BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00006179
         (1150 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28253.3| unnamed protein product [Vitis vinifera]               72   3e-10
emb|CAN77039.1| hypothetical protein VITISV_036000 [Vitis vinifera]    67   2e-08
ref|XP_007013558.1| SPOC domain / Transcription elongation facto...    65   7e-08
ref|XP_007013557.1| SPOC domain / Transcription elongation facto...    65   7e-08

>emb|CBI28253.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score = 72.4 bits (176), Expect = 3e-10
 Identities = 75/270 (27%), Positives = 105/270 (38%), Gaps = 17/270 (6%)
 Frame = -2

Query: 1014 KPMP-EDDDLPEFDFRTACGDSHSPLSKS--VSXXXXXXXXXXXLGMKPSMPHIV---RQ 853
            +P+P +DDDLPEFDFRTACG S +P  KS                 M  S+P ++   + 
Sbjct: 257  QPLPTDDDDLPEFDFRTACGASQTPTGKSFDAMALERRLPPEGFRKMDVSVPLVIPNLQS 316

Query: 852  ATVTSLSKSEIPSFSNL-LNTSQGMPSQNKLGEDEHTRMVLPFSGAKPISTHSELSSHPS 676
              + +   SE  SF  L  +  QGMP    +   +    V P  G +  S     +  P+
Sbjct: 317  MPILNQKSSENLSFPRLQTDADQGMPLPKNVCHRDFQIPVQPILGER-YSVQGRATLSPA 375

Query: 675  VCKPASNSLLRLKNLWXXXXXDMPEWCPPDFGQRDQLPAVSTFRPLIPIAPSFLPNLTSE 496
                 ++S  R  +       DMPEW PP+  Q  + P   T +P     PS +PN   E
Sbjct: 376  NATTITSSKNRFDD--DDDDDDMPEWYPPNL-QVHKQPVAETTQPSTTAFPSMVPNSRFE 432

Query: 495  KRPHA-------PPIRTQTH-GFP--HGKQHYFVSIAMKPGQKQTNPTGEHVQFGPRXXX 346
              P +        PI   +H  FP     + +   IA      Q  P   ++Q GP    
Sbjct: 433  NLPPSLPRPTLFSPITASSHLPFPSLSHPRAFHGPIATTLNPAQLGPVNGYIQRGPNPMR 492

Query: 345  XXXXXXSFVPWRNIFDARVHTPGGWRGWRP 256
                     P  N        P   RGW+P
Sbjct: 493  GFNSSPVLRPPTNPHVKLPIHPTNKRGWKP 522


>emb|CAN77039.1| hypothetical protein VITISV_036000 [Vitis vinifera]
          Length = 751

 Score = 66.6 bits (161), Expect = 2e-08
 Identities = 68/236 (28%), Positives = 96/236 (40%), Gaps = 17/236 (7%)
 Frame = -2

Query: 1014 KPMP-EDDDLPEFDFRTACGDSHSPLSKS--VSXXXXXXXXXXXLGMKPSMPHIV---RQ 853
            +P+P +DDDLPEFDFRTACG S +P  KS                 M  S+P ++   + 
Sbjct: 297  QPLPTDDDDLPEFDFRTACGASQTPTGKSFDAMALERRLPPEGFRKMDVSVPLVIPNLQS 356

Query: 852  ATVTSLSKSEIPSFSNL-LNTSQGMPSQNKLGEDEHTRMVLPFSGAKPISTHSELSSHPS 676
              + +   SE  SF  L  +  QGMP    +   +    V P  G K  S     +  P+
Sbjct: 357  MPILNQKSSENLSFPRLQTDADQGMPLPKNVCHRDFQIPVQPILG-KRYSVQGRATLSPA 415

Query: 675  VCKPASNSLLRLKNLWXXXXXDMPEWCPPDFGQRDQLPAVSTFRPLIPIAPSFLPNLTSE 496
                 ++S  R  +       DMPEW PP+  Q  + P   T +      PS +PN   E
Sbjct: 416  NATTITSSKNRFDD--DDDDDDMPEWYPPNL-QVHKQPVAETTQXSTTAFPSMVPNSRFE 472

Query: 495  KRPHA-------PPIRTQTH-GFPHGK--QHYFVSIAMKPGQKQTNPTGEHVQFGP 358
              P +        PI   +H  FP     + +   IA      Q  P   ++Q GP
Sbjct: 473  NLPPSLPRPTLFXPITASSHLPFPSXSHPRAFHGPIATTLNPAQLGPVNGYIQRGP 528


>ref|XP_007013558.1| SPOC domain / Transcription elongation factor S-II protein, putative
            isoform 2 [Theobroma cacao] gi|508783921|gb|EOY31177.1|
            SPOC domain / Transcription elongation factor S-II
            protein, putative isoform 2 [Theobroma cacao]
          Length = 426

 Score = 64.7 bits (156), Expect = 7e-08
 Identities = 76/311 (24%), Positives = 116/311 (37%), Gaps = 19/311 (6%)
 Frame = -2

Query: 1140 KRCMQLEANTAPMDTSEQGKTAAXXXXXXXXXXXSHKLLKQNKPMPEDDDLPEFDFRTAC 961
            +R M L AN      SE GK  +              + K++ P  +DDDLPEFDF TAC
Sbjct: 143  EREMSLTAN------SESGKPKSSLGLQNPVLSLPSVITKEHIPAADDDDLPEFDFGTAC 196

Query: 960  GDSHSPLSKSVSXXXXXXXXXXXLGMKPSMPHIVRQATVTSLSKSE--------IPSFSN 805
              S +P +K V             G+K  +  +   +T+ SL  S         +P FS 
Sbjct: 197  DISQTPRNK-VLDNAEFHKNVLVEGLKKIVGSLPLTSTIQSLPSSNKRRAENFPLPEFS- 254

Query: 804  LLNTSQGMPSQNKLGEDEHTRMVLPFSGAKPISTHSELSSHPSVCKPASNSLLRLKNLWX 625
              +T   +P + K+ E + T ++       PI    + +   +   P   +++  +    
Sbjct: 255  -FDTILNLPPRKKVYEHDQTPVL-------PILEPKQTTKSRTTFTPIITTIVAPQKNIF 306

Query: 624  XXXXDMPEWCPPDFGQRDQLPAVSTFRPLIPIAPSFLPNLTSEKRPHAP----------- 478
                DMPEWCPP+     Q    S       I P+   +      P  P           
Sbjct: 307  DDDDDMPEWCPPNVELWKQTVLESAKVVTASIHPTLSNSELGSPSPGHPSPLSSSLAAQL 366

Query: 477  PIRTQTHGFPHGKQHYFVSIAMKPGQKQTNPTGEHVQFGPRXXXXXXXXXSFVPWRNIFD 298
            P+ TQ   +     H  ++ ++KP Q +   T  ++Q  P             P      
Sbjct: 367  PVSTQRSNY---ASHCPITASVKPAQPR--QTDRYIQKAPSSLTGSNSIPLLRP------ 415

Query: 297  ARVHTPGGWRG 265
              VH P GWRG
Sbjct: 416  -PVHPP-GWRG 424


>ref|XP_007013557.1| SPOC domain / Transcription elongation factor S-II protein, putative
            isoform 1 [Theobroma cacao] gi|508783920|gb|EOY31176.1|
            SPOC domain / Transcription elongation factor S-II
            protein, putative isoform 1 [Theobroma cacao]
          Length = 573

 Score = 64.7 bits (156), Expect = 7e-08
 Identities = 76/311 (24%), Positives = 116/311 (37%), Gaps = 19/311 (6%)
 Frame = -2

Query: 1140 KRCMQLEANTAPMDTSEQGKTAAXXXXXXXXXXXSHKLLKQNKPMPEDDDLPEFDFRTAC 961
            +R M L AN      SE GK  +              + K++ P  +DDDLPEFDF TAC
Sbjct: 290  EREMSLTAN------SESGKPKSSLGLQNPVLSLPSVITKEHIPAADDDDLPEFDFGTAC 343

Query: 960  GDSHSPLSKSVSXXXXXXXXXXXLGMKPSMPHIVRQATVTSLSKSE--------IPSFSN 805
              S +P +K V             G+K  +  +   +T+ SL  S         +P FS 
Sbjct: 344  DISQTPRNK-VLDNAEFHKNVLVEGLKKIVGSLPLTSTIQSLPSSNKRRAENFPLPEFS- 401

Query: 804  LLNTSQGMPSQNKLGEDEHTRMVLPFSGAKPISTHSELSSHPSVCKPASNSLLRLKNLWX 625
              +T   +P + K+ E + T ++       PI    + +   +   P   +++  +    
Sbjct: 402  -FDTILNLPPRKKVYEHDQTPVL-------PILEPKQTTKSRTTFTPIITTIVAPQKNIF 453

Query: 624  XXXXDMPEWCPPDFGQRDQLPAVSTFRPLIPIAPSFLPNLTSEKRPHAP----------- 478
                DMPEWCPP+     Q    S       I P+   +      P  P           
Sbjct: 454  DDDDDMPEWCPPNVELWKQTVLESAKVVTASIHPTLSNSELGSPSPGHPSPLSSSLAAQL 513

Query: 477  PIRTQTHGFPHGKQHYFVSIAMKPGQKQTNPTGEHVQFGPRXXXXXXXXXSFVPWRNIFD 298
            P+ TQ   +     H  ++ ++KP Q +   T  ++Q  P             P      
Sbjct: 514  PVSTQRSNY---ASHCPITASVKPAQPR--QTDRYIQKAPSSLTGSNSIPLLRP------ 562

Query: 297  ARVHTPGGWRG 265
              VH P GWRG
Sbjct: 563  -PVHPP-GWRG 571