BLASTX nr result
ID: Cocculus22_contig00005819
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus22_contig00005819
(769 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006428010.1| hypothetical protein CICLE_v10026735mg [Citr... 264 3e-68
ref|XP_002307132.1| hypothetical protein POPTR_0005s08690g [Popu... 263 5e-68
ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II su... 262 1e-67
ref|XP_007048135.1| RNA polymerase II, Rpb4, core protein isofor... 261 1e-67
ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II su... 259 7e-67
ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ri... 259 7e-67
ref|XP_006579388.1| PREDICTED: uncharacterized protein LOC100527... 259 1e-66
ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycin... 258 1e-66
ref|XP_007134240.1| hypothetical protein PHAVU_010G030200g [Phas... 258 2e-66
gb|AFK35928.1| unknown [Lotus japonicus] 258 2e-66
ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycin... 257 3e-66
ref|XP_007206127.1| hypothetical protein PRUPE_ppa013142mg [Prun... 256 8e-66
ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Caps... 255 1e-65
ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II su... 255 1e-65
ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 ... 254 2e-65
gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [A... 254 2e-65
ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycin... 253 7e-65
ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidop... 252 9e-65
ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata] g... 252 9e-65
ref|XP_006361114.1| PREDICTED: DNA-directed RNA polymerase II su... 250 3e-64
>ref|XP_006428010.1| hypothetical protein CICLE_v10026735mg [Citrus clementina]
gi|568884040|ref|XP_006494738.1| PREDICTED: DNA-directed
RNA polymerase II subunit 4-like isoform X2 [Citrus
sinensis] gi|557530000|gb|ESR41250.1| hypothetical
protein CICLE_v10026735mg [Citrus clementina]
Length = 138
Score = 264 bits (674), Expect = 3e-68
Identities = 132/138 (95%), Positives = 136/138 (98%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEVA+ILD KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|XP_002307132.1| hypothetical protein POPTR_0005s08690g [Populus trichocarpa]
gi|224096326|ref|XP_002310604.1| hypothetical protein
POPTR_0007s06660g [Populus trichocarpa]
gi|222853507|gb|EEE91054.1| hypothetical protein
POPTR_0007s06660g [Populus trichocarpa]
gi|222856581|gb|EEE94128.1| hypothetical protein
POPTR_0005s08690g [Populus trichocarpa]
Length = 138
Score = 263 bits (672), Expect = 5e-68
Identities = 131/138 (94%), Positives = 137/138 (99%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGD+FLKAKCLMNCEVALIL+ KYEQLQQMSDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDDFLKAKCLMNCEVALILEHKYEQLQQMSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|XP_002282413.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4 [Vitis
vinifera] gi|147856183|emb|CAN80281.1| hypothetical
protein VITISV_017448 [Vitis vinifera]
gi|302143481|emb|CBI22042.3| unnamed protein product
[Vitis vinifera]
Length = 138
Score = 262 bits (669), Expect = 1e-67
Identities = 130/138 (94%), Positives = 137/138 (99%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEVA+IL+ KYEQLQQMSDDP+NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVAVILEHKYEQLQQMSDDPLNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|XP_007048135.1| RNA polymerase II, Rpb4, core protein isoform 1 [Theobroma cacao]
gi|590707933|ref|XP_007048136.1| RNA polymerase II,
Rpb4, core protein isoform 1 [Theobroma cacao]
gi|508700396|gb|EOX92292.1| RNA polymerase II, Rpb4,
core protein isoform 1 [Theobroma cacao]
gi|508700397|gb|EOX92293.1| RNA polymerase II, Rpb4,
core protein isoform 1 [Theobroma cacao]
Length = 138
Score = 261 bits (668), Expect = 1e-67
Identities = 130/138 (94%), Positives = 137/138 (99%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIG+EFLKAKCLMNCEVALIL+ KYEQLQQMS+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGEEFLKAKCLMNCEVALILEHKYEQLQQMSEDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
DDAIE+ML+DLSLIKKFE
Sbjct: 121 DDAIERMLNDLSLIKKFE 138
>ref|XP_004509486.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like [Cicer
arietinum] gi|502155876|ref|XP_004510223.1| PREDICTED:
DNA-directed RNA polymerase II subunit RPB4-like [Cicer
arietinum]
Length = 138
Score = 259 bits (662), Expect = 7e-67
Identities = 130/138 (94%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILD KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|XP_002522014.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223538818|gb|EEF40418.1| DNA-directed RNA polymerase
II, putative [Ricinus communis]
Length = 138
Score = 259 bits (662), Expect = 7e-67
Identities = 129/138 (93%), Positives = 136/138 (98%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENA+ELKIGDEFLKAKCLMNCEVALIL+ KYEQLQQMS+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENASELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSNDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIK++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML DLS+IKKFE
Sbjct: 121 DEAIEKMLTDLSMIKKFE 138
>ref|XP_006579388.1| PREDICTED: uncharacterized protein LOC100527704 isoform X1 [Glycine
max]
Length = 138
Score = 259 bits (661), Expect = 1e-66
Identities = 130/138 (94%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEVALIL+ KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RY+LAEFELCVLGNLCPETVEEAIAMVPSIKSRGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|NP_001237937.1| uncharacterized protein LOC100499661 [Glycine max]
gi|255625623|gb|ACU13156.1| unknown [Glycine max]
Length = 138
Score = 258 bits (660), Expect = 1e-66
Identities = 129/138 (93%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQ+SQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQISQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|XP_007134240.1| hypothetical protein PHAVU_010G030200g [Phaseolus vulgaris]
gi|561007285|gb|ESW06234.1| hypothetical protein
PHAVU_010G030200g [Phaseolus vulgaris]
Length = 138
Score = 258 bits (658), Expect = 2e-66
Identities = 129/138 (93%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gb|AFK35928.1| unknown [Lotus japonicus]
Length = 138
Score = 258 bits (658), Expect = 2e-66
Identities = 129/138 (93%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|NP_001238073.1| uncharacterized protein LOC100527316 [Glycine max]
gi|255632071|gb|ACU16388.1| unknown [Glycine max]
Length = 138
Score = 257 bits (657), Expect = 3e-66
Identities = 129/138 (93%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIA+VPSIKSRGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAVVPSIKSRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>ref|XP_007206127.1| hypothetical protein PRUPE_ppa013142mg [Prunus persica]
gi|462401769|gb|EMJ07326.1| hypothetical protein
PRUPE_ppa013142mg [Prunus persica]
Length = 138
Score = 256 bits (653), Expect = 8e-66
Identities = 126/138 (91%), Positives = 134/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEVALIL+ KY+QLQQMSDDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYDQLQQMSDDPRNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAV+QVREILSRYQL EFELCVLGNLCPETVEEAIAMVPSIK++GR HD
Sbjct: 61 YVKRFSRYKNPDAVKQVREILSRYQLTEFELCVLGNLCPETVEEAIAMVPSIKAKGRVHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
DDAI+KML+DL+LIKKFE
Sbjct: 121 DDAIDKMLNDLALIKKFE 138
>ref|XP_006288864.1| hypothetical protein CARUB_v10002229mg [Capsella rubella]
gi|482557570|gb|EOA21762.1| hypothetical protein
CARUB_v10002229mg [Capsella rubella]
Length = 138
Score = 255 bits (652), Expect = 1e-65
Identities = 124/138 (89%), Positives = 136/138 (98%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ+S+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQVSEDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPS+K++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
DDAIEKML+DLSL+K+FE
Sbjct: 121 DDAIEKMLNDLSLVKRFE 138
>ref|XP_004138390.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB4-like
[Cucumis sativus] gi|449526195|ref|XP_004170099.1|
PREDICTED: DNA-directed RNA polymerase II subunit
RPB4-like [Cucumis sativus]
Length = 138
Score = 255 bits (652), Expect = 1e-65
Identities = 125/138 (90%), Positives = 135/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQMS+DP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQMSEDPTNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVRE+LSRYQLAEFELCVLGNLCPETVEEAIAMVPS+K++GR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVREVLSRYQLAEFELCVLGNLCPETVEEAIAMVPSLKTKGRVHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIK+FE
Sbjct: 121 DEAIEKMLNDLSLIKRFE 138
>ref|XP_003626907.1| DNA-directed RNA polymerase II subunit RPB4 [Medicago truncatula]
gi|355520929|gb|AET01383.1| DNA-directed RNA polymerase
II subunit RPB4 [Medicago truncatula]
gi|388497296|gb|AFK36714.1| unknown [Medicago
truncatula]
Length = 138
Score = 254 bits (650), Expect = 2e-65
Identities = 128/138 (92%), Positives = 134/138 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ KYEQLQQ SDD MNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKYEQLQQSSDDAMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RYQLAEFELCVLGNLCPETVEEAIAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAQD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSLIKKFE
Sbjct: 121 DEAIEKMLNDLSLIKKFE 138
>gb|ABQ32301.1| putative 15.9 kDa subunit of RNA polymerase II [Artemisia annua]
Length = 138
Score = 254 bits (649), Expect = 2e-65
Identities = 127/138 (92%), Positives = 133/138 (96%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LILD K EQLQ MSDDP NQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILDHKLEQLQAMSDDPSNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVRE+LSR+QLAEFELCVLGNLCPETVEEAIAMVPSIKSRGR HD
Sbjct: 61 YVKRFSRYKNPDAVRQVRELLSRHQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRGHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+D+SLIKKFE
Sbjct: 121 DEAIEKMLNDMSLIKKFE 138
>ref|NP_001236224.1| uncharacterized protein LOC100527704 [Glycine max]
gi|255632992|gb|ACU16850.1| unknown [Glycine max]
Length = 195
Score = 253 bits (645), Expect = 7e-65
Identities = 127/135 (94%), Positives = 132/135 (97%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEVALIL+ KYEQLQQ SDDPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQTSDDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREIL+RY+LAEFELCVLGNLCPETVEEAIAMVPSIKSRGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQVREILARYELAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAQD 120
Query: 464 DDAIEKMLHDLSLIK 508
D+AIEKML+DLSLIK
Sbjct: 121 DEAIEKMLNDLSLIK 135
>ref|NP_196554.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|75098524|sp|O48890.1|NRPB4_ARATH RecName:
Full=DNA-directed RNA polymerase II subunit 4; AltName:
Full=15.9 kDa subunit of RNA polymerase II; AltName:
Full=DNA-directed RNA polymerase II subunit D
gi|2760362|gb|AAB95261.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|9758970|dbj|BAB09413.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|21554212|gb|AAM63291.1| 15.9 kDa subunit of RNA
polymerase II [Arabidopsis thaliana]
gi|98960869|gb|ABF58918.1| At5g09920 [Arabidopsis
thaliana] gi|222423668|dbj|BAH19801.1| AT5G09920
[Arabidopsis thaliana] gi|332004084|gb|AED91467.1| RNA
polymerase II, Rpb4, core protein [Arabidopsis thaliana]
Length = 138
Score = 252 bits (644), Expect = 9e-65
Identities = 122/138 (88%), Positives = 136/138 (98%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ K+EQLQQ+S+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPS+K++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
>ref|XP_002871392.1| RPB15.9 [Arabidopsis lyrata subsp. lyrata]
gi|297317229|gb|EFH47651.1| RPB15.9 [Arabidopsis lyrata
subsp. lyrata]
Length = 138
Score = 252 bits (644), Expect = 9e-65
Identities = 122/138 (88%), Positives = 136/138 (98%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEV+LIL+ K+EQLQQ+S+DPMNQVSQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVSLILEHKFEQLQQVSEDPMNQVSQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQVREILSR+QL EFELCVLGNLCPETVEEA+AMVPS+K++GRAHD
Sbjct: 61 YVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRAHD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
D+AIEKML+DLSL+K+FE
Sbjct: 121 DEAIEKMLNDLSLVKRFE 138
>ref|XP_006361114.1| PREDICTED: DNA-directed RNA polymerase II subunit 4-like [Solanum
tuberosum]
Length = 138
Score = 250 bits (639), Expect = 3e-64
Identities = 126/138 (91%), Positives = 131/138 (94%)
Frame = +2
Query: 104 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILDRKYEQLQQMSDDPMNQVSQVFEKSLQ 283
MSGEEEENAAELKIGDEFLKAKCLMNCEVALIL+ KYEQLQQMSDDP NQ+SQVFEKSLQ
Sbjct: 1 MSGEEEENAAELKIGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPTNQISQVFEKSLQ 60
Query: 284 YVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKSRGRAHD 463
YVKRFSRYKNPDAVRQ REILSRY LAEFELCVLGNLCPETVEE IAMVPSIK+RGRA D
Sbjct: 61 YVKRFSRYKNPDAVRQAREILSRYPLAEFELCVLGNLCPETVEEGIAMVPSIKNRGRALD 120
Query: 464 DDAIEKMLHDLSLIKKFE 517
++AIEKML DLSLIKKFE
Sbjct: 121 EEAIEKMLTDLSLIKKFE 138