDGRMKTLQEIGELMGV
Sbjct: 499 ISDPEAETSEELLIKQFMKQDLADVLDSLNPREKQVVKWRFGIEDGRMKTLQEIGELMGV 558
Query: 1693 SRERIRQIESCAF 1731
SRER+RQIESCAF
Sbjct: 559 SRERVRQIESCAF 571
>emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 370 bits (950), Expect(2) = e-132
Identities = 216/469 (46%), Positives = 271/469 (57%), Gaps = 9/469 (1%)
Frame = +2
Query: 80 MACLLPQFKCPPDN---ASTIHLKSYCNN----LRTRHLGCSRAQCILXXXXXXXXXXXX 238
M CLLPQFKC PD +S +H S ++ LR R L C R QC +
Sbjct: 1 MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60
Query: 239 XXVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXX 418
+ DV KL+LP +E++ N L++ ++ +G P + + L + L+
Sbjct: 61 S-IFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVKFDTALTAKLLIENEEAVIAA 119
Query: 419 XXXXXXXXXXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHST 598
+DAA+M N + S + E E+ G M +
Sbjct: 120 AAAEAVALARAAAKLAKDAALMAFNSQPTKPVSKLEGQSLHFSGAQLLENEQVGSMRN-- 177
Query: 599 LNVEMIPNEEHLMHFSRNNSE--NLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXX 772
E+ + SE ++EP +E +L E++L+ I V+S RQ
Sbjct: 178 -----FEGSENSLREGDTVSEPADMEPTIEELQLLEVELDESITVRSTRQGERKARRARA 232
Query: 773 XXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQX 952
++N++SV GS+SRKKR ++Q VDYSDPLRYLRG GIQ
Sbjct: 233 AEKVASNVVSVKVGSNSRKKRTSVQEVDYSDPLRYLRGATNSSRLLTSSEETELSAGIQD 292
Query: 953 XXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISI 1132
G P F QWAAAAG+DQ+ LR+RLNHG CKDKM+KSN+RLVISI
Sbjct: 293 LLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGTFCKDKMIKSNVRLVISI 352
Query: 1133 AKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 1312
AKNYQG+GMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI
Sbjct: 353 AKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTI 412
Query: 1313 RLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
RLPFHMV+ATYRV+EA+KQL SENG+ P+NEEVAEATGLSMKRLT VL+
Sbjct: 413 RLPFHMVEATYRVKEARKQLLSENGKQPNNEEVAEATGLSMKRLTAVLM 461
Score = 131 bits (330), Expect(2) = e-132
Identities = 67/90 (74%), Positives = 73/90 (81%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AETAEDLL K+FM+QDLEKVLD+LS REKQV+RWRFGLEDGRMKTLQEIGELMGV
Sbjct: 485 IADPEAETAEDLLTKQFMRQDLEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGV 544
Query: 1693 SRERIRQIESCAFXXXXXXXXXXXXXXYLF 1782
SRERIRQIES AF Y+F
Sbjct: 545 SRERIRQIESSAFRKLQNKKKTINLQQYMF 574
>ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA
polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 356 bits (914), Expect(2) = e-129
Identities = 219/479 (45%), Positives = 277/479 (57%), Gaps = 19/479 (3%)
Frame = +2
Query: 80 MACLLPQFKCPPDNASTIHLKS--------------YCNNLRTRHLGCSRAQCILXXXXX 217
M+CLLPQFKC P+ S I K+ Y + + R R QCIL
Sbjct: 1 MSCLLPQFKCHPETFS-IQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASP 59
Query: 218 XXXXXXXXXVVDVGKLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTG 397
+DV +L+LP + + + ++ +R +Y+GA+ E++L + LLT
Sbjct: 60 PTSTGTAT-TLDVDRLKLPPFDTNTDSVSVERLRSYLGAV--------ESSLAS-TLLTS 109
Query: 398 XXXXXXXXXXXXXXXXXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERMHIS----- 562
+DAA++ +N S+S S + + +H
Sbjct: 110 EEASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQS-SPKPDALHFKWAQFM 168
Query: 563 ETERFGKMGHSTLNVEMIPNEEHLMHFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQ 742
E+ER +G + V P E + S S+++EP +E +L + +L+ I VKS RQ
Sbjct: 169 ESERADIIGEP-VGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQ 227
Query: 743 TXXXXXXXXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXX 922
T +++S SGSSSRKKR ++Q VDYSDPLRYLR
Sbjct: 228 TERKARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATE 287
Query: 923 XXXXXXGIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMV 1102
GIQ G +P FAQWAAAAGV+Q+ LRKRLN+G LCKDKM+
Sbjct: 288 ELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMI 347
Query: 1103 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVR 1282
KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDASKGFKFSTYAHWWIKQAVR
Sbjct: 348 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 407
Query: 1283 KSLSDQSRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
K LSDQSRTIRLPFHMV+ATYRV+EA+KQL ENGRHPD++E+AEA GLSMKRL VL+
Sbjct: 408 KFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLM 466
Score = 136 bits (342), Expect(2) = e-129
Identities = 64/73 (87%), Positives = 72/73 (98%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
I+DP+AET ED+LIK+FMKQDLEKVLDSL+PREKQV+RWRFG+EDGRMKTLQEIGE+MGV
Sbjct: 490 ISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGV 549
Query: 1693 SRERIRQIESCAF 1731
SRERIRQIESCAF
Sbjct: 550 SRERIRQIESCAF 562
>ref|XP_006417677.1| hypothetical protein EUTSA_v10007187mg [Eutrema salsugineum]
gi|557095448|gb|ESQ36030.1| hypothetical protein
EUTSA_v10007187mg [Eutrema salsugineum]
Length = 579
Score = 362 bits (928), Expect(2) = e-129
Identities = 219/473 (46%), Positives = 271/473 (57%), Gaps = 14/473 (2%)
Frame = +2
Query: 83 ACLLPQFKCPPDNASTIHLK-SYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVVDVG 259
+CLLPQFKC PD+ S IH K SY + + + QC + ++DV
Sbjct: 3 SCLLPQFKCQPDSFS-IHFKTSYSLSKHNKGSVFFQPQCAVSTSPPLLTS-----MLDVA 56
Query: 260 KLQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXX 439
KL+LPS + + SDR Y G +GP +A L +E LLT
Sbjct: 57 KLRLPSFDTDSDSRISDRQWTYTGTVGPSTEAKYLEALASETLLTSDEAVVAAAAAEAVA 116
Query: 440 XXXXXXXXXQDAAMMIS--NGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEM 613
+DA + N V+ + K +E ER G +GH ++
Sbjct: 117 LARAAVKVAKDATSFRNSYNTKVVVSSAADKRSKWD----QFTEKERAGILGHLAVSDTG 172
Query: 614 IPNEEHLM-----------HFSRNNSENLEPNDDEHKLQEMQLNVPIDVKSGRQTXXXXX 760
+ +++ + +S +L+ E +L E QL+V V+S RQT
Sbjct: 173 VVSDKSTAPAPAPAPAPAPDCNNESSGDLKSEKQEVELLEEQLSVSSAVRSTRQTERKAR 232
Query: 761 XXXXXXXXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXX 940
++++ SV +GSSSRKKRA Q VD++DPLRYLR
Sbjct: 233 RAKGLEKTASSMQSVKTGSSSRKKRAPSQEVDHNDPLRYLRMTTSSSKLLTAREEQELSE 292
Query: 941 GIQXXXXXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRL 1120
GIQ CG QP FAQWA+AAGVDQK LRKR+N+G CKD+M+KSNIRL
Sbjct: 293 GIQDLLKLERLQAELTERCGHQPTFAQWASAAGVDQKSLRKRINYGTQCKDRMIKSNIRL 352
Query: 1121 VISIAKNYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 1300
VISIAKNYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQ
Sbjct: 353 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQ 412
Query: 1301 SRTIRLPFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
SR IRLPFHMV+ATYRV+EA+KQLYSE G+ P+NEEVAEATGLSMKRL VLL
Sbjct: 413 SRMIRLPFHMVEATYRVKEARKQLYSETGKQPENEEVAEATGLSMKRLMAVLL 465
Score = 128 bits (321), Expect(2) = e-129
Identities = 61/73 (83%), Positives = 70/73 (95%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+AET+ED+LIK+FM+QDL+KVLDSLS REKQV+RWRFG+EDGRMKTLQEIGE MGV
Sbjct: 489 IADPEAETSEDILIKQFMRQDLDKVLDSLSTREKQVIRWRFGMEDGRMKTLQEIGETMGV 548
Query: 1693 SRERIRQIESCAF 1731
SRER+RQIES AF
Sbjct: 549 SRERVRQIESSAF 561
>ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata] gi|297335543|gb|EFH65960.1| hypothetical protein
ARALYDRAFT_470915 [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 365 bits (936), Expect(2) = e-129
Identities = 215/461 (46%), Positives = 266/461 (57%), Gaps = 2/461 (0%)
Frame = +2
Query: 83 ACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVVDVGK 262
+CLLPQFKCPPD+ S S+C + + QC + ++DV K
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCARKHNKGSVFFQPQCAVSTSPALLTS-----MLDVAK 57
Query: 263 LQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXX 442
L+LPS + + SDR Y GP +A L +E LLT
Sbjct: 58 LRLPSFDTDSDSRISDRQWTYTRTDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 117
Query: 443 XXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPN 622
+DA + ++ + S + + + +E ER G +GH ++ I +
Sbjct: 118 ARAAVKVAKDATLFKNSNNTNL--LISSTADKRSKWDQFTEKERAGILGHLAVSDNGIVS 175
Query: 623 EEHLMHFSRNNSE-NLEPNDDEH-KLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXXSANL 796
++ S S +LE E +L E Q +V + V+S RQT ++ +
Sbjct: 176 DKITAPASNKESPGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGI 235
Query: 797 ISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXXXXXXXX 976
SV +GS+ RKKR Q VD++DPLRYLR GIQ
Sbjct: 236 PSVKTGSNPRKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLERLQ 295
Query: 977 XXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQGAG 1156
CG QP FAQWA+AAGVDQK LRKR++HG LCKDKM+KSNIRLVISIAKNYQGAG
Sbjct: 296 TELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGTLCKDKMIKSNIRLVISIAKNYQGAG 355
Query: 1157 MNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVD 1336
MNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMV+
Sbjct: 356 MNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVE 415
Query: 1337 ATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
ATYRV+EA+KQLYSE G+HP NEE+AEATGLSMKRL VLL
Sbjct: 416 ATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 456
Score = 125 bits (313), Expect(2) = e-129
Identities = 59/73 (80%), Positives = 69/73 (94%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+A T+ED+LIK+FM+QDL+KVLDSL REKQV+RWRFG+EDGRMKTLQEIGE+MGV
Sbjct: 480 IADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 539
Query: 1693 SRERIRQIESCAF 1731
SRER+RQIES AF
Sbjct: 540 SRERVRQIESSAF 552
>ref|NP_172330.1| RNA polymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA
polymerase sigma factor sigB; Short=Sigma factor B;
Short=Sigma-B; AltName: Full=Protein ABERRANT CHLOROPLAST
1; AltName: Full=RNA polymerase sigma factor sig1;
Short=Atsig1; Short=Sigma factor 1; AltName: Full=RNA
polymerase sigma factor sig2; Short=Atsig2; Short=Sigma
factor 2; AltName: Full=RNA polymerase sigma factor sigA;
Short=Sigma factor A; Short=Sigma-A; Flags: Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22
[Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis
thaliana] gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis
thaliana] gi|2597831|emb|CAA75584.1| sigma factor
[Arabidopsis thaliana] gi|2879922|dbj|BAA24825.1| plastid
RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis
thaliana] gi|133778838|gb|ABO38759.1| At1g08540
[Arabidopsis thaliana] gi|332190182|gb|AEE28303.1| RNA
polymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 364 bits (934), Expect(2) = e-128
Identities = 214/463 (46%), Positives = 270/463 (58%), Gaps = 4/463 (0%)
Frame = +2
Query: 83 ACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVVDVGK 262
+CLLPQFKCPPD+ S S+C + + QC + ++DV K
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTS-----MLDVAK 57
Query: 263 LQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXX 442
L+LPS + + L SDR Y GP +A L +E LLT
Sbjct: 58 LRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 117
Query: 443 XXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERMHISETERFGKMGHSTLNVEMIPN 622
+DA + ++ + TS + + + +E ER G +GH ++ I +
Sbjct: 118 ARAAVKVAKDATLFKNSNNTNL--LTSSTADKRSKWDQFTEKERAGILGHLAVSDNGIVS 175
Query: 623 EEHLMHFSRNNSENL----EPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXXXXSA 790
++ + S +N E++ +E +L E Q +V + V+S RQT ++
Sbjct: 176 DK--ITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTRQTERKARRAKGLEKTAS 233
Query: 791 NLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXXXXXX 970
+ SV +GSS +KKR Q VD++DPLRYLR GIQ
Sbjct: 234 GIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLLKLER 293
Query: 971 XXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAKNYQG 1150
G QP FAQWA+AAGVDQK LR+R++HG LCKDKM+KSNIRLVISIAKNYQG
Sbjct: 294 LQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAKNYQG 353
Query: 1151 AGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHM 1330
AGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHM
Sbjct: 354 AGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHM 413
Query: 1331 VDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
V+ATYRV+EA+KQLYSE G+HP NEE+AEATGLSMKRL VLL
Sbjct: 414 VEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 456
Score = 125 bits (313), Expect(2) = e-128
Identities = 59/73 (80%), Positives = 69/73 (94%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+A T+ED+LIK+FM+QDL+KVLDSL REKQV+RWRFG+EDGRMKTLQEIGE+MGV
Sbjct: 480 IADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 539
Query: 1693 SRERIRQIESCAF 1731
SRER+RQIES AF
Sbjct: 540 SRERVRQIESSAF 552
>dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 364 bits (934), Expect(2) = e-128
Identities = 216/467 (46%), Positives = 271/467 (58%), Gaps = 8/467 (1%)
Frame = +2
Query: 83 ACLLPQFKCPPDNASTIHLKSYCNNLRTRHLGCSRAQCILXXXXXXXXXXXXXXVVDVGK 262
+CLLPQFKCPPD+ S S+C + + QC + ++DV K
Sbjct: 3 SCLLPQFKCPPDSFSIHFRTSFCAPKHNKGSVFFQPQCAVSTSPALLTS-----MLDVAK 57
Query: 263 LQLPSLEAHPNCLASDRTLAYVGAIGPPKKANGEATLVNEALLTGXXXXXXXXXXXXXXX 442
L+LPS + + L SDR Y GP +A L +E LLT
Sbjct: 58 LRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEAVVVAAAAEAVAL 117
Query: 443 XXXXXXXXQDAAMMISNGPFVMGNFTSKSGSTQLERM----HISETERFGKMGHSTLNVE 610
+DA + F N+T+ S+ ++ +E ER G +GH ++
Sbjct: 118 ARAAVKVAKDATL------FKNSNYTNLLTSSTADKRSKWDQFTEKERAGILGHLAVSDN 171
Query: 611 MIPNEEHLMHFSRNNSENL----EPNDDEHKLQEMQLNVPIDVKSGRQTXXXXXXXXXXX 778
I +++ + S +N E++ +E +L E Q +V + V+S RQT
Sbjct: 172 GIVSDK--ITASASNKESIGDLESEKQEEVELLEEQPSVGLAVRSTRQTERKARRAKGLE 229
Query: 779 XXSANLISVNSGSSSRKKRAALQVVDYSDPLRYLRGXXXXXXXXXXXXXXXXXXGIQXXX 958
++ + SV +GSS +KKR Q VD++DPLRYLR GIQ
Sbjct: 230 KTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVREEHELSAGIQDLL 289
Query: 959 XXXXXXXXXXXXCGVQPIFAQWAAAAGVDQKILRKRLNHGILCKDKMVKSNIRLVISIAK 1138
G QP FAQWA+AAGVDQK LR+R++HG LCKDKM+KSNIRLVISIAK
Sbjct: 290 KLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVISIAK 349
Query: 1139 NYQGAGMNLQDLVQEGCRGLVKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 1318
NYQGAGMNLQDLVQEGCRGLV+GAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRL
Sbjct: 350 NYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRMIRL 409
Query: 1319 PFHMVDATYRVREAKKQLYSENGRHPDNEEVAEATGLSMKRLTTVLL 1459
PFHMV+ATYRV+EA+KQLYSE G+HP NEE+AEATGLSMKRL VLL
Sbjct: 410 PFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 456
Score = 124 bits (311), Expect(2) = e-128
Identities = 59/73 (80%), Positives = 68/73 (93%)
Frame = +1
Query: 1513 IADPDAETAEDLLIKKFMKQDLEKVLDSLSPREKQVVRWRFGLEDGRMKTLQEIGELMGV 1692
IADP+A T ED+LIK+FM+QDL+KVLDSL REKQV+RWRFG+EDGRMKTLQEIGE+MGV
Sbjct: 480 IADPEAVTPEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGV 539
Query: 1693 SRERIRQIESCAF 1731
SRER+RQIES AF
Sbjct: 540 SRERVRQIESSAF 552