BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus22_contig00005795
         (1723 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32760.3| unnamed protein product [Vitis vinifera]              508   e-141
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   507   e-141
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   503   e-140
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   491   e-136
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   491   e-136
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   490   e-136
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   478   e-132
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   477   e-132
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   476   e-131
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   475   e-131
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   471   e-130
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   469   e-129
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   455   e-125
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   448   e-123
ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF,...   441   e-121
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   441   e-121
ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutr...   438   e-120
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     437   e-120
ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phas...   437   e-120
ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis ...   436   e-119

>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  508 bits (1307), Expect = e-141
 Identities = 287/538 (53%), Positives = 359/538 (66%), Gaps = 7/538 (1%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 309
            ME+G  +L S   FP +   RNS+  SV MLH+Q   +     TT     FP S LLQEQ
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSS-SVLMLHDQVAPAVASIPTTIAR-KFPTSVLLQEQ 58

Query: 310  HVEFRPL-LLMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSL 486
              E+RP    + D++  +  L++R+ +             + YM +FE+QLL    L   
Sbjct: 59   RDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYS 118

Query: 487  FPSLCTREKL-VSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 663
             PS  T EK   SS+IM+SI  D ++  +V+P DV                   +  VS+
Sbjct: 119  LPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSA--------SKQAVSL 170

Query: 664  ADSEKFLEEFLRGSGSTSLAI----EVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDA 831
             ++ K L   L  S S SL       +PLE++  V+S             PK    VH+ 
Sbjct: 171  YENAKLLGADLEDSPSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPKVA--VHEN 227

Query: 832  PSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRL 1011
               R+A +Q KINEG+DP DPLRLFL G ETR+LLTAKEE EL VQI+ L +LEEVK RL
Sbjct: 228  HGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRL 287

Query: 1012 QSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNL 1191
            QS   REPT+VEWAEA G+SC +LQS LH G RSR+K+  AN R+VVH+AKQYQG+GLNL
Sbjct: 288  QSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNL 347

Query: 1192 QDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1371
            QDL+QEGSMGLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLPEN+YSLL 
Sbjct: 348  QDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLG 407

Query: 1372 QVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQE 1548
            +VK AK L IQEGHH PT EE+A+RVGIT EKL+ LL  TR+PLSMQQPVWAD +TTFQE
Sbjct: 408  KVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQE 467

Query: 1549 ITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            +TADTGIEIP++ V K+ MR+H+ NLL VL PKERRIIRLR+GI DG P++LS+IG V
Sbjct: 468  VTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLV 525


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
            gi|462400636|gb|EMJ06193.1| hypothetical protein
            PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  507 bits (1306), Expect = e-141
 Identities = 282/541 (52%), Positives = 358/541 (66%), Gaps = 10/541 (1%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTP-----LSVTMLHEQTISSAKPFSTTSTTWHFPASA 294
            ME+GR+ L S S FP    LR+  P      SV MLHEQ + +      TS   HFP S 
Sbjct: 1    MEAGRHFLSSSSAFPSTTHLRHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSV 60

Query: 295  LLQEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYAS 471
            LLQEQ  EF+PLL ++ +DK  E  LDR + + GA             + +  +  L   
Sbjct: 61   LLQEQRDEFKPLLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNH 120

Query: 472  DLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEES 651
            D+  +F SL T  K  +   ++S+   ++   +VEP +V                  E+S
Sbjct: 121  DILDVFSSLQTGAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDS 180

Query: 652  NVSIADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXX---PKAKAIV 822
                AD +          G TSLA  + +E+E  V+S                PK+K I 
Sbjct: 181  QSMGADFDDL--------GYTSLANWI-VEEEKTVRSTRILERRRKRIKTRKVPKSKVIG 231

Query: 823  HDAPSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVK 1002
            H++ S   ++++ KI+EGF+PNDPLRLFL G ETRQLLTAKEE EL  +++ L KLEEVK
Sbjct: 232  HESNSFTGSDVRKKISEGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVK 291

Query: 1003 VRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKG 1182
             RLQ+QF REPTL+EWAEA G+SC IL+S L  G  SREK+  AN R+VVH+AKQYQG+G
Sbjct: 292  SRLQTQFGREPTLIEWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRG 351

Query: 1183 LNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYS 1362
            L LQDLMQEGSMGLMKS+EKFKPQAGCRF+TY+YWWIRQ++RKAIFQ+SRTIRLPENVYS
Sbjct: 352  LGLQDLMQEGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYS 411

Query: 1363 LLRQVKNAKNLCIQEG-HHPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTT 1539
            LL +V  AK  CIQEG H+P  EELA+RVGIT EKLE LLY+TR+PLSMQQPVWAD +TT
Sbjct: 412  LLGKVLEAKKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTT 471

Query: 1540 FQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGS 1719
            FQE+TADTG+EIP++ V K+ MR+H+ +LL +L  +ER IIRLRYGIEDG+ +SLS+IG 
Sbjct: 472  FQEVTADTGVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGG 531

Query: 1720 V 1722
            +
Sbjct: 532  M 532


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  503 bits (1296), Expect = e-140
 Identities = 287/548 (52%), Positives = 359/548 (65%), Gaps = 17/548 (3%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTP----------LSVTMLHEQTISSAKPFSTTSTTWH 279
            ME+G  +L S   FP +   RNS+           L V MLH+Q   +     TT     
Sbjct: 1    MEAGTNILSSTPSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPTTIAR-K 59

Query: 280  FPASALLQEQHVEFRPL-LLMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQ 456
            FP S LLQEQ  E+RP    + D++  +  L++R+ +             + YM +FE+Q
Sbjct: 60   FPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQ 119

Query: 457  LLYASDLRSLFPSLCTREKL-VSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXX 633
            LL    L    PS  T EK   SS+IM+SI  D ++  +V+P DV               
Sbjct: 120  LLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSA----- 174

Query: 634  XXXEESNVSIADSEKFLEEFLRGSGSTSLAI----EVPLEKEIKVKSNXXXXXXXXXXXX 801
                +  VS+ ++ K L   L  S S SL       +PLE++  V+S             
Sbjct: 175  ---SKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRN 230

Query: 802  PKAKAIVHDAPSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKAL 981
            PK    VH+    R+A +Q KINEG+DP DPLRLFL G ETR+LLTAKEE EL VQI+ L
Sbjct: 231  PKVA--VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQEL 288

Query: 982  TKLEEVKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVA 1161
             +LEEVK RLQS   REPT+VEWAEA G+SC +LQS LH G RSR+K+  AN R+VVH+A
Sbjct: 289  MRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIA 348

Query: 1162 KQYQGKGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIR 1341
            KQYQG+GLNLQDL+QEGSMGLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIR
Sbjct: 349  KQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIR 408

Query: 1342 LPENVYSLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPV 1518
            LPEN+YSLL +VK AK L IQEGHH PT EE+A+RVGIT EKL+ LL  TR+PLSMQQPV
Sbjct: 409  LPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPV 468

Query: 1519 WADSNTTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPK 1698
            WAD +TTFQE+TADTGIEIP++ V K+ MR+H+ NLL VL PKERRIIRLR+GI DG P+
Sbjct: 469  WADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPR 528

Query: 1699 SLSQIGSV 1722
            +LS+IG V
Sbjct: 529  TLSEIGLV 536


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Citrus sinensis]
          Length = 569

 Score =  491 bits (1265), Expect = e-136
 Identities = 274/543 (50%), Positives = 358/543 (65%), Gaps = 12/543 (2%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNS--------TPLSVTMLHEQTISSAKPFSTTSTTWHFP 285
            ME+GR LL SP  FP + ++++S        +  SV M +EQ+  +     T+S   HFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 286  ASALLQEQHVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQL 459
             S LLQEQ  E+RPLL M  +DK  +   D R  +  A           D  ++  E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 460  LYASDLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXX 639
            L+  DL +L P +   E    S  MQS++ DT+   + EP+D                  
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA------- 173

Query: 640  XEESNVSIADSEKFL-EEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKA 816
              +   S+A++ K    EF   S ++SL    PLE+   V+S              K K 
Sbjct: 174  -SKEAASLAENPKLNGAEFTDISLTSSLGY--PLEEVKTVRSTQFLERRSKKRKVSKPKV 230

Query: 817  IVHDAPSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEE 996
              H+  + RKA+++ K++EGFD NDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+
Sbjct: 231  TNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290

Query: 997  VKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQG 1176
             K +LQSQF REPTL+EWA+A G+SC  L+S LH G  SREK+  AN RLVVHVAKQYQG
Sbjct: 291  EKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350

Query: 1177 KGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENV 1356
            +G+ L DL+QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+
Sbjct: 351  RGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410

Query: 1357 YSLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSN 1533
            Y+LL +V  AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +
Sbjct: 411  YTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470

Query: 1534 TTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQI 1713
            TTFQEITADTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++
Sbjct: 471  TTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEV 530

Query: 1714 GSV 1722
            G++
Sbjct: 531  GNI 533


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X3 [Citrus sinensis]
          Length = 561

 Score =  491 bits (1263), Expect = e-136
 Identities = 270/535 (50%), Positives = 353/535 (65%), Gaps = 4/535 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 309
            ME+GR LL SP  FP + ++++S   S +     +  +     T+S   HFP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 310  HVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQLLYASDLRS 483
              E+RPLL M  +DK  +   D R  +  A           D  ++  E Q L+  DL +
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 484  LFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 663
            L P +   E    S  MQS++ DT+   + EP+D                    +   S+
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA--------SKEAASL 172

Query: 664  ADSEKFL-EEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSL 840
            A++ K    EF   S ++SL    PLE+   V+S              K K   H+  + 
Sbjct: 173  AENPKLNGAEFTDISLTSSLGY--PLEEVKTVRSTQFLERRSKKRKVSKPKVTNHETYNS 230

Query: 841  RKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQ 1020
            RKA+++ K++EGFD NDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ K +LQSQ
Sbjct: 231  RKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 290

Query: 1021 FNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDL 1200
            F REPTL+EWA+A G+SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+G+ L DL
Sbjct: 291  FGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDL 350

Query: 1201 MQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 1380
            +QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V 
Sbjct: 351  LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVL 410

Query: 1381 NAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITA 1557
             AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +TTFQEITA
Sbjct: 411  EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITA 470

Query: 1558 DTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            DTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G++
Sbjct: 471  DTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNI 525


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Citrus sinensis]
          Length = 570

 Score =  490 bits (1262), Expect = e-136
 Identities = 274/544 (50%), Positives = 357/544 (65%), Gaps = 13/544 (2%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLS---------VTMLHEQTISSAKPFSTTSTTWHF 282
            ME+GR LL SP  FP + ++++S   S         V M +EQ+  +     T+S   HF
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAVLMHNEQSAPAVASVPTSSVARHF 60

Query: 283  PASALLQEQHVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQ 456
            P S LLQEQ  E+RPLL M  +DK  +   D R  +  A           D  ++  E Q
Sbjct: 61   PTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQ 120

Query: 457  LLYASDLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXX 636
             L+  DL +L P +   E    S  MQS++ DT+   + EP+D                 
Sbjct: 121  FLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA------ 174

Query: 637  XXEESNVSIADSEKFL-EEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAK 813
               +   S+A++ K    EF   S ++SL    PLE+   V+S              K K
Sbjct: 175  --SKEAASLAENPKLNGAEFTDISLTSSLGY--PLEEVKTVRSTQFLERRSKKRKVSKPK 230

Query: 814  AIVHDAPSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLE 993
               H+  + RKA+++ K++EGFD NDPLRLFL G ETR+LLTA EE EL  QI+ L +LE
Sbjct: 231  VTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE 290

Query: 994  EVKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQ 1173
            + K +LQSQF REPTL+EWA+A G+SC  L+S LH G  SREK+  AN RLVVHVAKQYQ
Sbjct: 291  KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ 350

Query: 1174 GKGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPEN 1353
            G+G+ L DL+QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN
Sbjct: 351  GRGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPEN 410

Query: 1354 VYSLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADS 1530
            +Y+LL +V  AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD 
Sbjct: 411  IYTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQ 470

Query: 1531 NTTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQ 1710
            +TTFQEITADTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS+
Sbjct: 471  DTTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSE 530

Query: 1711 IGSV 1722
            +G++
Sbjct: 531  VGNI 534


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530788|gb|ESR41971.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  478 bits (1229), Expect = e-132
 Identities = 270/543 (49%), Positives = 353/543 (65%), Gaps = 12/543 (2%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNS--------TPLSVTMLHEQTISSAKPFSTTSTTWHFP 285
            ME+GR LL SP  FP + ++++S        +  SV M +EQ+  +     T+S   HFP
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP 60

Query: 286  ASALLQEQHVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQL 459
             S LLQEQ  E+RPLL M  +DK  +   D R  +  A           D  ++  E Q 
Sbjct: 61   TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQF 120

Query: 460  LYASDLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXX 639
            L+  DL +L P +   E    S  MQS++ DT+   + EP+D                  
Sbjct: 121  LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA------- 173

Query: 640  XEESNVSIADSEKFL-EEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKA 816
              +   S+A++ K    EF   S ++SL    PLE+   V+S              K K 
Sbjct: 174  -SKEAASLAENPKLNGAEFTDISLTSSLGY--PLEEVKTVRSTRFLERRSKKRKVSKPKV 230

Query: 817  IVHDAPSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEE 996
              H+  + RKA+++ K++EGFDPNDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+
Sbjct: 231  TNHETYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290

Query: 997  VKVRLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQG 1176
             K +LQSQF REPTL+       +SC  L+S LH G  SREK+  AN RLVVHVAKQYQG
Sbjct: 291  EKSKLQSQFGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350

Query: 1177 KGLNLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENV 1356
            +G+ L DL+QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+
Sbjct: 351  RGIGLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENI 410

Query: 1357 YSLLRQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSN 1533
            Y+LL +V  AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +
Sbjct: 411  YTLLSRVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470

Query: 1534 TTFQEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQI 1713
            TTFQEITADTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++
Sbjct: 471  TTFQEITADTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEV 530

Query: 1714 GSV 1722
            G++
Sbjct: 531  GNI 533


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530789|gb|ESR41972.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  477 bits (1227), Expect = e-132
 Identities = 266/535 (49%), Positives = 348/535 (65%), Gaps = 4/535 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 309
            ME+GR LL SP  FP + ++++S   S +     +  +     T+S   HFP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSAPAVASVPTSSVARHFPTSVLLQEQ 60

Query: 310  HVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQLLYASDLRS 483
              E+RPLL M  +DK  +   D R  +  A           D  ++  E Q L+  DL +
Sbjct: 61   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 120

Query: 484  LFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 663
            L P +   E    S  MQS++ DT+   + EP+D                    +   S+
Sbjct: 121  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA--------SKEAASL 172

Query: 664  ADSEKFL-EEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSL 840
            A++ K    EF   S ++SL    PLE+   V+S              K K   H+  + 
Sbjct: 173  AENPKLNGAEFTDISLTSSLGY--PLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNS 230

Query: 841  RKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQ 1020
            RKA+++ K++EGFDPNDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ K +LQSQ
Sbjct: 231  RKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 290

Query: 1021 FNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDL 1200
            F REPTL+       +SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+G+ L DL
Sbjct: 291  FGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDL 350

Query: 1201 MQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 1380
            +QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V 
Sbjct: 351  LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVL 410

Query: 1381 NAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITA 1557
             AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +TTFQEITA
Sbjct: 411  EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITA 470

Query: 1558 DTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            DTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G++
Sbjct: 471  DTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNI 525


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
            gi|557530787|gb|ESR41970.1| hypothetical protein
            CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  476 bits (1225), Expect = e-131
 Identities = 267/535 (49%), Positives = 350/535 (65%), Gaps = 4/535 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 309
            ME+GR LL SP  FP + ++++S   S +     +++S     T+S   HFP S LLQEQ
Sbjct: 1    MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVASVP---TSSVARHFPTSVLLQEQ 57

Query: 310  HVEFRPLLLM-SDDKALETMLDRRKTKDGAXXXXXXXXXX-DSYMKHFEQQLLYASDLRS 483
              E+RPLL M  +DK  +   D R  +  A           D  ++  E Q L+  DL +
Sbjct: 58   RDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDLEHQFLHWPDLWN 117

Query: 484  LFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 663
            L P +   E    S  MQS++ DT+   + EP+D                    +   S+
Sbjct: 118  LSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSA--------SKEAASL 169

Query: 664  ADSEKFL-EEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSL 840
            A++ K    EF   S ++SL    PLE+   V+S              K K   H+  + 
Sbjct: 170  AENPKLNGAEFTDISLTSSLGY--PLEEVKTVRSTRFLERRSKKRKVSKPKVTNHETYNS 227

Query: 841  RKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQ 1020
            RKA+++ K++EGFDPNDPLRLFL G ETR+LLTA EE EL  QI+ L +LE+ K +LQSQ
Sbjct: 228  RKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQ 287

Query: 1021 FNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDL 1200
            F REPTL+       +SC  L+S LH G  SREK+  AN RLVVHVAKQYQG+G+ L DL
Sbjct: 288  FGREPTLILKLLRFHLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGIGLHDL 347

Query: 1201 MQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 1380
            +QEGSMGLMKS+EKFKPQAGCRF++Y+YWW+RQ+IRKAIFQ+SRTIRLPEN+Y+LL +V 
Sbjct: 348  LQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVL 407

Query: 1381 NAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITA 1557
             AK L IQEG+H P  E+LA+RVGIT EKLE L++ TR+PLSMQQPVWAD +TTFQEITA
Sbjct: 408  EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITA 467

Query: 1558 DTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            DTG+EIP++ V K+ MR+H+ NLL +L PKER I+RLR+GIEDG+PKSLS++G++
Sbjct: 468  DTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNI 522


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
            gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
            FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  475 bits (1223), Expect = e-131
 Identities = 273/535 (51%), Positives = 345/535 (64%), Gaps = 4/535 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQ 309
            ME+GR LL S   FP +  L+NS   SV +L EQ   +     TTST  HFP S LLQEQ
Sbjct: 1    MEAGRTLLSSSPSFPTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQ 60

Query: 310  HVEFRPLL-LMSDDKALETMLDRRKTKDG-AXXXXXXXXXXDSYMKHFEQQLLYASDLRS 483
              EFRPL  +  +D+A +  LDRRKT+ G +          D  +++FE QL +     +
Sbjct: 61   RDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWN 120

Query: 484  LFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 663
            L                      TD L +VEP +V                   +    +
Sbjct: 121  L----------------------TDKLIDVEPTNVINLAKRALSA--------SKHAAFL 150

Query: 664  ADSEKFLEEFLRGSGSTSLAIEVPLEKEIK-VKSNXXXXXXXXXXXXPKAKAIVHDAPSL 840
            AD+   L+  L  + S+S ++E     E+K V+S             PK K ++ +    
Sbjct: 151  ADNNTDLDN-LASTSSSSFSLE-----EVKIVRSRRHLARQSLNRRAPKTKDLIFETYDS 204

Query: 841  RKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQ 1020
            + A++Q ++++GFDPNDPLRLFL G ET+QLLTAKEE EL  QI+ L  LE VK RL+SQ
Sbjct: 205  KSADVQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKNRLESQ 264

Query: 1021 FNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDL 1200
            F REPTLVEWA+A G+SC +L+  LH G RSREK+  AN R+VVH+AK+YQ +GL LQDL
Sbjct: 265  FGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGLGLQDL 324

Query: 1201 MQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 1380
            +QEG++GLMKSIEKFKPQAGCRF+TY+YWWIRQ+I KAIFQ+SRTIRLPENVY LL +V 
Sbjct: 325  LQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVM 384

Query: 1381 NAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITA 1557
             AK   IQEG+H PT EE+A+RVGI  +KLE LL  TR PLSMQQ VW+D NTTFQEITA
Sbjct: 385  EAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITA 444

Query: 1558 DTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            DT IEIP++ V K+ MR+HI  LL +L  KERRIIRLR+GIEDG+ KSLS+IG+V
Sbjct: 445  DTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNV 499


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
            gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
            rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  471 bits (1213), Expect = e-130
 Identities = 257/539 (47%), Positives = 353/539 (65%), Gaps = 8/539 (1%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNS----TPLSVTMLHEQTISSAKPFSTTSTTWHFPASAL 297
            ME+ R LL  P  F  + QL++S    +  SV M HEQ   +A     TS   HFP S L
Sbjct: 1    MEAARNLLSPPPTFSTRTQLKSSVFSTSSSSVLMFHEQAAPAATSIPITSVARHFPTSVL 60

Query: 298  LQEQHVEFRPLLLM---SDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYA 468
            LQEQ  ++RPL ++    +DKA     D+++ ++GA             +  FE++LL  
Sbjct: 61   LQEQRDDYRPLPVLHFFKEDKAYPGATDKQQIENGASLNEENASNNFGQLG-FEKKLLQW 119

Query: 469  SDLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEE 648
             DL  L   L + E   S++ MQS+A DT  + +VEP ++                  E+
Sbjct: 120  PDLTQLLSLLESEENPSSTSNMQSVAADTKEIVDVEPSNIVALAKKALSASKQAASLSED 179

Query: 649  SNVSIADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHD 828
              + + DS   L   L  + S +L +E   ++E+    +             + K  + +
Sbjct: 180  LKLDLDDS---LSNSLGSANSCTLPVE---KEEVVTVRSTRRLERQSKRRRVQPKVTIRE 233

Query: 829  APSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVR 1008
              S R+ +++ K++EGFDPNDPLRLFL G ET+QLLTAKEE EL  Q++ L +LE+VK +
Sbjct: 234  TYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQLLTAKEESELSNQVQNLMRLEKVKSK 293

Query: 1009 LQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLN 1188
            LQSQF REPTLVEWAEA G+ C  LQ+ LH G  SR+K+  AN R+VVH+AKQYQ +GL+
Sbjct: 294  LQSQFGREPTLVEWAEAIGLRCSALQAELHSGNSSRDKLIYANLRMVVHIAKQYQSRGLS 353

Query: 1189 LQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLL 1368
            LQDL+QEGSMGLMKS+E+FKPQ GCRF+TY+YWWIRQ+IRK+I Q+SRT+RLPENV++LL
Sbjct: 354  LQDLLQEGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLL 413

Query: 1369 RQVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQ 1545
             +V +AK   I+EG+H P+ EELA+RVGIT EKL+ LL++TR+PLSMQQ VW D + TFQ
Sbjct: 414  SKVLDAKKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQ 473

Query: 1546 EITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            E+T DTGIEIP++ V K+ MR+H+ NLL VL P+ER II+LR+GIE+ +  SLS+IG++
Sbjct: 474  EVTPDTGIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNM 532


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  469 bits (1207), Expect = e-129
 Identities = 272/540 (50%), Positives = 333/540 (61%), Gaps = 9/540 (1%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLS-------VTMLHEQTISSAKPFSTTSTTWHFPA 288
            ME+ R  L SP  FP +   +NS   S       V MLHEQ + +     TTS   +FP 
Sbjct: 1    METARTFLSSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPT 60

Query: 289  SALLQEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLY 465
            S LLQEQ  EFRPLL +  +DK  +  +D ++   G                    Q   
Sbjct: 61   SVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGT-----------------SDQEGI 103

Query: 466  ASDLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXE 645
             SD+      L     L  S  MQSI  +TD L  VEP +V                  +
Sbjct: 104  CSDV---LDQLILHSNLSWSLTMQSITTNTDELMVVEPTNVIDLARKALSAS-------K 153

Query: 646  ESNVSIADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVH 825
            E+ +         +    G   T L+    LE+   V+S              K K I H
Sbjct: 154  EAALLAQKCANLDDTVSTGLEPTDLS-NFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFH 212

Query: 826  DAPSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKV 1005
            +  S R+A +Q KINEGFDP DPLRLFL G ET+QLLTAKEE EL  Q++ L  LE VK 
Sbjct: 213  EPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKE 272

Query: 1006 RLQSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGL 1185
            + + QF R+PTLVEWA+A G+S  ++QS LH G RSREK+  AN R+VVH+AKQYQG+GL
Sbjct: 273  KFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGL 332

Query: 1186 NLQDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSL 1365
            +LQDL+QEGSMGLMKSIEKFKPQ GCRF+TY+YWWIRQ++RKAIFQ+SRTIRLPENVY  
Sbjct: 333  SLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHT 392

Query: 1366 LRQVKNAKNLCIQEG-HHPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTF 1542
            L +V  AK   I EG H+PT EELAKR+GITT +LE LLY  R+PLSMQQ VWAD  TTF
Sbjct: 393  LGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTF 452

Query: 1543 QEITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            QEITAD  +EIPEL V K+ MR+H+ +LL +L P+ER+IIRLRYGIEDG+ KSLS+IGSV
Sbjct: 453  QEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSV 512


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  455 bits (1170), Expect = e-125
 Identities = 258/538 (47%), Positives = 335/538 (62%), Gaps = 7/538 (1%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTP-----LSVTMLHEQTISSAKPFSTTSTTWHFPASA 294
            ME+GR+ L S S FP   QLR+  P      SV MLHEQ   +     T+  T HFP S 
Sbjct: 1    MEAGRHFLSSSSAFPSTTQLRHPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSV 60

Query: 295  LLQEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYAS 471
            LLQEQ  EF+PLL +  ++KA +  LDR + ++               +K F Q  +  S
Sbjct: 61   LLQEQRDEFKPLLHIFKEEKASQATLDRIQIENTTAEEDFNIDDFYKLVKDFRQLHVTPS 120

Query: 472  DLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEES 651
             +    P+    E   ++ +            +VEP DV                     
Sbjct: 121  QIGENSPTGSALESNTTANVHM----------DVEPSDVLTLAKHALSASLEA------- 163

Query: 652  NVSIADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDA 831
              S+A++ K +   L  S S  L  E    +  ++                K     ++ 
Sbjct: 164  -ASLAETSKSISAGLNESTSLGLGWEEETVRSTQLLERRRKRLKKRNLLNSKVPN--YEN 220

Query: 832  PSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRL 1011
             S   ++++ K  EG +PNDPLRLFL G ETRQLLT KEE EL  +++ + KLE VK RL
Sbjct: 221  SSSNSSDLRRKYREGLNPNDPLRLFLWGPETRQLLTLKEETELIARVQDVFKLEAVKSRL 280

Query: 1012 QSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNL 1191
            QSQF REPTL+EWAEA G+SC +LQS L  G  SREK+  +N R+VVH+AKQYQG+GL L
Sbjct: 281  QSQFGREPTLIEWAEAVGISCQMLQSQLRCGTSSREKLIYSNLRMVVHIAKQYQGRGLGL 340

Query: 1192 QDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1371
            QDL+QEGSMGLMKS+EKFKPQAGCRF+TY+YWW+RQ+IRKAIFQ+SRTIRLPENVY+LL 
Sbjct: 341  QDLLQEGSMGLMKSVEKFKPQAGCRFATYAYWWVRQTIRKAIFQHSRTIRLPENVYTLLG 400

Query: 1372 QVKNAKNLCIQEGH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQE 1548
            +V  AK   IQEG+ +P+ EELA+RVG++ EKL  LLY TR+P+SMQQ VWAD +TTFQE
Sbjct: 401  KVLEAKKSYIQEGNQNPSREELARRVGMSVEKLGKLLYCTRMPVSMQQTVWADQDTTFQE 460

Query: 1549 ITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            +TADTGIEIP+L V K+ MR+H+ NLL  L  +ER+IIRLRYGIEDG+ +SL++IG +
Sbjct: 461  VTADTGIEIPDLSVAKQLMRQHVRNLLHTLEKRERQIIRLRYGIEDGKQRSLTEIGEI 518


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Glycine max]
          Length = 554

 Score =  448 bits (1152), Expect = e-123
 Identities = 253/526 (48%), Positives = 338/526 (64%), Gaps = 7/526 (1%)
 Frame = +1

Query: 166  LFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQHVEFRPLLLMSD 345
            +F       +S+  SVTMLHEQ   +   +S++S   HFP S LLQEQ  E++P L + +
Sbjct: 1    MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPFLHVHN 60

Query: 346  DKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSLFPSLCTREKLVSS 525
                ET L+ R+    +          D  +  F QQL   S L++L     TR  + +S
Sbjct: 61   K---ETTLNTRQMDMTSVHEKGNTSNADQLVHDFVQQLHLRSHLQNLLTCSPTRG-IAAS 116

Query: 526  TIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSIADSEKFLEEFLRGS 705
            +I+Q +  D++  A+  P +                    E  +   D +  L     G 
Sbjct: 117  SILQPVDIDSEWPADGVPRNAVSLAQQALSASKQAVSTTGEMKLIEIDDDDPLPS---GL 173

Query: 706  GSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLRKANIQ------SKI 867
             STSL  +  L+K   V+S              K+K +  ++   RK+++Q       K+
Sbjct: 174  ASTSLT-DSSLKKNKVVRSTRIIERLSKQRKSSKSKFLDEESYLERKSDVQRRLRLEKKL 232

Query: 868  NEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQFNREPTLVE 1047
             EG+DPNDPLRLFLSG E+RQLLT +EE +L  Q++ L++LEEVK+RLQ+Q  REPTL E
Sbjct: 233  KEGYDPNDPLRLFLSGPESRQLLTREEESQLITQLQDLSRLEEVKIRLQTQLRREPTLAE 292

Query: 1048 WAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLMQEGSMGLM 1227
            WA+A G SC  LQ+ LH   RS+EK+  AN R+VVH+AK YQG+GL+LQDL QEGS GLM
Sbjct: 293  WADAVGHSCYALQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLM 352

Query: 1228 KSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLCIQE 1407
            KSIEKFKP+AGCRF TY+YWWIR ++RKAIF +SRTIRLPEN+Y+LL +V  AK   IQE
Sbjct: 353  KSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEAKKSYIQE 412

Query: 1408 GH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITADTGIEIPEL 1584
            G+ HPT EELA++VGIT EK+++LL+++R P+SMQQ VWAD +TTFQEITAD+ IEIP++
Sbjct: 413  GNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADSAIEIPDV 472

Query: 1585 HVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
             V+K+ MR H+HNLL +L PKER IIRLR+GIEDGE K+LS IG V
Sbjct: 473  TVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKV 518


>ref|XP_006577029.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Glycine max]
          Length = 554

 Score =  441 bits (1135), Expect = e-121
 Identities = 253/526 (48%), Positives = 336/526 (63%), Gaps = 7/526 (1%)
 Frame = +1

Query: 166  LFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQHVEFRPLLLMSD 345
            +F       +S+  SVTMLHEQ   +   +S++S   HFP S LLQEQ  E++PLL + +
Sbjct: 1    MFSSSPPFPSSSSPSVTMLHEQAAPAVASWSSSSAAQHFPTSVLLQEQRDEYKPLLHVHN 60

Query: 346  DKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSLFPSLCTREKLVSS 525
                ET L+ R+    +          D  +  F QQL   S L++L     TR  + +S
Sbjct: 61   K---ETTLNTRQMDMTSVHEKGNMSNGDQLVHDFVQQLHLRSHLQNLLTCSPTRG-IAAS 116

Query: 526  TIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSIADSEKFLEEFLRGS 705
            +I+Q +  D++  A+  P +                    E  +   D +  L     G 
Sbjct: 117  SILQPVDIDSEWPADGLPGNAISLAQQALSASKQAVSTTGEMKLIEIDDDDPLPF---GL 173

Query: 706  GSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLRKANIQ------SKI 867
             STSLA    L+K   V+S              K+K I  ++   RK+++Q       K+
Sbjct: 174  ASTSLA-NSSLKKNKVVRSTRIIERRSKQRKSSKSKIIDEESYLERKSDVQRRLRLEKKL 232

Query: 868  NEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQFNREPTLVE 1047
             EG+D NDPLRLFLSG E+RQLLT +EE  L  Q++ L++ EEVK+RLQSQ  REPTL E
Sbjct: 233  KEGYDQNDPLRLFLSGPESRQLLTREEESLLITQLQDLSRFEEVKIRLQSQLRREPTLAE 292

Query: 1048 WAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLMQEGSMGLM 1227
            WA+A G+SC  LQ+ LH   RS+EK+  AN R+VVH+AK YQG+GL+LQDL QEGS GLM
Sbjct: 293  WADAVGLSCYTLQTQLHCANRSKEKLFHANLRMVVHIAKHYQGRGLSLQDLFQEGSTGLM 352

Query: 1228 KSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLCIQE 1407
            KSI+KFKP+AGCRF TY+YWWIR +IRKAIF +SRTIRLPEN+Y+LL ++  AK   IQE
Sbjct: 353  KSIQKFKPEAGCRFGTYAYWWIRHAIRKAIFLHSRTIRLPENLYTLLGKLIEAKKSYIQE 412

Query: 1408 GH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITADTGIEIPEL 1584
            G+ HPT EELA+RVGIT EKL++LL+++R P+SMQQ +W D +TTFQEITAD+ IEIP +
Sbjct: 413  GNLHPTKEELARRVGITVEKLDNLLFASRNPISMQQTLWVDQDTTFQEITADSAIEIPGV 472

Query: 1585 HVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
             V+K+ MRRH+HNLL +L PKE+ IIRLR+GIEDG+ K+LS IG V
Sbjct: 473  TVSKQLMRRHVHNLLNILSPKEKGIIRLRFGIEDGKEKTLSDIGKV 518


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  441 bits (1133), Expect = e-121
 Identities = 249/537 (46%), Positives = 332/537 (61%), Gaps = 7/537 (1%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRN--STPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQ 303
            ME+ R L+ SP  FP +  +RN  S+  SV +LHEQ   +    ST S   H   S L+Q
Sbjct: 1    METVRSLVSSPPQFPLRTHVRNCSSSCSSVLLLHEQVTPALTSLSTPSLARHTTTSVLIQ 60

Query: 304  EQHVEFRPLLLMSDDKALETMLDRRKT----KDGAXXXXXXXXXXDSYMKHFEQQLLYAS 471
            +Q  E RPLL + DD   +   DRR+        +          D Y    + QLL   
Sbjct: 61   DQRNESRPLLSLKDDNTFQQTFDRRQMVTTPASSSSNEGNDKIDPDQYDNDLQLQLLRRP 120

Query: 472  DLRSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEES 651
            +L  L+ SL  +E    +T   S+    +++   E   V                   + 
Sbjct: 121  ELWYLWSSLQKKEHPFPTTTPNSLPSTAENVTGAEANHVLALAREAFSAC--------KE 172

Query: 652  NVSIADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDA 831
              SIA+  +  +     S ST   +  P+++ ++ K              PK +    + 
Sbjct: 173  AASIAEDARLYDN----SSSTRSLVGSPVQRIVRSKRRLERQAKRRA---PKPQLEDQEM 225

Query: 832  PSLRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRL 1011
               RK     K +EG+DPNDPLRLFL G ET QLL+AKEE +L  +I+ L KL+EV+ RL
Sbjct: 226  NHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQLLSAKEEADLIAKIQELMKLQEVRSRL 285

Query: 1012 QSQFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNL 1191
            Q+QF+REPTLVEWA A G+S   LQ  ++ G  SREK+  ANFRLVV++AKQYQG+GLNL
Sbjct: 286  QTQFSREPTLVEWAAAVGISTQALQFQVNCGNFSREKLIYANFRLVVYIAKQYQGRGLNL 345

Query: 1192 QDLMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLR 1371
            QDL+Q GSMGLMKS+EKFKP  GCRF+TY+YWWIRQSIRK++FQ+SRTIRLPENVY+LL 
Sbjct: 346  QDLLQLGSMGLMKSVEKFKPLVGCRFATYAYWWIRQSIRKSLFQHSRTIRLPENVYTLLS 405

Query: 1372 QVKNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQE 1548
            +V  AK  CI++G+H PT E++A   G++ EKL+ LLY++R+PLSMQ+PVW D +TTFQE
Sbjct: 406  KVYEAKKTCIKQGNHQPTKEDIAAAAGLSVEKLDRLLYTSRVPLSMQKPVWMDQDTTFQE 465

Query: 1549 ITADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGS 1719
            ITADT +E P++  +K+ MR+H  NLL VL P+ER+IIRLR+GIEDGE KSLS IG+
Sbjct: 466  ITADTAVEAPDVGASKQIMRQHTRNLLSVLNPRERKIIRLRFGIEDGEQKSLSDIGA 522


>ref|XP_006410876.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
            gi|312282671|dbj|BAJ34201.1| unnamed protein product
            [Thellungiella halophila] gi|557112045|gb|ESQ52329.1|
            hypothetical protein EUTSA_v10016472mg [Eutrema
            salsugineum]
          Length = 547

 Score =  438 bits (1126), Expect = e-120
 Identities = 250/536 (46%), Positives = 342/536 (63%), Gaps = 5/536 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRN--STPLSVTMLHEQTISSA-KPFSTTSTTWHFPASALL 300
            ME+ R L+ S   F  K  L++  S+P SV MLHEQT +        TS + HFPAS L 
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKSGFSSPSSVVMLHEQTATPVVNSRHLTSLSRHFPASVLS 60

Query: 301  QEQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDL 477
            QE   E +PL   + +D+  +  L+RR+  +                + FEQQLL+++ L
Sbjct: 61   QELREESKPLSHALREDRTSQLTLERRQFDELVSSRED---------EKFEQQLLHSAGL 111

Query: 478  RSLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNV 657
             +L  S  T EK + + +  S   D   L  +    +                  +++ +
Sbjct: 112  WNLLISPLTTEKQLPAVVSPSADADLCDLVALAQKALSAS---------------KQAAL 156

Query: 658  SIADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPS 837
             + +SE    +  R S STS ++ +P EK   V+S             PK+  +  +   
Sbjct: 157  LVENSEADPPDNPRDSLSTSSSMSLP-EKGTIVRSKRQLERRAKNRRAPKSNNMDSEGYV 215

Query: 838  LRKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQS 1017
             +K N + K+ +GFD +D L+LFL G ET+QLLTAKEE EL   I+ L KLE+VK +L+S
Sbjct: 216  PQKINAKKKMKQGFDTDDALQLFLWGPETKQLLTAKEEAELIAHIQHLIKLEKVKTKLES 275

Query: 1018 QFNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQD 1197
            Q   EPT+ EWAEA G+S  +L+S +H G+ SREK+  AN RLVVH+AKQYQ +GLN QD
Sbjct: 276  QNGCEPTIGEWAEAMGLSSPVLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQD 335

Query: 1198 LMQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQV 1377
            L+QEGSMGLMKS+EKFKPQ+GCRF+TY+YWWIRQSIRK+IFQNSRTIRLPENVY LL +V
Sbjct: 336  LLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKV 395

Query: 1378 KNAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEIT 1554
              A+  CIQ+G++ P+ E+LA  VG++TEKL+ LLY+TR PLSMQQP+W+D +TTFQE+T
Sbjct: 396  SEARKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVT 455

Query: 1555 ADTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
             D+GIE P + V K+ MR H+ NLL VL PKE+RII+LR+GI+ G+ +SLS+IG +
Sbjct: 456  PDSGIETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEI 511


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  437 bits (1125), Expect = e-120
 Identities = 248/532 (46%), Positives = 325/532 (61%), Gaps = 3/532 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRNSTPLSVTMLHEQTISSA-KPFSTTSTTWHFPASALLQE 306
            ME GR LL  P  FP +  LRN  P S +      +++       TS    F  S LLQE
Sbjct: 1    MEVGRNLLSPPPSFPSRTHLRNYLPSSSSASTSANVATGITSMPATSIAQPFSTSVLLQE 60

Query: 307  QHVEFRPLLLMS-DDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRS 483
            Q  EF+PLL ++ +DK  + +L+RR+   GA          + ++  FE+  ++      
Sbjct: 61   QRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLEDYNQFVWEFERPSVHWPGFWH 120

Query: 484  LFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSI 663
            + PSL T+ KL SS  M++         +VE  D                   EES +  
Sbjct: 121  VLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEESKLVG 180

Query: 664  ADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLR 843
             DS+  L     G G  ++     LE+  K +              P++  + ++ P  R
Sbjct: 181  TDSDDMLSVSFLGKGDKTVRSTRLLERRSKRRK------------VPESSVLFYENPRNR 228

Query: 844  KANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQF 1023
             A+I+ +++EG + +DPLRLFL+G ETRQLLT +EE EL  Q++ L KLE+VK RLQS+F
Sbjct: 229  AADIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESELIAQVQDLIKLEQVKARLQSEF 288

Query: 1024 NREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLM 1203
             REPTLVEWAEA G+SC ILQS +  G  SREK+ CAN RLVVH+AKQYQG+G+ +QDLM
Sbjct: 289  GREPTLVEWAEAVGLSCRILQSQIQSGTSSREKLICANLRLVVHIAKQYQGRGVGIQDLM 348

Query: 1204 QEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKN 1383
            QEGSMGLMKS+EKFKPQ GCRF++Y+YWWIRQ+               ENVY+LL +V  
Sbjct: 349  QEGSMGLMKSVEKFKPQVGCRFASYAYWWIRQT---------------ENVYTLLGKVLE 393

Query: 1384 AKNLCIQEG-HHPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITAD 1560
            AK   IQEG H+P+ E+LA RVGIT EKL  LLY TR+PLSMQQPVWAD +TTFQE+TAD
Sbjct: 394  AKRSSIQEGNHNPSKEDLATRVGITVEKLNKLLYMTRIPLSMQQPVWADQSTTFQEVTAD 453

Query: 1561 TGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIG 1716
            T IEIP++ V K+ MR+H+  LL  L  +ER+IIRLR+GIEDG  KSLS+IG
Sbjct: 454  TRIEIPDVSVAKQMMRQHVRGLLRSLNVRERQIIRLRFGIEDGNQKSLSEIG 505


>ref|XP_007162766.1| hypothetical protein PHAVU_001G178600g [Phaseolus vulgaris]
            gi|561036230|gb|ESW34760.1| hypothetical protein
            PHAVU_001G178600g [Phaseolus vulgaris]
          Length = 550

 Score =  437 bits (1124), Expect = e-120
 Identities = 247/526 (46%), Positives = 335/526 (63%), Gaps = 7/526 (1%)
 Frame = +1

Query: 166  LFPQKIQLRNSTPLSVTMLHEQTISSAKPFSTTSTTWHFPASALLQEQHVEFRPLLLMSD 345
            +F       +S+  SV MLHEQ   +   +S++ST  HFP S LLQEQ  E+RPLL +++
Sbjct: 1    MFSSSPPFPSSSSPSVMMLHEQAAPAVASWSSSSTARHFPTSVLLQEQREEYRPLLHVNN 60

Query: 346  DKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLRSLFPSLCTREKLVSS 525
             +A    L+ R+    +          D  +  F  QL   S L++L     TR  + +S
Sbjct: 61   KEAT---LNTRQMDMTSVQEKSNTGNPDPLVHDFVHQLHLRSHLQNLLTCYPTRG-IAAS 116

Query: 526  TIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVSIADSEKFLEEFLRGS 705
              +Q +  D++      P D                     S+V + D +  ++    G 
Sbjct: 117  LTLQPVDNDSE-----RPADGLPRNAVSLAQQALSASKQAASSVEVDDDD--VDPLSFGL 169

Query: 706  GSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSLRKANIQ------SKI 867
             STSL ++  L++   V+S              K+K +  ++   RK+ +Q       K+
Sbjct: 170  ASTSLGVD-SLKRNKIVRSTRIIERRSKQRKTSKSKLLDEESFLERKSYVQRKLRLEKKL 228

Query: 868  NEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQFNREPTLVE 1047
            NEGFD NDPLR+FLS  E+RQLLT +EE +L  Q++ L++LEEVK+RLQSQ  REPTL E
Sbjct: 229  NEGFDQNDPLRMFLSDPESRQLLTREEESQLITQLQDLSRLEEVKIRLQSQIRREPTLAE 288

Query: 1048 WAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDLMQEGSMGLM 1227
            WA+  G+SC  LQ+ LH   RS+EK+  AN R+VVH+AK YQG+GLNLQDL+QEGS GL+
Sbjct: 289  WADVLGLSCCALQTQLHCANRSKEKLFHANMRMVVHIAKYYQGRGLNLQDLLQEGSTGLL 348

Query: 1228 KSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVKNAKNLCIQE 1407
            KSI+KFKP  GCRF TY+YWWIR SIR+AIF +SRTIR+PEN+Y LL +V  AK   IQE
Sbjct: 349  KSIDKFKPGGGCRFGTYAYWWIRHSIRRAIFLHSRTIRVPENLYRLLGKVLEAKKSFIQE 408

Query: 1408 GH-HPTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITADTGIEIPEL 1584
            G+ HP+ EELA+RVGIT +KLE+LL+++R P+SMQQ VWAD  TTFQEITAD+ IEIP++
Sbjct: 409  GNIHPSKEELARRVGITVDKLENLLFTSRNPISMQQSVWADQETTFQEITADSAIEIPDV 468

Query: 1585 HVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
             V+K+ MRRH+HNLL +L PKE+ I+RLR+GIEDG+ K+LS IG V
Sbjct: 469  CVSKQLMRRHVHNLLNMLSPKEKSILRLRFGIEDGKEKTLSDIGKV 514


>ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
            gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70
            factor [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  436 bits (1121), Expect = e-119
 Identities = 252/535 (47%), Positives = 337/535 (62%), Gaps = 4/535 (0%)
 Frame = +1

Query: 130  MESGRYLLHSPSLFPQKIQLRN-STPLSVTMLHEQTISSA-KPFSTTSTTWHFPASALLQ 303
            ME+ R L+ S   F  K  L++ S+P SV MLHEQT +         S + HFPAS L Q
Sbjct: 1    MEATRNLVSSSPSFQTKTHLKSYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFPASVLSQ 60

Query: 304  EQHVEFRPLL-LMSDDKALETMLDRRKTKDGAXXXXXXXXXXDSYMKHFEQQLLYASDLR 480
            E   E RPL   + +D+  +  L+RR+  +                + FEQQLL+++ L 
Sbjct: 61   EPREESRPLSHALREDRTSQLTLERRQFDELVSSRED---------EKFEQQLLHSAGLW 111

Query: 481  SLFPSLCTREKLVSSTIMQSIAPDTDSLANVEPYDVXXXXXXXXXXXXXXXXXXEESNVS 660
            +L  S  T E          + P    LA+ E  D+                  +++  +
Sbjct: 112  NLLISPLTAET--------KLPPVVPPLADAELCDIVALAQKALSASKQAALLADDTEAN 163

Query: 661  IADSEKFLEEFLRGSGSTSLAIEVPLEKEIKVKSNXXXXXXXXXXXXPKAKAIVHDAPSL 840
             +D+        RGS STS ++ +P EK   V+S             PK+  + ++    
Sbjct: 164  PSDNT-------RGSLSTSSSMSLP-EKGAIVRSKRQLERRAKNRRAPKSNDVDNEGYVP 215

Query: 841  RKANIQSKINEGFDPNDPLRLFLSGSETRQLLTAKEERELFVQIKALTKLEEVKVRLQSQ 1020
            +K N + K  +G D +D L+LFL G ET+QLLTAKEE EL   I+ L KLE+VK +L+SQ
Sbjct: 216  QKINAKKKFKQGVDTDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQ 275

Query: 1021 FNREPTLVEWAEAAGMSCLILQSHLHLGQRSREKMACANFRLVVHVAKQYQGKGLNLQDL 1200
               EPT+ EWAEA G+S   L+S +H G+ SREK+  AN RLVVH+AKQYQ +GLN QDL
Sbjct: 276  NGCEPTIGEWAEAMGISSPDLKSEIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDL 335

Query: 1201 MQEGSMGLMKSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYSLLRQVK 1380
            +QEGSMGLMKS+EKFKPQ+GCRF+TY+YWWIRQSIRK+IFQNSRTIRLPENVY LL +V 
Sbjct: 336  LQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVS 395

Query: 1381 NAKNLCIQEGHH-PTNEELAKRVGITTEKLESLLYSTRLPLSMQQPVWADSNTTFQEITA 1557
             A+  C+QEG++ P+ E+LA  VG++TEKL+ LLY+TR PLSMQQP+W+D +TTFQEIT 
Sbjct: 396  EARKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITP 455

Query: 1558 DTGIEIPELHVNKKFMRRHIHNLLCVLPPKERRIIRLRYGIEDGEPKSLSQIGSV 1722
            D+GIE P + V K+ MR H+ NLL VL PKERRII+LR+GI+ G+ +SLS+IG +
Sbjct: 456  DSGIETPTMSVGKQMMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEI 510