BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00006161
         (1508 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28022.3| unnamed protein product [Vitis vinifera]              540   e-151
ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chlorop...   540   e-151
gb|EXB59798.1| CRS2-associated factor 1 [Morus notabilis]             536   e-150
ref|XP_007203785.1| hypothetical protein PRUPE_ppa001872mg [Prun...   533   e-149
ref|XP_006853609.1| hypothetical protein AMTR_s00056p00043140 [A...   533   e-149
ref|XP_004287455.1| PREDICTED: CRS2-associated factor 1, chlorop...   530   e-148
ref|XP_006389456.1| hypothetical protein POPTR_0024s00430g [Popu...   525   e-146
ref|XP_002535109.1| conserved hypothetical protein [Ricinus comm...   516   e-144
ref|XP_007013075.1| RNA-binding CRS1 / YhbY domain-containing pr...   513   e-143
ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chlorop...   505   e-140
ref|XP_006494323.1| PREDICTED: CRS2-associated factor 1, chlorop...   504   e-140
ref|XP_006451251.1| hypothetical protein CICLE_v100106541mg, par...   504   e-140
ref|XP_004239268.1| PREDICTED: CRS2-associated factor 1, chlorop...   502   e-139
ref|XP_006338151.1| PREDICTED: CRS2-associated factor 1, chlorop...   500   e-139
ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chlorop...   498   e-138
ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]...   491   e-136
ref|XP_004503464.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associa...   489   e-135
ref|XP_007160305.1| hypothetical protein PHAVU_002G310400g [Phas...   481   e-133
ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic prec...   473   e-130
ref|XP_004984210.1| PREDICTED: CRS2-associated factor 1, chlorop...   473   e-130

>emb|CBI28022.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  540 bits (1391), Expect = e-151
 Identities = 269/423 (63%), Positives = 307/423 (72%), Gaps = 10/423 (2%)
 Frame = +1

Query: 31   HPAFSRVTR--------VELDDATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALR 186
            HPAF +++R        +  +    + +GE GV Y +P  PFE +YSYTETPKVKP+ALR
Sbjct: 111  HPAFRQISRRTKLPGPNISPEAKRGISIGEDGVSYMVPGVPFELRYSYTETPKVKPIALR 170

Query: 187  EAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGP 366
            E P+ PFGP+TMPRPWTGRAP P SKKKL EFDSF+LPPP KK VKPVQAPGPFL G GP
Sbjct: 171  EPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLPPPGKKRVKPVQAPGPFLPGSGP 230

Query: 367  KYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 546
            +YV+SR+EILGEPLTEEE+K LVQGC++S+RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 231  RYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 290

Query: 547  KCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPV 726
            KCKG CTVDM+NV QQLEEKTGGK+IY                       LMLWKP+TPV
Sbjct: 291  KCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPV 350

Query: 727  YPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRINC 906
            YPRLVQ+ PEGLT+EEA  MRK+G KL PICKL KNGVY+DLV +VREAFEECELVRINC
Sbjct: 351  YPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECELVRINC 410

Query: 907  QGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFETES 1086
            QG+N SDYRKIGAKLKDLVPCVLISF HEHILMWRG DWK L PK E+G  E KE +  S
Sbjct: 411  QGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDGCKEAKESDNNS 470

Query: 1087 PTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSGNEH--SEETNDISDS 1260
              + PP F        QE  A C    S      +M + I S   NE    ++T D+S  
Sbjct: 471  EASIPPPF------EGQELSASCSSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSSK 524

Query: 1261 AKE 1269
              +
Sbjct: 525  GND 527


>ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
          Length = 752

 Score =  540 bits (1391), Expect = e-151
 Identities = 269/423 (63%), Positives = 307/423 (72%), Gaps = 10/423 (2%)
 Frame = +1

Query: 31   HPAFSRVTR--------VELDDATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALR 186
            HPAF +++R        +  +    + +GE GV Y +P  PFE +YSYTETPKVKP+ALR
Sbjct: 111  HPAFRQISRRTKLPGPNISPEAKRGISIGEDGVSYMVPGVPFELRYSYTETPKVKPIALR 170

Query: 187  EAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGP 366
            E P+ PFGP+TMPRPWTGRAP P SKKKL EFDSF+LPPP KK VKPVQAPGPFL G GP
Sbjct: 171  EPPFLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQLPPPGKKRVKPVQAPGPFLPGSGP 230

Query: 367  KYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 546
            +YV+SR+EILGEPLTEEE+K LVQGC++S+RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 231  RYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 290

Query: 547  KCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPV 726
            KCKG CTVDM+NV QQLEEKTGGK+IY                       LMLWKP+TPV
Sbjct: 291  KCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFLFRGRNYNYRNRPRFPLMLWKPVTPV 350

Query: 727  YPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRINC 906
            YPRLVQ+ PEGLT+EEA  MRK+G KL PICKL KNGVY+DLV +VREAFEECELVRINC
Sbjct: 351  YPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAKNGVYTDLVNNVREAFEECELVRINC 410

Query: 907  QGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFETES 1086
            QG+N SDYRKIGAKLKDLVPCVLISF HEHILMWRG DWK L PK E+G  E KE +  S
Sbjct: 411  QGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWRGSDWKFLHPKPEDGCKEAKESDNNS 470

Query: 1087 PTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSGNEH--SEETNDISDS 1260
              + PP F        QE  A C    S      +M + I S   NE    ++T D+S  
Sbjct: 471  EASIPPPF------EGQELSASCSSKISVKDTSLDMLDTIASPVINEDVAMDKTEDLSSK 524

Query: 1261 AKE 1269
              +
Sbjct: 525  GND 527


>gb|EXB59798.1| CRS2-associated factor 1 [Morus notabilis]
          Length = 792

 Score =  536 bits (1381), Expect = e-150
 Identities = 278/451 (61%), Positives = 319/451 (70%), Gaps = 16/451 (3%)
 Frame = +1

Query: 31   HPAFSRVTRV----------------ELDDATDVVLGESGVGYRIPNAPFEFQYSYTETP 162
            HPAF  + RV                +++   DV +GE GV Y I  APFEF+YSYTETP
Sbjct: 123  HPAFRPLRRVRKIAVKELSGLPKDKRDVERKADVRVGEDGVSYVIDGAPFEFKYSYTETP 182

Query: 163  KVKPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPG 342
            K +P+ LREAPY+PFGP TMPRPWTGRAP P SKKKL EFDSF+L PPHKKGVKPVQAPG
Sbjct: 183  KAQPVKLREAPYAPFGPTTMPRPWTGRAPLPPSKKKLKEFDSFRLSPPHKKGVKPVQAPG 242

Query: 343  PFLAGMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHW 522
            PFL G GPKYV SR+EILGEPLTEEE+K L++GC +++RQ+NMGRDGLTHNMLDNIHAHW
Sbjct: 243  PFLPGSGPKYVMSREEILGEPLTEEEIKDLIEGCRKTKRQMNMGRDGLTHNMLDNIHAHW 302

Query: 523  KRRRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLM 702
            KRRRVCKIKCKG CTVDM+NV +QLEE+TGGKIIY                       LM
Sbjct: 303  KRRRVCKIKCKGVCTVDMDNVKEQLEERTGGKIIYGKGGVIFLFRGRNYNYRTRPRFPLM 362

Query: 703  LWKPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEE 882
            LWKP+TPVYPRLV++ PEGLT+EEA+EMRK+GHKL PICKLGKNGVY +LVKHVREAFEE
Sbjct: 363  LWKPVTPVYPRLVKRVPEGLTLEEAKEMRKKGHKLMPICKLGKNGVYHNLVKHVREAFEE 422

Query: 883  CELVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSE 1062
            CELVRINCQGMNGSDYRKIGAKLKDLVPCVL+SFA EHIL+WRG DWKS  PK      E
Sbjct: 423  CELVRINCQGMNGSDYRKIGAKLKDLVPCVLLSFAFEHILIWRGCDWKSSLPKLVKDRDE 482

Query: 1063 VKEFETESPTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSGNEHSEET 1242
             KE + +  T+  PS          E   + + +GS   A  E   LI +TS    S E 
Sbjct: 483  AKESDVQIVTSVAPSV---------EGEEVAMSTGSVNDASLE---LISTTSTLNRSHEV 530

Query: 1243 NDISDSAKEDQTSNSSTLGVYASSSTGSVQS 1335
              I    +ED   +SS   V   S+TG V +
Sbjct: 531  --IGTEGRED---SSSVEYVEPCSTTGDVSN 556


>ref|XP_007203785.1| hypothetical protein PRUPE_ppa001872mg [Prunus persica]
            gi|462399316|gb|EMJ04984.1| hypothetical protein
            PRUPE_ppa001872mg [Prunus persica]
          Length = 750

 Score =  533 bits (1374), Expect = e-149
 Identities = 268/424 (63%), Positives = 306/424 (72%), Gaps = 14/424 (3%)
 Frame = +1

Query: 31   HPAFSRVTRVE------------LDDATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKP 174
            HPAF R+ R              +D   ++ +G+ G+ Y I  APFEF+YSYTETPKVKP
Sbjct: 120  HPAFRRIIRPTKLSKIPKDKGPTVDRKANISVGDDGLSYVIDGAPFEFKYSYTETPKVKP 179

Query: 175  LALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLA 354
            L LRE  Y+PFGP TM RPWTGRAP P SKKKL EFDSF+LPPPHKKGVKPVQ+PGP+L 
Sbjct: 180  LKLREPAYAPFGPTTMARPWTGRAPLPPSKKKLKEFDSFQLPPPHKKGVKPVQSPGPYLP 239

Query: 355  GMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRR 534
            G GPKYV+SRDEILG+PLT EEVK LV+GC+++RRQLNMGRDG THNMLDNIHAHWKRRR
Sbjct: 240  GSGPKYVKSRDEILGDPLTPEEVKELVKGCIKTRRQLNMGRDGFTHNMLDNIHAHWKRRR 299

Query: 535  VCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKP 714
            VCKIKCKG CTVDM+NVC+Q+EEKTGGKIIY                       LMLW+P
Sbjct: 300  VCKIKCKGVCTVDMDNVCEQIEEKTGGKIIYRKGGVIYLFRGRNYNYKTRPQFPLMLWRP 359

Query: 715  ITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELV 894
            ITPVYPRLVQ+ PEGLT+EEA EMRK+G  L PICKLGKNGVYS+L K+ REAFEECELV
Sbjct: 360  ITPVYPRLVQRAPEGLTLEEATEMRKKGRNLIPICKLGKNGVYSELAKNAREAFEECELV 419

Query: 895  RINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEF 1074
            RINC GMNGSDYRKIGAKLKDLVPCVLISF  EHILMWRGR+WKS  P  EN   EVK  
Sbjct: 420  RINCTGMNGSDYRKIGAKLKDLVPCVLISFELEHILMWRGREWKSSIPYPENDLKEVKGS 479

Query: 1075 ETESPTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSGNE--HSEETND 1248
            + +  T+  P       L  QE    C  + S   A  E+ N    + G+E   +EE+ D
Sbjct: 480  DVDDSTSIAP------PLEGQEESTSCASTVSVKDASLEILNTSTPSIGSEVVGAEESGD 533

Query: 1249 ISDS 1260
            +S S
Sbjct: 534  LSPS 537


>ref|XP_006853609.1| hypothetical protein AMTR_s00056p00043140 [Amborella trichopoda]
            gi|548857270|gb|ERN15076.1| hypothetical protein
            AMTR_s00056p00043140 [Amborella trichopoda]
          Length = 977

 Score =  533 bits (1373), Expect = e-149
 Identities = 272/461 (59%), Positives = 318/461 (68%), Gaps = 21/461 (4%)
 Frame = +1

Query: 1    KNSTNRHHHPHPAFSRV------------TRVELDDATDVVLGESGVGYRIPNAPFEFQY 144
            ++S+++    HPAF  +            +R      T   +GE GV Y++ NAPFEFQY
Sbjct: 262  RSSSSKKDPQHPAFRPIRAYKPLRSHGSFSRNSEKSETGFSVGEHGVSYKLVNAPFEFQY 321

Query: 145  SYTETPKVKPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVK 324
            SYTETPKVKPLALRE P+ PFGP TMPRPWTGRAP P SKKKLPEFDSFKLPPPHKKGVK
Sbjct: 322  SYTETPKVKPLALREPPFMPFGPSTMPRPWTGRAPLPPSKKKLPEFDSFKLPPPHKKGVK 381

Query: 325  PVQAPGPFLAGMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLD 504
            PVQAPGP+L G GP+YV+SR+EILGEPLT EEV  L++ CL+S+RQLNMGRDGLTHNMLD
Sbjct: 382  PVQAPGPYLPGTGPRYVKSREEILGEPLTTEEVNSLIRTCLKSKRQLNMGRDGLTHNMLD 441

Query: 505  NIHAHWKRRRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXX 684
            NIHAHWKR R CKIKCKG CTVDM+NVC+QLEEKTGGKIIY                   
Sbjct: 442  NIHAHWKRLRACKIKCKGVCTVDMDNVCEQLEEKTGGKIIYRRGGVLYLFRGRNYNYRLR 501

Query: 685  XXXXLMLWKPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHV 864
                LMLW+PITPVYPRL+   PEGLT+EEA+EMRK+G K+PPICKL KNGVY DLVK+V
Sbjct: 502  PRFPLMLWRPITPVYPRLIPLVPEGLTLEEAKEMRKKGRKVPPICKLAKNGVYVDLVKNV 561

Query: 865  REAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKS 1044
            +EAFEECELVRINCQG+N SDY+KIGAKLKD+VPCVLISF +EHILMWRGRDW S   K 
Sbjct: 562  KEAFEECELVRINCQGLNASDYKKIGAKLKDIVPCVLISFENEHILMWRGRDWTSSPSKL 621

Query: 1045 ENGFS--EVKEFETESPTADPPSF------ADSSSLRDQETPALCVQSGSGGVACAEMHN 1200
            EN     E+ E  +E+   DP           SS+L  ++      Q       C E +N
Sbjct: 622  ENDSETLEIAEVSSETGAPDPQILPISNPDTSSSALDTEKCSTTSSQPNQVDSNCIEPNN 681

Query: 1201 L-IISTSGNEHSEETNDISDSAKEDQTSNSSTLGVYASSST 1320
            + ++  S N  +EET        +D  + SS  G   S  T
Sbjct: 682  ISMLKVSNNMLTEETEVGPTPTFQDALAISSECGANCSEIT 722


>ref|XP_004287455.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Fragaria
            vesca subsp. vesca]
          Length = 804

 Score =  530 bits (1364), Expect = e-148
 Identities = 274/435 (62%), Positives = 316/435 (72%), Gaps = 15/435 (3%)
 Frame = +1

Query: 1    KNSTNRHHHP--HPAFSRVTRV-----------ELDDATDVVLGESGVGYRIPNAPFEFQ 141
            K S N + +P  HPAF RV +            E+D   ++ +G+ G+ Y I  APFEF+
Sbjct: 109  KYSENPNPNPSSHPAFRRVIKPTKLSSITREKPEVDRKANISIGDDGLSYVIDGAPFEFK 168

Query: 142  YSYTETPKVKPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGV 321
            YSYTETPK KP+ LRE PY+PFGP TM RPWTGRAP P SKKK+ EFDSF+LPPPHKKGV
Sbjct: 169  YSYTETPKQKPIKLREPPYAPFGPTTMGRPWTGRAPLPASKKKMKEFDSFQLPPPHKKGV 228

Query: 322  KPVQAPGPFLAGMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNML 501
            +PVQ+PGP+L G GPKYV+SR+EILG+PLT++EVK LV GC+++RRQLNMGRDGLTHNML
Sbjct: 229  RPVQSPGPYLPGSGPKYVKSREEILGDPLTDQEVKDLVNGCIKTRRQLNMGRDGLTHNML 288

Query: 502  DNIHAHWKRRRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXX 681
            DNIHAHWKRRRVCKIKCKG CTVDMENVCQQLEE+TGGKIIY                  
Sbjct: 289  DNIHAHWKRRRVCKIKCKGVCTVDMENVCQQLEERTGGKIIYRRGGVIFLFRGRNYNYKT 348

Query: 682  XXXXXLMLWKPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKH 861
                 LMLW+PITPVYPRL+Q+ PEGLT+EEA EMRK+G  L PI KLGKNGVYSDLV +
Sbjct: 349  RPRFPLMLWRPITPVYPRLIQRAPEGLTVEEATEMRKKGRDLIPIRKLGKNGVYSDLVDN 408

Query: 862  VREAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPK 1041
            VREAFEECELVRI+CQGMNGSDYRKIGAKLKDLVPCVLISF  E ILMWRGR+WKS    
Sbjct: 409  VREAFEECELVRIDCQGMNGSDYRKIGAKLKDLVPCVLISFERESILMWRGREWKSSLVN 468

Query: 1042 SENGFSEVKEFETESPTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSG 1221
             E+   EVK    ES   D PS A   SL  ++   +C  +GS   A  EM +  IS+S 
Sbjct: 469  PESNLKEVK----ESNVDDSPSIA--LSLEGEDASTVCAFTGSVKDANPEMIDTSISSSI 522

Query: 1222 NE--HSEETNDISDS 1260
             E   +E T D S S
Sbjct: 523  AEVVGAEGTEDPSPS 537


>ref|XP_006389456.1| hypothetical protein POPTR_0024s00430g [Populus trichocarpa]
            gi|550312256|gb|ERP48370.1| hypothetical protein
            POPTR_0024s00430g [Populus trichocarpa]
          Length = 731

 Score =  525 bits (1351), Expect = e-146
 Identities = 255/368 (69%), Positives = 285/368 (77%), Gaps = 10/368 (2%)
 Frame = +1

Query: 31   HPAF-SRVTRVEL---------DDATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLA 180
            HPAF  ++TRV L         D   D+ L E GV Y I  APFEF+YSYTETPKVKPL 
Sbjct: 113  HPAFLPKITRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTETPKVKPLK 172

Query: 181  LREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGM 360
            LREAPY+PFGP TMPRPWTGRAP P SKKKL EFDSF LPPP KKGVKPVQAPGPFL G 
Sbjct: 173  LREAPYAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFLPGA 232

Query: 361  GPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVC 540
            GP+Y ++R+EILG+PLT+EE++ LV GCL+++RQLNMGRDGLTHNMLDNIHAHWKRRRVC
Sbjct: 233  GPRYAKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVC 292

Query: 541  KIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPIT 720
            KIKCKG CTVDM+NVCQQLEE+TGGKIIY                       LMLWKP+T
Sbjct: 293  KIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWKPVT 352

Query: 721  PVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRI 900
            PVYPRL+Q+ PEGLT++EA  MR +G KL PICKLGKNGVY DLV++VREAFEECELVRI
Sbjct: 353  PVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECELVRI 412

Query: 901  NCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFET 1080
            NCQGMNGSD+RKIGAKL+DLVPCVLISF  EHILMWRGRDWKS F K  N   E K    
Sbjct: 413  NCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRDWKSSFTKPVNDGDEAKNSSI 472

Query: 1081 ESPTADPP 1104
            +  T+  P
Sbjct: 473  DGATSATP 480


>ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
            gi|223524018|gb|EEF27274.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 748

 Score =  516 bits (1330), Expect = e-144
 Identities = 260/458 (56%), Positives = 318/458 (69%), Gaps = 8/458 (1%)
 Frame = +1

Query: 31   HPAFSRVTRVE--------LDDATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALR 186
            HPAF  ++++         +D   DV L E G+ + +  APFEF+YSYTETPK KP+ LR
Sbjct: 119  HPAFRSISKITKKPLPEKPIDRNADVKLSEDGLSFVVDGAPFEFKYSYTETPKAKPIKLR 178

Query: 187  EAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGP 366
            EAP+SPFGP TM RPWTGRAP P SKKKL EFDSFKLPPP KKGVKPVQ PGPFL G GP
Sbjct: 179  EAPFSPFGPTTMGRPWTGRAPLPPSKKKLREFDSFKLPPPDKKGVKPVQKPGPFLPGAGP 238

Query: 367  KYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 546
            +YV SR+EILGEPLT EEVK+L++GCL++RRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 239  RYVYSREEILGEPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 298

Query: 547  KCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPV 726
            KC G CTVDM+NVCQQLEE+TGGK+IY                       LMLWKP+TPV
Sbjct: 299  KCMGVCTVDMDNVCQQLEERTGGKVIYRKGGVVYLFRGRNYNYRTRPRFPLMLWKPVTPV 358

Query: 727  YPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRINC 906
            YPRL+++ PEGLT+EEA EMR++G KL PICKL KNGVY +LVK VREAFEECELVRI+C
Sbjct: 359  YPRLIKRAPEGLTLEEASEMRRKGRKLIPICKLAKNGVYCNLVKEVREAFEECELVRIDC 418

Query: 907  QGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFETES 1086
            QG+NGSDYRK+GAKLK+LVPC+LISF HEHILMWRGRDWKS   K  N   E    +  S
Sbjct: 419  QGVNGSDYRKVGAKLKELVPCLLISFEHEHILMWRGRDWKSSMIKPVNDSVEAIGSDVNS 478

Query: 1087 PTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSGNEHSEETNDISDSAK 1266
             T      + +S L DQ    + + S   G++  +M  + + +           + + A+
Sbjct: 479  AT------SIASVLEDQ---IMEIVSHEDGLSKPDMSTIPVGS-----------MDEQAE 518

Query: 1267 EDQTSNSSTLGVYASSSTGSVQSSKPGSVNSLAFQVQE 1380
                 + +++ + ASS+T  +    P + +  +  V E
Sbjct: 519  HPSILDGTSVAIGASSTTVEMSEINPMTESGSSSAVSE 556


>ref|XP_007013075.1| RNA-binding CRS1 / YhbY domain-containing protein, putative
            [Theobroma cacao] gi|508783438|gb|EOY30694.1| RNA-binding
            CRS1 / YhbY domain-containing protein, putative
            [Theobroma cacao]
          Length = 767

 Score =  513 bits (1322), Expect = e-143
 Identities = 252/387 (65%), Positives = 293/387 (75%), Gaps = 8/387 (2%)
 Frame = +1

Query: 31   HPAFSRVTRVE-------LDDA-TDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALR 186
            HPAF + ++         LD    +V +G+ G+ + I  APFEF+YSYTETPKVKP+ LR
Sbjct: 117  HPAFRKFSKTANPPPPTPLDKKPANVSIGDDGISFVIDGAPFEFKYSYTETPKVKPIKLR 176

Query: 187  EAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGP 366
            E PYSPFGP TMPRPWTGRAP P SKKK+ EFDSF LPPP+KKGVKP+Q PGP+L G GP
Sbjct: 177  EPPYSPFGPSTMPRPWTGRAPLPPSKKKMKEFDSFVLPPPNKKGVKPIQKPGPYLPGTGP 236

Query: 367  KYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 546
            +YVQSR+EILGEPL  EEVK LV GCL+S+RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 237  RYVQSREEILGEPLNAEEVKELVNGCLKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 296

Query: 547  KCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPV 726
            KCKG CTVDM+NVC+QLEE+TGGK+IY                       LMLWKP+TP+
Sbjct: 297  KCKGVCTVDMDNVCEQLEERTGGKVIYRRGGVLFLFRGRNYNYKTRPRFPLMLWKPVTPM 356

Query: 727  YPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRINC 906
            YPRL+Q+ PEGLT+EE  EMRK+G KL PICKL KNGVYSDLVK+VREAFEECELVR+NC
Sbjct: 357  YPRLIQKAPEGLTVEEMSEMRKKGRKLMPICKLAKNGVYSDLVKNVREAFEECELVRVNC 416

Query: 907  QGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFETES 1086
            +G+ GSDYRKIGAKLK+LVPCVLISF +E ILMWRGR+WKS F K     S V+E + E+
Sbjct: 417  EGIKGSDYRKIGAKLKELVPCVLISFENESILMWRGRNWKSSFLKPAFN-SGVEERDAEN 475

Query: 1087 PTADPPSFADSSSLRDQETPALCVQSG 1167
             T      +    L  QE   +CVQ+G
Sbjct: 476  AT------SILGQLEGQELSPVCVQAG 496


>ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
            sativus] gi|449521361|ref|XP_004167698.1| PREDICTED:
            CRS2-associated factor 1, chloroplastic-like [Cucumis
            sativus]
          Length = 745

 Score =  505 bits (1301), Expect = e-140
 Identities = 249/366 (68%), Positives = 277/366 (75%)
 Frame = +1

Query: 79   DVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALREAPYSPFGPETMPRPWTGRAPHPT 258
            +V L E GV Y I  APFEF+YSYTETPKVKP+ LRE PY+PFGP TM RPWTGRAP P 
Sbjct: 144  NVSLSEDGVSYVIDGAPFEFKYSYTETPKVKPIKLRE-PYAPFGPTTMSRPWTGRAPLPP 202

Query: 259  SKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGPKYVQSRDEILGEPLTEEEVKVLVQ 438
            SKKKLPEFDSF+LPP +KKGVKPVQAPGPFLAG GPKYV SR+EILGEPLT+EE+K L++
Sbjct: 203  SKKKLPEFDSFQLPPKNKKGVKPVQAPGPFLAGSGPKYVMSREEILGEPLTKEEIKALIR 262

Query: 439  GCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKCKGACTVDMENVCQQLEEKTGGK 618
            GC+ S RQLN+GRDGLTHNML+NIHA WKRRRVCKIKCKG CTVDM+NV QQLEE+TGGK
Sbjct: 263  GCINSNRQLNIGRDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERTGGK 322

Query: 619  IIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPVYPRLVQQTPEGLTIEEAREMRKRG 798
            IIY                       LMLWKP  PVYPRLV+  P+GLT+EE  EMRK+G
Sbjct: 323  IIYSRGGALYLYRGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDGLTLEEVTEMRKKG 382

Query: 799  HKLPPICKLGKNGVYSDLVKHVREAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLI 978
             KL PICKLGKNGVYS LVKHVREAFEECELVRINCQG+NGSD+RKIGAKLKDLVPCVLI
Sbjct: 383  RKLIPICKLGKNGVYSALVKHVREAFEECELVRINCQGLNGSDFRKIGAKLKDLVPCVLI 442

Query: 979  SFAHEHILMWRGRDWKSLFPKSENGFSEVKEFETESPTADPPSFADSSSLRDQETPALCV 1158
            SF  EHIL+WRGRDWKS  P  E      K   T+  T   PS     S+++  T     
Sbjct: 443  SFESEHILLWRGRDWKSSLPYIERNPEGAKAHGTDETTIVAPSIEQDVSVKNTLTSLDSE 502

Query: 1159 QSGSGG 1176
               +GG
Sbjct: 503  DLSTGG 508


>ref|XP_006494323.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Citrus
            sinensis]
          Length = 837

 Score =  504 bits (1297), Expect = e-140
 Identities = 249/390 (63%), Positives = 285/390 (73%), Gaps = 10/390 (2%)
 Frame = +1

Query: 31   HPAFSRVTRVELD----------DATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLA 180
            HPAF ++++ E              +++ + E G+ Y I  APFEF+YSYTE PK KPL 
Sbjct: 123  HPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLK 182

Query: 181  LREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGM 360
            LREA +SPFGP TM RPWTGRAP P SKKKL EFDSF+LPPP+KKGVKPVQ PGP+L G 
Sbjct: 183  LREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGT 242

Query: 361  GPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVC 540
            GP+YV +R+EILGEPLT EEV+ LV+   RS RQLNMGRDGLTHNMLDNIHAHWKRRR C
Sbjct: 243  GPRYVSTREEILGEPLTAEEVRELVESVKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRAC 302

Query: 541  KIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPIT 720
            KIKCKG CTVDM+NVC+QLEE+TGGKIIY                       LMLWKPIT
Sbjct: 303  KIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRNRPHFPLMLWKPIT 362

Query: 721  PVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRI 900
            PVYPRL+QQ P+GLT+EEA EMRK+G KL PICKLGKNGVY DL K+VREAFE CELVRI
Sbjct: 363  PVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRI 422

Query: 901  NCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFET 1080
            NCQGMNGSDYRKIGAKL+DLVPCVLISF  EHILMWRG++WKS   K  N   + KE + 
Sbjct: 423  NCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKESKV 482

Query: 1081 ESPTADPPSFADSSSLRDQETPALCVQSGS 1170
            +   +  P  A + S     T  L V+ GS
Sbjct: 483  DGSISVAPPTAGNGS-APSHTQMLLVEGGS 511


>ref|XP_006451251.1| hypothetical protein CICLE_v100106541mg, partial [Citrus clementina]
            gi|557554477|gb|ESR64491.1| hypothetical protein
            CICLE_v100106541mg, partial [Citrus clementina]
          Length = 825

 Score =  504 bits (1297), Expect = e-140
 Identities = 249/390 (63%), Positives = 285/390 (73%), Gaps = 10/390 (2%)
 Frame = +1

Query: 31   HPAFSRVTRVELD----------DATDVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLA 180
            HPAF ++++ E              +++ + E G+ Y I  APFEF+YSYTE PK KPL 
Sbjct: 129  HPAFRKISKREKTTNKSPEKPAASKSNISITEDGLSYVIDGAPFEFKYSYTEAPKAKPLK 188

Query: 181  LREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGM 360
            LREA +SPFGP TM RPWTGRAP P SKKKL EFDSF+LPPP+KKGVKPVQ PGP+L G 
Sbjct: 189  LREAAFSPFGPTTMGRPWTGRAPLPPSKKKLKEFDSFQLPPPNKKGVKPVQKPGPYLPGT 248

Query: 361  GPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVC 540
            GP+YV +R+EILGEPLT EEV+ LV+   RS RQLNMGRDGLTHNMLDNIHAHWKRRR C
Sbjct: 249  GPRYVSTREEILGEPLTAEEVRELVESVKRSSRQLNMGRDGLTHNMLDNIHAHWKRRRAC 308

Query: 541  KIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPIT 720
            KIKCKG CTVDM+NVC+QLEE+TGGKIIY                       LMLWKPIT
Sbjct: 309  KIKCKGVCTVDMDNVCEQLEERTGGKIIYRRGGVLYLFRGRNYNYRNRPHFPLMLWKPIT 368

Query: 721  PVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRI 900
            PVYPRL+QQ P+GLT+EEA EMRK+G KL PICKLGKNGVY DL K+VREAFE CELVRI
Sbjct: 369  PVYPRLIQQVPDGLTLEEATEMRKKGRKLIPICKLGKNGVYCDLAKNVREAFEVCELVRI 428

Query: 901  NCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFET 1080
            NCQGMNGSDYRKIGAKL+DLVPCVLISF  EHILMWRG++WKS   K  N   + KE + 
Sbjct: 429  NCQGMNGSDYRKIGAKLRDLVPCVLISFEREHILMWRGQEWKSSILKPGNDSEDAKESKV 488

Query: 1081 ESPTADPPSFADSSSLRDQETPALCVQSGS 1170
            +   +  P  A + S     T  L V+ GS
Sbjct: 489  DGSISVAPPTAGNGS-APSHTQMLLVEGGS 517


>ref|XP_004239268.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Solanum
            lycopersicum]
          Length = 766

 Score =  502 bits (1292), Expect = e-139
 Identities = 260/446 (58%), Positives = 313/446 (70%), Gaps = 18/446 (4%)
 Frame = +1

Query: 1    KNSTNRHHHP---HPAFSRVTR-----VELDDAT------DVVLGESGVGYRIPNAPFEF 138
            K S N H++P   HPAF  + R     VE  D T      D+ + E+GV Y  P APF +
Sbjct: 103  KYSRNFHNNPRQIHPAFKPLVRTRKIPVETPDETAGKSDIDIKVDENGVCYEFPEAPFVY 162

Query: 139  QYSYTETPKVKPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKG 318
            QYSYTETPKVKP  LRE   SPFGPE+M RPWTGR P P SKKKLPEFDSF+LPPPHKKG
Sbjct: 163  QYSYTETPKVKPRKLREPLVSPFGPESMQRPWTGRKPLPPSKKKLPEFDSFQLPPPHKKG 222

Query: 319  VKPVQAPGPFLAGMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNM 498
            VKPVQAPGPFLAG GPKYV+SR+E+LGEPLT+EE+  L+  C ++ RQ+N+GRDGLTHNM
Sbjct: 223  VKPVQAPGPFLAGSGPKYVKSREEVLGEPLTKEEMMELINSCKKTTRQMNIGRDGLTHNM 282

Query: 499  LDNIHAHWKRRRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXX 678
            L+NIHAHWKR+RVCKIKCKG CTVDM+NVC++LEEKTGGKIIY                 
Sbjct: 283  LENIHAHWKRKRVCKIKCKGVCTVDMDNVCEKLEEKTGGKIIYHKGGVIYLFRGRNYNYM 342

Query: 679  XXXXXXLMLWKPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVK 858
                  LMLW+P+TPVYPRLV++ PEGLT+EEA EMRK+G  L PICKL KNGVY DLVK
Sbjct: 343  TRPRFPLMLWRPVTPVYPRLVRRVPEGLTLEEATEMRKKGRNLIPICKLAKNGVYCDLVK 402

Query: 859  HVREAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFP 1038
            +VREAFE CELV INCQG+N SDYRKIGAKLKDLVPCVLISF  EHIL+WRGRDW S  P
Sbjct: 403  NVREAFEACELVCINCQGLNPSDYRKIGAKLKDLVPCVLISFEQEHILIWRGRDWVSSLP 462

Query: 1039 KSENGFSEVKEFETESPTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTS 1218
            +  +   E++E  +ES  A       +++ R  E   +   +GS  +   E++   +S +
Sbjct: 463  EDGDN-PEIRE-GSESVNA-------ANTNRSFEVQVVASTAGSSSLPVTEVNTYNLSAN 513

Query: 1219 ----GNEHSEETNDISDSAKEDQTSN 1284
                G+E +E      D  KED++ +
Sbjct: 514  TFPLGDEDAEYVR--KDGTKEDRSED 537


>ref|XP_006338151.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Solanum
            tuberosum]
          Length = 764

 Score =  500 bits (1288), Expect = e-139
 Identities = 263/470 (55%), Positives = 310/470 (65%), Gaps = 22/470 (4%)
 Frame = +1

Query: 1    KNSTNRHHHPHPAFSRVTRV-----ELDDAT------DVVLGESGVGYRIPNAPFEFQYS 147
            +N  N     HPAF  + R      E  D T      D+ + E+GV Y  P APF +QYS
Sbjct: 106  RNFQNNPRQIHPAFKPLVRTRKIPDETADETARKSAIDIKVDENGVCYEFPEAPFVYQYS 165

Query: 148  YTETPKVKPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKP 327
            YTETPK+KP  LRE   SPFGPE+M RPWTGR P P SKKK PEFDSF+LPPPHKKGVKP
Sbjct: 166  YTETPKLKPKKLREPLVSPFGPESMQRPWTGRKPLPPSKKKRPEFDSFQLPPPHKKGVKP 225

Query: 328  VQAPGPFLAGMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDN 507
            VQAPGPFLAG GPKYV+SR+E+LGEPLT+EE+  L+  C ++ RQ+N+GRDGLTHNML+N
Sbjct: 226  VQAPGPFLAGSGPKYVKSREEVLGEPLTKEEMMELINSCKKTTRQMNIGRDGLTHNMLEN 285

Query: 508  IHAHWKRRRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXX 687
            IHAHWKR+RVCKIKCKG CTVDM+NVC++LEEKTGGKIIY                    
Sbjct: 286  IHAHWKRKRVCKIKCKGVCTVDMDNVCEKLEEKTGGKIIYHKGGLIYLFRGRNYNYKTRP 345

Query: 688  XXXLMLWKPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVR 867
               LMLW+P+TPVYPRLVQ+ PEGLT+EEA  MRK+G  L PICKL KNGVY DLVK+VR
Sbjct: 346  RFPLMLWRPVTPVYPRLVQRVPEGLTLEEATLMRKKGRNLIPICKLAKNGVYCDLVKNVR 405

Query: 868  EAFEECELVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSE 1047
            EAFE CELV INCQG+N SDYRKIGAKLKDLVPCVLISF  EHILMWRGRDW S  P+  
Sbjct: 406  EAFEACELVSINCQGLNPSDYRKIGAKLKDLVPCVLISFEQEHILMWRGRDWVSSLPEDR 465

Query: 1048 NGFSEVKEFETESPTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTS--- 1218
                            D  S   +++ R  E   +   SGS  +   EM+   +S +   
Sbjct: 466  ----------------DNDSDKAANTNRSLEVQVVASTSGSPRLPITEMNTCNLSANTFP 509

Query: 1219 -GNEHSEETNDISDSAKED-------QTSNSSTLGVYASSSTGSVQSSKP 1344
             G E SE      D  KED       ++SN + L V + ++TG  +S  P
Sbjct: 510  LGEEESEYVR--RDGTKEDRSEDHYLESSNKAPLDVCSVTTTGISESEIP 557


>ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine max]
          Length = 723

 Score =  498 bits (1281), Expect = e-138
 Identities = 235/367 (64%), Positives = 281/367 (76%), Gaps = 4/367 (1%)
 Frame = +1

Query: 13   NRHHHPHPAFSRVTRVELDDAT----DVVLGESGVGYRIPNAPFEFQYSYTETPKVKPLA 180
            +R  HP   FS + + +    +    +V + + G+ Y I  APFEF+YSYTETPKVKP+ 
Sbjct: 66   DRQSHPAFRFSNIPKSKPQRVSGAPENVKISDDGLSYVIDGAPFEFKYSYTETPKVKPIK 125

Query: 181  LREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGM 360
            +REAP+ PFGP+TMPRPWTGRAP P SKKKL EFDSF LPPPHKKGVKPVQ+PGP+LAG 
Sbjct: 126  MREAPFVPFGPDTMPRPWTGRAPLPASKKKLKEFDSFVLPPPHKKGVKPVQSPGPYLAGT 185

Query: 361  GPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVC 540
            GP+YV+SR+EILGEPLT+EE++ LV+ C++++RQLN+GRDGLTHNMLDNIHAHWKRRR C
Sbjct: 186  GPRYVKSREEILGEPLTQEEIRDLVKSCMKAQRQLNIGRDGLTHNMLDNIHAHWKRRRAC 245

Query: 541  KIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPIT 720
            KI+CKG CTVDM+NVC QLEE+TGGKII+                       LMLWKP+ 
Sbjct: 246  KIRCKGVCTVDMDNVCHQLEERTGGKIIHRKGGVLYLFRGRNYNYKTRPHFPLMLWKPVP 305

Query: 721  PVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRI 900
            PVYPRLVQ+ PEGLT+EEA +MR++G  L PICKLGKNGVY DLVK VREAFEECELVRI
Sbjct: 306  PVYPRLVQRVPEGLTLEEATKMRQKGSTLIPICKLGKNGVYCDLVKTVREAFEECELVRI 365

Query: 901  NCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFET 1080
            NCQG+N SDYRKIGAKL+DLVPC L+SF +EHILMWRG +WKS  P   +   E K+ E 
Sbjct: 366  NCQGLNKSDYRKIGAKLRDLVPCTLLSFEYEHILMWRGPNWKSSIPDRGDDRKESKQIEV 425

Query: 1081 ESPTADP 1101
            +     P
Sbjct: 426  DHKNYKP 432


>ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
            gi|355524767|gb|AET05221.1| CRS2-associated factor
            [Medicago truncatula]
          Length = 698

 Score =  491 bits (1263), Expect = e-136
 Identities = 254/472 (53%), Positives = 309/472 (65%), Gaps = 9/472 (1%)
 Frame = +1

Query: 1    KNSTNRHHHPHPAFSRVTRVELDDAT----DVVLGESGVGYRIPNAPFEFQYSYTETPKV 168
            K   +   HP   FS + + +L        +V + E GV Y I  APFEF+YSYTETPK 
Sbjct: 33   KPKVDPQSHPALKFSNIPKQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKS 92

Query: 169  KPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPF 348
            KP+ +RE P+ PFGP TMPRPWTGR P P SKKKL EFDSF LPPPHKKGVKPVQ+PGPF
Sbjct: 93   KPVQMREPPFVPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPF 152

Query: 349  LAGMGPKYVQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKR 528
            L G  P+YV SR+E+LGEPLT+EE+  LV+  L+S RQLN+GRDG  HNMLDNIHAHWKR
Sbjct: 153  LPGTSPRYVMSREEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKR 212

Query: 529  RRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLW 708
            RRVCKIKC G CTVDM+NVCQQLEEKTGGK+IY                       LMLW
Sbjct: 213  RRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIYRRGGVIYLFRGRNYNHKTRPRFPLMLW 272

Query: 709  KPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECE 888
            KP+ PVYPRL+QQ PEGLT+EEA EMR++G  L PICKLGKNGVY +LV +VREAFEECE
Sbjct: 273  KPVPPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECE 332

Query: 889  LVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVK 1068
            LVR+NCQG+N SDYRKIGAKL+DLVPC L+S+ +EHILMWRGR+WKS FP     F E  
Sbjct: 333  LVRVNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPDLVEDFKEAT 392

Query: 1069 EFETESPTADPPSFADSSSLRDQETPALCVQSGSGGVACAEMHNLIISTSGNEHSEETND 1248
            + +           AD+ + +  ++ AL V + S        HN +   S   H    + 
Sbjct: 393  KAD-----------ADNKNDKTLQSEALDVSTPSLN------HNPVEHVSNLSHDTSISF 435

Query: 1249 ISDSAKEDQ----TSNS-STLGVYASSSTGSVQSSKPGSVNSLAFQVQEKYS 1389
              D    D+    T NS  ++ V A +S   V  ++  +V + ++   E  S
Sbjct: 436  CPDDVTVDKVPCPTKNSKQSMSVVADASLTKVYEAETTNVATDSYGEPESCS 487


>ref|XP_004503464.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
            chloroplastic-like [Cicer arietinum]
          Length = 706

 Score =  489 bits (1259), Expect = e-135
 Identities = 253/456 (55%), Positives = 303/456 (66%), Gaps = 21/456 (4%)
 Frame = +1

Query: 25   HPHPAFSRV---TRVELDDATD-VVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALREA 192
            HP   FS +   T   +  A++ V + + G+ Y I  APFEF+YSYTETPK KPL LRE 
Sbjct: 50   HPALKFSNIPKQTSKPVSKASENVKISDDGLSYVIEGAPFEFKYSYTETPKAKPLKLREP 109

Query: 193  PYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGPKY 372
             + PFGP TMPRPWTGR P P SKKKL EFDSF LPPPHKKGVKPVQ+PGP+L G  PKY
Sbjct: 110  GFLPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPYLPGTSPKY 169

Query: 373  VQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKC 552
            V+SR+E+LGEPLT+EE+KVLVQ CL+S RQLNMGRDG THNMLDNIHAHWKRRRVCKIKC
Sbjct: 170  VRSREEVLGEPLTKEEIKVLVQSCLKSSRQLNMGRDGFTHNMLDNIHAHWKRRRVCKIKC 229

Query: 553  KGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPVYP 732
             G CTVDM+NVC QLEEKTGGK+IY                       LMLWKP+ PVYP
Sbjct: 230  LGVCTVDMDNVCHQLEEKTGGKVIYRRGGVLYLFRGRNYNYKTRPLFPLMLWKPVPPVYP 289

Query: 733  RLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRINCQG 912
            +L+Q+ PEGLT+EEA EMR++G  L PICK+GKNGVY +LVK+VREAFEECELVRINCQG
Sbjct: 290  KLIQRVPEGLTLEEATEMRQKGRTLTPICKIGKNGVYFNLVKNVREAFEECELVRINCQG 349

Query: 913  MNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFETESPT 1092
            +N SDYRKIGAKL+DLVPC L+S+ +EHILMWRGR+WK   P   +   E  + + ++  
Sbjct: 350  LNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKPSLPDLRDDRKEANKVDPDNKN 409

Query: 1093 --ADPPSFADSSSLRDQETPALCVQSGSGGVACA---------------EMHNLIISTSG 1221
              A P    D S+      PA  V + S   + +                  N   S S 
Sbjct: 410  YKALPSEALDVSAPNLHNNPAELVSNLSHDTSISFCLDDVTVDKVEVPCPTKNSKRSMSV 469

Query: 1222 NEHSEETNDISDSAKEDQTSNSSTLGVYASSSTGSV 1329
               +E TN  +DS  E +   S++ G   S   G +
Sbjct: 470  IADAEITNVATDSYGEPEPCRSTSPGTNISHDGGHI 505


>ref|XP_007160305.1| hypothetical protein PHAVU_002G310400g [Phaseolus vulgaris]
            gi|561033720|gb|ESW32299.1| hypothetical protein
            PHAVU_002G310400g [Phaseolus vulgaris]
          Length = 726

 Score =  481 bits (1238), Expect = e-133
 Identities = 231/367 (62%), Positives = 275/367 (74%), Gaps = 10/367 (2%)
 Frame = +1

Query: 25   HPHPAFSRVTRVE---LDDATD-VVLGESGVGYRIPNAPFEFQYSYTETPKVKPLALREA 192
            HP   FS + + +   +  A D V + + G+ Y I  APFEF+YSYTETPK KP+ +REA
Sbjct: 74   HPALRFSNIPKSKPRRITSAPDNVKISDDGLSYVIDGAPFEFKYSYTETPKAKPIKIREA 133

Query: 193  PYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMGPKY 372
            P+ PFGP TMPRPWTGRAP P SKKKL EFDSF+LPPPHKKGVKPVQ+PGP+L G GP+Y
Sbjct: 134  PFLPFGPATMPRPWTGRAPLPPSKKKLKEFDSFELPPPHKKGVKPVQSPGPYLRGTGPRY 193

Query: 373  VQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKIKC 552
            V+SR+EILGEPLT+EE++ LV  C++++RQLNMGRDG THNMLDNIHAHWKRRRVCKI+C
Sbjct: 194  VKSREEILGEPLTKEEIRELVNSCMKTQRQLNMGRDGFTHNMLDNIHAHWKRRRVCKIRC 253

Query: 553  KGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPITPVYP 732
             G CTVDM+NVCQQLEEKTGGK+I+                       LMLWKP++PVYP
Sbjct: 254  LGVCTVDMDNVCQQLEEKTGGKVIFRRGGKVYLFRGRNYNHKTRPRFPLMLWKPVSPVYP 313

Query: 733  RLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRINCQG 912
             L+ + P+GLT+EE  +MR++G  L PIC+LGKNGVY  LV  VREAFEEC+LVRINCQG
Sbjct: 314  SLIPRVPKGLTLEEVTKMREKGRTLIPICQLGKNGVYYYLVNTVREAFEECDLVRINCQG 373

Query: 913  MNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFP------KSENGFSEVKEF 1074
            +N SDYRKIGAKL+DLVPC LISF +EHILMWRG +WKS  P      K  N   + K F
Sbjct: 374  LNKSDYRKIGAKLRDLVPCTLISFQYEHILMWRGPNWKSSIPDLGDDLKEANKIVDDKHF 433

Query: 1075 ETESPTA 1095
            ET S  A
Sbjct: 434  ETRSSEA 440


>ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
            gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName:
            Full=CRS2-associated factor 1, chloroplastic; AltName:
            Full=Chloroplastic group IIA intron splicing facilitator
            CRS2-associated factor 1; Flags: Precursor
            gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea
            mays]
          Length = 674

 Score =  473 bits (1217), Expect = e-130
 Identities = 226/362 (62%), Positives = 269/362 (74%), Gaps = 10/362 (2%)
 Frame = +1

Query: 31   HPAFS-----RVTRVELDDATDVVLG----ESGVGYRIPNAPFEFQYSYTETPKVKPLAL 183
            HPAFS     R  ++ + D  +   G    + G+ YR+  APFEFQYSYTE P+ +P+AL
Sbjct: 50   HPAFSAAARGRAKKIPIADTDEPAAGVRVTDRGISYRLDGAPFEFQYSYTEAPRARPVAL 109

Query: 184  REAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPGPFLAGMG 363
            REAP+ PFGPE  PRPWTGR P P S+K+LPEFDSF LP P KKGVKPVQ+PGPFLAGM 
Sbjct: 110  REAPFMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPAPGKKGVKPVQSPGPFLAGME 169

Query: 364  PKYVQ-SRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAHWKRRRVC 540
            P+Y   SR++ILGEPLT+EEV  LV+G L+S+RQLNMGRDGLTHNML+NIH+HWKR+RVC
Sbjct: 170  PRYQSVSREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVC 229

Query: 541  KIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXLMLWKPIT 720
            KIKCKG CT+DM+N+C QLEEK GGK+I+                       LMLWKP+ 
Sbjct: 230  KIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVA 289

Query: 721  PVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFEECELVRI 900
            PVYPRLV + P GLT +EA EMR RGH+LPPICKLGKNGVY++LV  VREAFE C+LVR+
Sbjct: 290  PVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRV 349

Query: 901  NCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWKSLFPKSENGFSEVKEFET 1080
            +C G+N SD RKIGAKLKDLVPC+L+SF  EHILMWRG DWKS  P  EN +   K  E+
Sbjct: 350  DCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLENSYEVTKVQES 409

Query: 1081 ES 1086
             S
Sbjct: 410  FS 411


>ref|XP_004984210.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like isoform X2
            [Setaria italica]
          Length = 688

 Score =  473 bits (1216), Expect = e-130
 Identities = 231/367 (62%), Positives = 273/367 (74%), Gaps = 13/367 (3%)
 Frame = +1

Query: 16   RHHHP--HPAFS-----RVTRVELDDATDVVLG----ESGVGYRIPNAPFEFQYSYTETP 162
            R HH   HPAFS     R  ++ + D  +   G    + G+ YR+  APFEFQYSYTE P
Sbjct: 58   RRHHAASHPAFSAAARGRAKKIPVPDTEEPAAGVRVTDRGLSYRLDGAPFEFQYSYTEAP 117

Query: 163  KVKPLALREAPYSPFGPETMPRPWTGRAPHPTSKKKLPEFDSFKLPPPHKKGVKPVQAPG 342
            + +P+ALREAP+ PFGPE  PRPWTGR P P S+K+LPEFDSF LP P KKGVKPVQ+PG
Sbjct: 118  RARPVALREAPFLPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPQPGKKGVKPVQSPG 177

Query: 343  PFLAGMGPKY-VQSRDEILGEPLTEEEVKVLVQGCLRSRRQLNMGRDGLTHNMLDNIHAH 519
            PFLAGM P+Y   SR+E+LGEPLT+EEV  LV+G L++ RQLNMGRDGLTHNML+NIH+H
Sbjct: 178  PFLAGMEPRYQAASREEVLGEPLTKEEVAELVKGSLKTNRQLNMGRDGLTHNMLENIHSH 237

Query: 520  WKRRRVCKIKCKGACTVDMENVCQQLEEKTGGKIIYXXXXXXXXXXXXXXXXXXXXXXXL 699
            WKR+RVCKIKCKG CTVDM+NVCQQLEEK GGK+I+                       L
Sbjct: 238  WKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPSFPL 297

Query: 700  MLWKPITPVYPRLVQQTPEGLTIEEAREMRKRGHKLPPICKLGKNGVYSDLVKHVREAFE 879
            MLWKP+ PVYPRLV++ P+GLT +EA EMR RG++LPPIC+LGKNGVY +LVK VREAFE
Sbjct: 298  MLWKPVAPVYPRLVKKVPDGLTPDEAAEMRMRGNQLPPICRLGKNGVYVNLVKQVREAFE 357

Query: 880  ECELVRINCQGMNGSDYRKIGAKLKDLVPCVLISFAHEHILMWRGRDWK-SLFPKSENGF 1056
             C+LVR++C G+N SD RKIGAKLKDLVPC+L+SF  EHILMWRG DWK SL P  EN F
Sbjct: 358  ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPLEENNF 417

Query: 1057 SEVKEFE 1077
               K  E
Sbjct: 418  EVTKADE 424