BLASTX nr result
ID: Cocculus22_contig00006206
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00006206
(694 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAZ40333.1| hypothetical protein [Raphanus sativus] 120 6e-25
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 85 3e-14
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 84 3e-14
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 84 4e-14
gb|ABB47073.1| retrotransposon, putative, centromere-specific [O... 84 6e-14
gb|ABA97895.2| retrotransposon protein, putative, Ty3-gypsy subc... 84 6e-14
gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Ja... 84 6e-14
gb|AAM08860.1|AC113339_6 Putative retroelement [Oryza sativa Jap... 84 6e-14
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 83 8e-14
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 83 1e-13
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 83 1e-13
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group] 83 1e-13
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 82 1e-13
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group] 82 1e-13
ref|XP_004154771.1| PREDICTED: kanadaptin-like [Cucumis sativus] 82 2e-13
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 82 2e-13
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 82 2e-13
gb|AAX96752.1| retrotransposon protein, putative, Ty3-gypsy sub-... 82 2e-13
ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775... 82 2e-13
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc... 82 2e-13
>emb|CAZ40333.1| hypothetical protein [Raphanus sativus]
Length = 785
Score = 120 bits (300), Expect = 6e-25
Identities = 59/112 (52%), Positives = 74/112 (66%)
Frame = +3
Query: 3 HLVDVTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKIN 182
HL T KY AAD KR + FE GD VW LTK+R+P +YNKL ++K+GP E++E+IN
Sbjct: 676 HLESATTKYKLAADTKRCELIFEPGDLVWVYLTKERLPLRDYNKLKSKKLGPVEVVERIN 735
Query: 183 PNAYRLKLPSHIRTSDVFNVKHLIPYLGXXXXXXXXXXXXRANFSFAGGNDA 338
PN YR++LPSH+RTSDVFN+KHL P+ G AN S GG DA
Sbjct: 736 PNVYRVRLPSHLRTSDVFNIKHLSPFKGDNDDPDSW-----ANPSQPGGPDA 782
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 84.7 bits (208), Expect = 3e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
+Y A D+ R+HV F GD VW L KDR P +KL R GPF+++EKIN NAYRL+
Sbjct: 1522 RYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLE 1581
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1582 LPADFGVSPTFNIADLKPYLG 1602
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 84.3 bits (207), Expect = 3e-14
Identities = 41/81 (50%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A D+ R+HV F GD VW L KDR P +KL R GPF+++EKIN NAY+L+
Sbjct: 1507 KYKLARDKGRKHVVFAPGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLE 1566
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1567 LPADFGVSPTFNIADLKPYLG 1587
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 84.0 bits (206), Expect = 4e-14
Identities = 41/81 (50%), Positives = 50/81 (61%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
+Y A D+ R+HV F GD VW L KDR P +KL R GPF+++EKIN NAYRL+
Sbjct: 1519 RYKLAGDKGRKHVVFAPGDLVWLHLRKDRFPDLRKSKLMPRAGGPFKVLEKINDNAYRLE 1578
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP S FN+ L PYLG
Sbjct: 1579 LPXDFGVSPTFNIADLKPYLG 1599
>gb|ABB47073.1| retrotransposon, putative, centromere-specific [Oryza sativa
Japonica Group]
Length = 203
Score = 83.6 bits (205), Expect = 6e-14
Identities = 41/84 (48%), Positives = 51/84 (60%)
Frame = +3
Query: 15 VTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAY 194
+T KY A + R+ V+ E GD VW L KDR P +KL R GPF+I+EKIN NAY
Sbjct: 1 MTEKYRIAGSKGRQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAY 60
Query: 195 RLKLPSHIRTSDVFNVKHLIPYLG 266
+L+LP S FN+ L PYLG
Sbjct: 61 KLELPPEFGVSPTFNISDLKPYLG 84
>gb|ABA97895.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1108
Score = 83.6 bits (205), Expect = 6e-14
Identities = 40/81 (49%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A + ++HV FE GD VW L KDR P +KL AR GPF++++KIN NAY+L+
Sbjct: 925 KYKLAGSKGKKHVTFEPGDLVWLHLRKDRFPNLRKSKLLARADGPFKVLQKINDNAYKLE 984
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP S FN+ L PYLG
Sbjct: 985 LPVDFGVSPTFNIADLKPYLG 1005
>gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Japonica Group]
Length = 540
Score = 83.6 bits (205), Expect = 6e-14
Identities = 41/84 (48%), Positives = 51/84 (60%)
Frame = +3
Query: 15 VTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAY 194
+T KY A + R+ V+ E GD VW L KDR P +KL R GPF+I+EKIN NAY
Sbjct: 338 MTEKYRIAGSKGRQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAY 397
Query: 195 RLKLPSHIRTSDVFNVKHLIPYLG 266
+L+LP S FN+ L PYLG
Sbjct: 398 KLELPPEFGVSPTFNISDLKPYLG 421
>gb|AAM08860.1|AC113339_6 Putative retroelement [Oryza sativa Japonica Group]
Length = 411
Score = 83.6 bits (205), Expect = 6e-14
Identities = 41/84 (48%), Positives = 51/84 (60%)
Frame = +3
Query: 15 VTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAY 194
+T KY A + R+ V+ E GD VW L KDR P +KL R GPF+I+EKIN NAY
Sbjct: 209 MTEKYRIAGSKGRQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAY 268
Query: 195 RLKLPSHIRTSDVFNVKHLIPYLG 266
+L+LP S FN+ L PYLG
Sbjct: 269 KLELPPEFGVSPTFNISDLKPYLG 292
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 83.2 bits (204), Expect = 8e-14
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A + ++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+
Sbjct: 1387 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDNAYKLE 1446
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1447 LPADFGVSPTFNIADLKPYLG 1467
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 82.8 bits (203), Expect = 1e-13
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A + ++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+
Sbjct: 1491 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLE 1550
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1551 LPADFGVSPTFNIADLKPYLG 1571
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 82.8 bits (203), Expect = 1e-13
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A + ++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+
Sbjct: 1491 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLE 1550
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1551 LPADFGVSPTFNIADLKPYLG 1571
>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
Length = 1170
Score = 82.8 bits (203), Expect = 1e-13
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A + ++HV FE GD VW L KDR P +KL R GPF++++KIN NAY+L+
Sbjct: 979 KYKLAGSKGKKHVAFEPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLE 1038
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1039 LPADFGVSPTFNIADLKPYLG 1059
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 82.4 bits (202), Expect = 1e-13
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
+Y A+D+ R+ + FE GD VW L K+R P +KL R GPF+++EKIN NAYRL
Sbjct: 1466 RYKFASDKGRKEINFEPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLD 1525
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1526 LPADFGVSPTFNIADLKPYLG 1546
>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
Length = 2241
Score = 82.4 bits (202), Expect = 1e-13
Identities = 40/81 (49%), Positives = 50/81 (61%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A D+ RR + FE GD VW L K+R P +KL R GPF+++ KIN NAY++
Sbjct: 1412 KYKFAGDKGRRELNFEPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKID 1471
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ R S FNV L PYLG
Sbjct: 1472 LPADFRVSSTFNVADLKPYLG 1492
>ref|XP_004154771.1| PREDICTED: kanadaptin-like [Cucumis sativus]
Length = 962
Score = 82.0 bits (201), Expect = 2e-13
Identities = 41/86 (47%), Positives = 51/86 (59%)
Frame = +3
Query: 3 HLVDVTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKIN 182
HL + T+ Y AADRKRR F GD V L K R P YNKL R++GPF ++EKI
Sbjct: 321 HLKESTQSYKKAADRKRRQATFTEGDLVMIHLRKIRFPTGTYNKLKDRQLGPFRVLEKIG 380
Query: 183 PNAYRLKLPSHIRTSDVFNVKHLIPY 260
NAYR++LP + +FNV L Y
Sbjct: 381 DNAYRIELPLDLNVHPIFNVADLKQY 406
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 82.0 bits (201), Expect = 2e-13
Identities = 40/81 (49%), Positives = 50/81 (61%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A D+ RR + FE GD VW L K+R P +KL R GPF+++ KIN NAY++
Sbjct: 1573 KYKFAGDKGRRELNFEPGDMVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKID 1632
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ R S FNV L PYLG
Sbjct: 1633 LPADFRVSPTFNVADLKPYLG 1653
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 82.0 bits (201), Expect = 2e-13
Identities = 40/81 (49%), Positives = 50/81 (61%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A D+ RR + FE GD VW L K+R P +KL R GPF+++ KIN NAY++
Sbjct: 1582 KYKFAGDKGRRELNFEPGDMVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKID 1641
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ R S FNV L PYLG
Sbjct: 1642 LPADFRVSPTFNVADLKPYLG 1662
>gb|AAX96752.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1222
Score = 82.0 bits (201), Expect = 2e-13
Identities = 40/84 (47%), Positives = 51/84 (60%)
Frame = +3
Query: 15 VTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAY 194
+T KY A + ++ V+ E GD VW L KDR P +KL R GPF+I+EKIN NAY
Sbjct: 1020 MTEKYRIAGSKGKQEVKLEPGDLVWLHLRKDRFPELRKSKLMPRADGPFKIVEKINDNAY 1079
Query: 195 RLKLPSHIRTSDVFNVKHLIPYLG 266
+L+LP S FN+ L PYLG
Sbjct: 1080 KLELPPKFGVSPTFNISDLKPYLG 1103
>ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775623 [Setaria italica]
Length = 911
Score = 81.6 bits (200), Expect = 2e-13
Identities = 41/84 (48%), Positives = 50/84 (59%)
Frame = +3
Query: 15 VTRKYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAY 194
+ KY A + R+ V+ E GD VW L KDR P +KL R GPF+IIEKIN NAY
Sbjct: 654 MNEKYRIAGSKGRKEVKLEPGDLVWLHLRKDRFPDLRKSKLMPRADGPFKIIEKINDNAY 713
Query: 195 RLKLPSHIRTSDVFNVKHLIPYLG 266
+L+LP S FN+ L PYLG
Sbjct: 714 KLELPPEFGVSPTFNITDLKPYLG 737
>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1392
Score = 81.6 bits (200), Expect = 2e-13
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = +3
Query: 24 KYNAAADRKRRHVEFEVGDYVWAILTKDRVPAHEYNKLAARKVGPFEIIEKINPNAYRLK 203
KY A + ++HV FE GD VW L K+R P +KL R GPF++I+KIN NAY+L+
Sbjct: 1190 KYKLAGSKGKKHVTFEPGDLVWLHLRKNRFPNLRKSKLLPRADGPFKVIQKINDNAYKLE 1249
Query: 204 LPSHIRTSDVFNVKHLIPYLG 266
LP+ S FN+ L PYLG
Sbjct: 1250 LPADFGVSPTFNIADLKPYLG 1270